BO24950.complete Sequence
931 bp assembled on 2010-06-03
GenBank Submission: KX794447
> BO24950.complete
GAAGTTATCAGTCGACATGGCACAGAGCAAATTGAACGATCTTGCCGGCA
AGCTGGGCAAAGGTGGTCCGCCGGGATTGGGAATCGGACTGAAGGTCCTG
GCCGCCGTGGGAGCAGCCGCCTATGGAGTCAGTCAGTCCCTGTACACCGT
TGAGGGTGGTCACCGCGCCATCATCTTCAGCCGTCTGGGCGGCATCCAGA
GCGACATTTACTCCGAGGGACTGCACGTGCGCATCCCCTGGTTCCAGTAT
CCCATTATCTATGACATTCGCTCGCGTCCCCGCAAAATATCCTCGCCCAC
TGGCTCCAAGGATCTGCAGATGATCAACATCTCGCTGCGTGTGCTGTCGC
GCCCCGATTCCCTGAACCTGCCCTATCTGCACAAGCAGCTGGGCGTGGAC
TACGACGAGAAGGTGCTGCCCTCCATTTGCAACGAGGTGCTGAAGAGCGT
GATTGCCAAGTTCAATGCCTCGCAGCTTATTACCCAGCGTCAGCAGGTAT
CCCTACTCATCCGCAAGGAGCTGGTCGAGCGCGCCCGCGACTTCAACATC
ATTCTGGACGATGTGTCCCTCACCGAGCTGAGCTTCGGCAAGGAATACAC
GGCGGCCATTGAGGCCAAACAAGTGGCTCAGCAGGAGGCACAGCGGGCTG
TCTTCTTTGTGGAGCGCGCCAAGCAGGAGAAGCAGCAGAAGATTGTTCAG
GCTGAGGGAGAAGCCGAGGCTGCTAAAATGTTAGGTCTGGCCGTGAAGCA
GAACCCAGCCTACCTGAAGCTGCGCAAGCTGCGTGCCGCTCAAAGCATTG
CACGCACGATTGCCAGCTCACAGAACAAGGTCTATTTGTCGGCGGATAGC
TTGATGCTTAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGT
TTACAAAAGTAAAGCAAGCTTTCTAGACCAT
BO24950.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:49:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Phb2-RF | 900 | CG15081-PF | 1..897 | 17..913 | 4485 | 100 | Plus |
| Phb2-RA | 900 | CG15081-PA | 1..897 | 17..913 | 4485 | 100 | Plus |
| Phb2-RB | 900 | CG15081-PB | 1..897 | 17..913 | 4485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:49:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Phb2-RF | 1614 | CG15081-RF | 167..1063 | 17..913 | 4485 | 100 | Plus |
| Phb2-RA | 1554 | CG15081-RA | 167..1063 | 17..913 | 4485 | 100 | Plus |
| Phb2-RB | 1518 | CG15081-RB | 71..967 | 17..913 | 4485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:49:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18820195..18820545 | 149..499 | 1755 | 100 | Plus |
| 2R | 25286936 | 2R | 18820603..18820838 | 495..730 | 1180 | 100 | Plus |
| 2R | 25286936 | 2R | 18819633..18819765 | 17..149 | 665 | 100 | Plus |
| 2R | 25286936 | 2R | 18821183..18821288 | 808..913 | 530 | 100 | Plus |
| 2R | 25286936 | 2R | 18821041..18821118 | 731..808 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:49:19 has no hits.
BO24950.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-03 13:59:45 Download gff for
BO24950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)03709-RA | 138..1034 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:13 Download gff for
BO24950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)03709-RB | 71..967 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:58:10 Download gff for
BO24950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phb2-RB | 71..967 | 17..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:58:10 Download gff for
BO24950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18819633..18819765 | 17..149 | 100 | -> | Plus |
| 2R | 18820196..18820542 | 150..496 | 100 | -> | Plus |
| 2R | 18820605..18820843 | 497..734 | 98 | -> | Plus |
| 2R | 18821045..18821118 | 735..808 | 100 | -> | Plus |
| 2R | 18821184..18821288 | 809..915 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:13 Download gff for
BO24950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14707138..14707270 | 17..149 | 100 | -> | Plus |
| arm_2R | 14707701..14708047 | 150..496 | 100 | -> | Plus |
| arm_2R | 14708110..14708348 | 497..734 | 98 | -> | Plus |
| arm_2R | 14708550..14708623 | 735..808 | 100 | -> | Plus |
| arm_2R | 14708689..14708793 | 809..915 | 98 | | Plus |
BO24950.pep Sequence
Translation from 16 to 931
> BO24950.pep
MAQSKLNDLAGKLGKGGPPGLGIGLKVLAAVGAAAYGVSQSLYTVEGGHR
AIIFSRLGGIQSDIYSEGLHVRIPWFQYPIIYDIRSRPRKISSPTGSKDL
QMINISLRVLSRPDSLNLPYLHKQLGVDYDEKVLPSICNEVLKSVIAKFN
ASQLITQRQQVSLLIRKELVERARDFNIILDDVSLTELSFGKEYTAAIEA
KQVAQQEAQRAVFFVERAKQEKQQKIVQAEGEAEAAKMLGLAVKQNPAYL
KLRKLRAAQSIARTIASSQNKVYLSADSLMLNIQDSGFDDMTEKVYKSKA
SFLDH
BO24950.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:40:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Phb2-PF | 299 | CG15081-PF | 1..299 | 1..299 | 1476 | 100 | Plus |
| Phb2-PA | 299 | CG15081-PA | 1..299 | 1..299 | 1476 | 100 | Plus |
| Phb2-PB | 299 | CG15081-PB | 1..299 | 1..299 | 1476 | 100 | Plus |
| Phb2-PC | 299 | CG15081-PC | 1..299 | 1..299 | 1476 | 100 | Plus |
| Phb2-PD | 303 | CG15081-PD | 1..297 | 1..297 | 1467 | 100 | Plus |
