BO24954.complete Sequence
1597 bp assembled on 2010-06-03
GenBank Submission: KX798188
> BO24954.complete
GAAGTTATCAGTCGACATGGGTGGCGGAGATCTAAATCTGAAGAAATCAT
GGCATCCGCACACGATGAAAAACCAGGAGCGCGTTTGGAAGGCGGAGGAG
CAAGCGAAGATGGAGGAGCGCAAGCTGCAGGATCTGCGCAAGGAGATCAA
CGAGGAGCGGGACAGAGAGGAACTAAGGCGATTGGGCGAAAGTTCCGGAG
TGCTGAGCAATAATGGCGGAGCCGCCGGCGAGGCCAAGCTGGAGTGGATG
TACAAAAACAGCACAGAGCTGATCAACCGCGAGGAGTACCTCCTGGGCCG
TAAGATCGACAAGTCCTTTGAGACGCTGCAAGCGGAGGAAAGCCGCCAGG
AGCAGAACACAGTGGGTCTCAAGCAAACGATCAACCATGTGGAGCACGAC
TGTGTGCCCTTCTCCATCCGGACCTACCGCAATGTGCAGTCCAACGAACA
GGTGGACATACAGCGCAAGACCCTCGAGGATCCCCTGATGCTCATCAAGC
AGCGCGAAATGGAATCCCGTCGAAAGCTGCTTGAGAACCCCGTCAAGCTG
AAGGAAATCCATCGCATTCTCAAGACTGAACAGGAACAAAAGGCCGCAGA
GGGAAAGAAGAAGAACAAGAAGAACAAAAAGTCTAAGAAATCCAAAAAGA
AGAAGAAGAACCGACGATCCAGCAATGAGGAAAGTAGTGACAGCGAGAGC
AATGATAGCGACGATGACTTGGACAGAAAATTAGCCCGCCAAGTGAGCAA
ACTCAAGGGAGACCAAGGTGACCTTAAACTGGACAAGCTGCTGGACGCCA
AGTACCGCACCATTTCAAATCAATTAGACATGGCCACCAAGAAGAAAAAG
AGCAAGAAATCCAAGAAGAAGAAAAGCAGCGATAGCAGTGACGAAAGTAG
TGACGAAGAGGAAGAGCCAAGGAGAAAGCACAAAAGGAGCCACAGCTCAG
AGGACAGAAATCAGCGAGAAAGACGCAGGAGTAGAAGCCCCCGGGATAGA
AAAAAGCGACAGAGTAGAAGTCCGGAACAAAGGCAAAGGCAAAGGAGTCC
AGAAGAGAGAAGGGAAAGGCGCAGGAGCAGGAGCAGAAGTCCCTTAGCGA
GAAGACAGAGAAGAACCAGGAGCCCAGAGGACAGAAAAGCCAGACGTCAA
AGCAAGGACACTTCAAAGCAGCGCGAGAAACGCAGGAGTAGGACACCTGA
AGAGCGTTCCAGATCAAAACGCAGCAGGAGCCGAAGTTCCAAAGGAGATG
ACAAGCGAAGGATTGCCGAAAGACCGCCTCCCAGCCGTCCCACCGGCAAG
CCAAAGTTAAGCGAAGCCGACCGAGAAGCTCGCCTGCGCGAAATGATGGA
CAACGCCACTTGGAGAGAAGCGGATCGCAGCCAGGTGGTTCGCAAGCACC
GAGAAGCATACGCGCGCGAGGAGGCCCAAAATCGTGAACGAGACTTCGAC
AAGGAGTTCATTAACAAGGAGGTGAAGAAGGCCATTGCCAACCATAACTC
AATTGGCGATCGCATCCGGGCCAATCTCAACAACATACAGCGCACCGCCT
CCTCAATGGACAGCAACTTTGCCCGCAAAGCAAGCTTTCTAGACCAT
BO24954.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:50:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cwc25-RA | 1566 | CG2843-PA | 1..1563 | 17..1579 | 7815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cwc25-RA | 1730 | CG2843-RA | 102..1664 | 17..1579 | 7815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2745557..2746878 | 258..1579 | 6610 | 100 | Plus |
| 2L | 23513712 | 2L | 2745272..2745494 | 35..257 | 1115 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:50:30 has no hits.
