BO24956.complete Sequence
970 bp assembled on 2010-06-03
GenBank Submission: KX796726
> BO24956.complete
GAAGTTATCAGTCGACATGTCTTCTTCCTCCACCTCCATGTCCAAGCAAC
CGGTGGACGAGATCTTGGTGGAACCACCGGCAGCCCAGCCTCCGCGTCCA
GATGACACACTTAGTGTACACTCGGACCACTCCTTGCATCCCGGATCCCT
TGACGCCTCGCATGCCAAGAACAGAAAGATCTACATTATGCGGCATGGCG
AGCGAGTCGACTTTACTTTTGGAACATGGATTCCATATTGCTTCGATGAG
TTTGGAAATTACATGAGGAAGGATTTAAACATGCCGAAGACGCTGCCTCG
TCGGAAGAACAGTCCGGAGGGCTGGCAGAATGATTCTCCGCTGACAAATG
TGGGTGTCTATCAGGCCAATCTTATTGGTCAAGCTTTGCTGGAGGCTCAA
GTGCAGATCGACCATGTTTACTGTTCGCCCTCGTATCGCTGCATCCAGAC
TTGCACCAGTGCGCTTGAGGGGCTGAAGCTTACGGGCAAGCAAAAAATCA
AACTGGAGCCGGGCCTGTTTGAGTGGATGGCCTGGTATCCGAGCGGTGTA
CCCGACTGGCTGACTAAGAACGAGCTGACCGAGGCCAAGTTCGACGTTGA
TTTGGATTATGAGCCGGTGCAGCCAGCGTCTGAGCTAACTGCTCGCCTAA
AGGAGTCCACCGAGCAGTTTTATGAACGTAACCATGACGTTATCCTCCAG
CTATTGGAGCAGACAACTGGAAATATTTTGGTTGTTGCCCATGCCACCAC
ACTGGACACTTGTTCCCGTCAACTGACCGGTGGAGTTCCACGCAGCACGA
ACGAATTGCGCCAAGTCATCCACAAGATCCCCTACTGCAGCCTGGCAACG
GTGGAACAGGTGGACGGCGTCTGGAAGCTGGTTGAACCCGAATGTCTTCC
GGTGACGCACTCAAAGAATCCGCGGTTCGAGTGGAACGCCTTGTCGGCCA
CCGCAAGCTTTCTAGACCAT
BO24956.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:50:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13604-RE | 2292 | CG13604-PE | 1318..2253 | 17..952 | 4680 | 100 | Plus |
| CG13604-RD | 2154 | CG13604-PD | 1216..2151 | 17..952 | 4680 | 100 | Plus |
| CG13604-RC | 939 | CG13604-PC | 1..936 | 17..952 | 4680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:50:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13604-RE | 3042 | CG13604-RE | 1438..2373 | 17..952 | 4680 | 100 | Plus |
| CG13604-RD | 2940 | CG13604-RD | 1336..2271 | 17..952 | 4680 | 100 | Plus |
| CG13604-RC | 2326 | CG13604-RC | 722..1657 | 17..952 | 4680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:50:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23989771..23990470 | 716..17 | 3500 | 100 | Minus |
| 3R | 32079331 | 3R | 23989475..23989710 | 952..717 | 1180 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:50:07 has no hits.
BO24956.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-03 13:59:48 Download gff for
BO24956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13604-RC | 722..1657 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:16 Download gff for
BO24956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13604-RC | 722..1657 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:58:35 Download gff for
BO24956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13604-RC | 722..1657 | 17..954 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:58:35 Download gff for
BO24956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23989473..23989710 | 717..954 | 99 | <- | Minus |
| 3R | 23989771..23990470 | 17..716 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:16 Download gff for
BO24956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19815195..19815432 | 717..954 | 99 | <- | Minus |
| arm_3R | 19815493..19816192 | 17..716 | 100 | | Minus |
BO24956.pep Sequence
Translation from 16 to 970
> BO24956.pep
MSSSSTSMSKQPVDEILVEPPAAQPPRPDDTLSVHSDHSLHPGSLDASHA
KNRKIYIMRHGERVDFTFGTWIPYCFDEFGNYMRKDLNMPKTLPRRKNSP
EGWQNDSPLTNVGVYQANLIGQALLEAQVQIDHVYCSPSYRCIQTCTSAL
EGLKLTGKQKIKLEPGLFEWMAWYPSGVPDWLTKNELTEAKFDVDLDYEP
VQPASELTARLKESTEQFYERNHDVILQLLEQTTGNILVVAHATTLDTCS
RQLTGGVPRSTNELRQVIHKIPYCSLATVEQVDGVWKLVEPECLPVTHSK
NPRFEWNALSATASFLDH
BO24956.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:40:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13604-PC | 312 | CG13604-PC | 1..312 | 1..312 | 1674 | 100 | Plus |
| CG13604-PB | 312 | CG13604-PB | 1..312 | 1..312 | 1674 | 100 | Plus |
| CG13604-PD | 717 | CG13604-PD | 406..717 | 1..312 | 1674 | 100 | Plus |
| CG13604-PA | 751 | CG13604-PA | 440..751 | 1..312 | 1674 | 100 | Plus |
| CG13604-PE | 763 | CG13604-PE | 440..751 | 1..312 | 1674 | 100 | Plus |
