BO24952.complete Sequence
2083 bp assembled on 2010-06-25
GenBank Submission: KX794921
> BO24952.complete
GAAGTTATCAGTCGACATGGGCAATGAAGGCAGCAAACTAAAAGGAATAC
TTGTTGAGGAAAATGCGGTGGAGACTAATCAATTTTGGACAGTTTATAAC
GCTAAGACGCCAGAGACAACCAACGATGAACGTTGCAGCCAGATGCTCTC
CGTATTCGAAGGAAAAGTCTTTGTCAAGGCACATGTATGGTCAAATGGAG
TGGGCCCGATTGAAAGAGCAATAAAAAACCTGATGGTCTACCGCCACCCG
TACATCTTAAAATATATAGCTACCTGGGAGAAGTCGGGACGGAAGTATCT
TGCTACAGAGAGAGTCAGACCTCTAGATGAGGTGCTGGCCCAGCAGACTG
ACATTGAAGTCTGCCTAGGGCTGCGAACCATTTTATGCGCTCTAATATTT
TTGGTTGAGAAGGCCCTGGCTCGGCACTTAAATATTAACACGCAGTCTAT
TTACGTAACGGAGAGTGGAAGCTGGCGCCTCGCTGGCTTCGAGTACGTTT
GGAGGGCCACGGATGTCAACAAACAACTGCTCGACTTGGCACATTCTTTT
ATAGACTTGACTATTCACGGAGAGAACTTCGAACAATTTTTCTTCTCCAT
TTTGTGCGAGAAAGTGCTAAGCAGGAAAGGAACTGATAGTTGTATTACTG
ATAGCACTCCACACGTTCATGAGTTCCGTGAGTATTGCAGCACACACCTA
AAGCATCAAAATACAAAGCTAAGGCCAAGACTTTCTGCTATCTTGCTACA
TCCATACTTCAACCATGAATTCGTGCTTATACATTCCTTTCTCTTTGAGT
TGCCACTGAAGTCAGTGCACGAGCGCCACAAATTCTTTAGAAGTTTGATT
GATCGATTGCGATATTTCGACGAGGAAGTAGTGGCTTCGCAGCTGGCATG
TGACTTACTCTCTAGAATGGTTCTGCTGGATCCTGCTGCACAAGAATTTG
TGACTCCGCATATACTCCGTACAAAAGTTACTGATAAAGCACCGGCATCG
CTATTTTCTCCGCAAATCTACGTACAATACTTAATGCCACACATACTCAA
GATGTTCCGCTTGCGTGATGCACAGATTCGATTAATACTTCTTGACTATT
TTATGGACTATGTTCGTCTCTTAAGCGATGAGCAACTAGAGAGCGAAATT
CTTCCTCATTTACAGCTTGGTATGAACGATACTAACGACGTCTTGGTAGG
CAAAACACTAAGGTGCATGGCTGATTTAGTTTCCATATTAGGAGCTAACA
AAGTTTTGGGCGGTGATCGTGCACGATGTTTTTCTGATGGCCGTCCACAC
GCTGCTGTTTCCAGAGACAGCAACAATCCTTATCCCGAACCGCGGTCTAT
TAGTCCTTTAATGAATACTAGATCCTTCGACGTAGAAGACTTTATGGTTT
CTGGGAGCCCATTGCCACAAGAAAGCAATGCCTCACCTTTATCTATTCGC
CTTAGCCCGGACGGTGGGGAGGACGAGAAACTTCGGTTAAATTCAAATGA
AAAATCCATAAGTATAAAACATAATATAGACCCCGAGAAGGACTCGTATA
TATCTGGCACAGAGCATGAAAGAGTGGCCAACATTGATGAGGAGGGGACT
TGGCTTGATTGGGACAATACAGACCACCTTCAACAGGGCTACCAAGTGGA
TCACGCTGTAACCGACTCTGAAACAAACAGTAATTCATTTGCTAGAGAGA
TCCAAACTGGCAAATCTTTATCGCCCTCATATCGCACTGGAAAATGTAAT
TTATCAGTTGGAGTAAACGAGACAATATCCCAGACAGAACAGAAAGTTAT
CGATGATCTCAGTGAGCTGGACATAAAAGTGCAAACGGTGATTCAAAGGT
CTGAGTTCAACGAATTTGATTTCTTCAAAGATATGGAACCGATCATCGAA
ATCCGGACTAGTACCTGTGAGACACCGGAGCAAATAAGCAGCCGTTTTGC
TGCTGCTGCGTCAGCCGTGAACTGTAATGAGCTGTGTGCCGATCAGGGTT
GGGGTCATGATGAACAGGATGATAAGGACGATATTGTCTGGGGCGTGACG
AATGTATCAACGCTTGCAAGCTTTCTAGACCAT
BO24952.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:46:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1344-RB | 2052 | CG1344-PB | 1..2049 | 17..2065 | 10245 | 100 | Plus |