BO24954.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-03 18:26:07 Download gff for
BO24954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cwc25-RA | 98..1660 | 17..1581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:35:52 Download gff for
BO24954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cwc25-RA | 102..1664 | 17..1581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:11 Download gff for
BO24954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cwc25-RA | 102..1664 | 17..1581 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:11 Download gff for
BO24954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2745199..2745216 | 17..34 | 100 | -> | Plus |
| 2L | 2745272..2745494 | 35..257 | 100 | -> | Plus |
| 2L | 2745557..2746878 | 258..1581 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:35:52 Download gff for
BO24954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2745199..2745216 | 17..34 | 100 | -> | Plus |
| arm_2L | 2745272..2745494 | 35..257 | 100 | -> | Plus |
| arm_2L | 2745557..2746878 | 258..1581 | 99 | | Plus |
BO24954.pep Sequence
Translation from 16 to 1597
> BO24954.pep
MGGGDLNLKKSWHPHTMKNQERVWKAEEQAKMEERKLQDLRKEINEERDR
EELRRLGESSGVLSNNGGAAGEAKLEWMYKNSTELINREEYLLGRKIDKS
FETLQAEESRQEQNTVGLKQTINHVEHDCVPFSIRTYRNVQSNEQVDIQR
KTLEDPLMLIKQREMESRRKLLENPVKLKEIHRILKTEQEQKAAEGKKKN
KKNKKSKKSKKKKKNRRSSNEESSDSESNDSDDDLDRKLARQVSKLKGDQ
GDLKLDKLLDAKYRTISNQLDMATKKKKSKKSKKKKSSDSSDESSDEEEE
PRRKHKRSHSSEDRNQRERRRSRSPRDRKKRQSRSPEQRQRQRSPEERRE
RRRSRSRSPLARRQRRTRSPEDRKARRQSKDTSKQREKRRSRTPEERSRS
KRSRSRSSKGDDKRRIAERPPPSRPTGKPKLSEADREARLREMMDNATWR
EADRSQVVRKHREAYAREEAQNRERDFDKEFINKEVKKAIANHNSIGDRI
RANLNNIQRTASSMDSNFARKASFLDH
BO24954.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:42:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cwc25-PA | 521 | CG2843-PA | 1..521 | 1..521 | 2642 | 100 | Plus |
| CG2839-PA | 826 | CG2839-PA | 300..743 | 18..480 | 352 | 24 | Plus |
| CG2839-PA | 826 | CG2839-PA | 267..700 | 7..488 | 324 | 23.2 | Plus |
| CG2839-PA | 826 | CG2839-PA | 266..600 | 141..480 | 297 | 20 | Plus |
| CG2839-PA | 826 | CG2839-PA | 338..755 | 18..460 | 293 | 23.2 | Plus |
| CG7971-PG | 1062 | CG7971-PG | 14..541 | 3..512 | 263 | 24.1 | Plus |
| CG7971-PA | 1062 | CG7971-PA | 14..541 | 3..512 | 263 | 24.1 | Plus |
| CG7971-PC | 1107 | CG7971-PC | 14..541 | 3..512 | 263 | 24.1 | Plus |
| CG7971-PG | 1062 | CG7971-PG | 263..673 | 9..462 | 259 | 22.2 | Plus |
| CG7971-PA | 1062 | CG7971-PA | 263..673 | 9..462 | 259 | 22.2 | Plus |
| CG2839-PA | 826 | CG2839-PA | 373..759 | 18..413 | 258 | 21.2 | Plus |
| CG7971-PG | 1062 | CG7971-PG | 290..674 | 189..524 | 206 | 23.5 | Plus |
| CG7971-PA | 1062 | CG7971-PA | 290..674 | 189..524 | 206 | 23.5 | Plus |
| CG2839-PA | 826 | CG2839-PA | 436..794 | 18..388 | 195 | 20.2 | Plus |
| CG2839-PA | 826 | CG2839-PA | 263..464 | 297..501 | 161 | 23.6 | Plus |
| CG7971-PG | 1062 | CG7971-PG | 428..826 | 18..421 | 158 | 20.1 | Plus |
| CG7971-PG | 1062 | CG7971-PG | 458..890 | 18..474 | 158 | 20.3 | Plus |
| CG7971-PA | 1062 | CG7971-PA | 428..826 | 18..421 | 158 | 20.1 | Plus |
| CG7971-PA | 1062 | CG7971-PA | 458..890 | 18..474 | 158 | 20.3 | Plus |