| CG1344-RA | 2052 | CG1344-PA | 1..2049 | 17..2065 | 10245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:46:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1344-RB | 3051 | CG1344-RB | 32..2080 | 17..2065 | 10245 | 100 | Plus |
| CG1344-RA | 2202 | CG1344-RA | 32..2080 | 17..2065 | 10245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:46:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5653969..5655807 | 227..2065 | 9195 | 100 | Plus |
| 2R | 25286936 | 2R | 5653707..5653916 | 17..226 | 1050 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:46:28 has no hits.
BO24952.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:28:27 Download gff for
BO24952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1344-RA | 69..2117 | 17..2067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:14 Download gff for
BO24952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1344-RA | 32..2080 | 17..2067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:24:46 Download gff for
BO24952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1344-RA | 32..2080 | 17..2067 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:24:46 Download gff for
BO24952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5653707..5653916 | 17..226 | 100 | -> | Plus |
| 2R | 5653969..5655807 | 227..2067 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:14 Download gff for
BO24952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1541212..1541421 | 17..226 | 100 | -> | Plus |
| arm_2R | 1541474..1543312 | 227..2067 | 99 | | Plus |
BO24952.pep Sequence
Translation from 16 to 2083
> BO24952.pep
MGNEGSKLKGILVEENAVETNQFWTVYNAKTPETTNDERCSQMLSVFEGK
VFVKAHVWSNGVGPIERAIKNLMVYRHPYILKYIATWEKSGRKYLATERV
RPLDEVLAQQTDIEVCLGLRTILCALIFLVEKALARHLNINTQSIYVTES
GSWRLAGFEYVWRATDVNKQLLDLAHSFIDLTIHGENFEQFFFSILCEKV
LSRKGTDSCITDSTPHVHEFREYCSTHLKHQNTKLRPRLSAILLHPYFNH
EFVLIHSFLFELPLKSVHERHKFFRSLIDRLRYFDEEVVASQLACDLLSR
MVLLDPAAQEFVTPHILRTKVTDKAPASLFSPQIYVQYLMPHILKMFRLR
DAQIRLILLDYFMDYVRLLSDEQLESEILPHLQLGMNDTNDVLVGKTLRC
MADLVSILGANKVLGGDRARCFSDGRPHAAVSRDSNNPYPEPRSISPLMN
TRSFDVEDFMVSGSPLPQESNASPLSIRLSPDGGEDEKLRLNSNEKSISI
KHNIDPEKDSYISGTEHERVANIDEEGTWLDWDNTDHLQQGYQVDHAVTD
SETNSNSFAREIQTGKSLSPSYRTGKCNLSVGVNETISQTEQKVIDDLSE
LDIKVQTVIQRSEFNEFDFFKDMEPIIEIRTSTCETPEQISSRFAAAASA
VNCNELCADQGWGHDEQDDKDDIVWGVTNVSTLASFLDH
BO24952.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:03:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1344-PB | 683 | CG1344-PB | 1..683 | 1..683 | 3569 | 100 | Plus |
| CG1344-PA | 683 | CG1344-PA | 1..683 | 1..683 | 3569 | 100 | Plus |
