BO24957.complete Sequence
2392 bp assembled on 2010-06-25
GenBank Submission: KX794059
> BO24957.complete
GAAGTTATCAGTCGACATGCTAAAGTCGATCAGCGGAGGCGTTGGCGTGG
CATCCACGGAACGAGGTGGTGGCGGAGGAGGCTGCGGAGGAGGTGGAGCA
GGAGGAAGCGCCTCTGGGAGCAGGAGTACCAGCGGAAGCGGGCGCGCTAG
CTGTGGGCTGGGCTCCAGTTCGATTTCCAGTGGATTGAGTGCGGTGTGCG
GATTTGTGACCGGAGCTAGTGGCGGAGGTGGATTTGAGCGGGATCGCGAC
AGGGACAGAGGATTAGCCAACATCAGCGGTGGCAGCACTCCTGCCGGGAT
CCTTTATTGCCCCGCTTGTATGGCAGCTGCCAATCAGCAGAGTCCCAGCC
AGAATTCGAGTCCGCACCACGAGAGTTTCTTCTTGCGCAGCTCCTTCAAG
TCGAGCAAACGGAACAAGGCCAGGAAAAGCGCCTCCACCGCCGGCTGCTT
AGACGCCCAGCACATACGGGCGAATCTCCGAATGTCCATGTCCAGTTCAA
TGAGAAGCTCTAGAGGGAATGGCGGTGGTGGAGCGGCCTCCTCCTCGCAT
CCTCCGGGCAGCAGCTGCAGCAGCGGACCAGGAGGATCGGGATGTAGTAT
GGCATATGACGCGGCAAGCAATGCCAGCAGTGGAAGTGGCAGTGGAAGCG
GAAAGGCCACTTCCCCGGGTAGCTACAGCTGCAATGCCCTGAACGTGGAC
TTCACCTCCTACACGGCCACGCATCAGTGGACCAGGATGCTCGAATGCGC
CGAGTTCGTGGGCGCCAAGCGAAGCAAGCACACAGTGGTGGCCTACAAGG
ATGCGATGTTTGTATTCGGAGGTGACAACGGCAAGAACATGCTAAACGAC
CTGATTCGCTTCGGCGTTAAGGACAAGTCATGGGGCCGCGCATGTGCAAC
AGGAACTCCGCCTGCTCCGCGATACCACCACTCGGCGGTGGTGGCCGGCA
GCTCTATGTTCATCTTTGGGGGTTACACCGGCGACATTCACTCCAACTCA
AACTTGACCAACAAGAACGATCTGTTCGAATACAAGTTCCAGAGCGCCAT
GTGGGTGGAATGGAAGTTCTCCGGACGCCAGCCGGTTCCTCGATCCGCTC
ACGGAGCAGCCGTGTATGACAACAAAATGTGGATCTATGCGGGCTACGAT
GGCAATGCTCGGCTGAACGACATGTGGACGCTAAACCTCACCGGTGAAAA
TCAGTGGGAGGAGGTGGATCAGCTGGGCGATCGTCCGCCCACGTGCTGCA
ATTTCCCCGTGGCAGTGGCCAGGGACGCCATGTACGTCTTTTCGGGGCAG
AGTGGCTTGCAGATAACGAACTCGCTCTTTGAGTTCCACTTCAAGACGCG
AACTTGGCGACGCATTTCCAATGAGCCCGTCTTGCGAGGCGCTACCTCAG
CTCCGCCCTCGCGACGATATGGCCACACGATGGTGCATCACGATCGGTTC
CTGTATGTCTTCGGGGGATCGGCGGACTCAACGCTGCCCAACGATTTACA
CTGCTACGATCTAGACTCGCAGGTCTGGTCCGTCATCCAGCCTGAACAGA
ATTCGGATGTGCCTTCGGGTAGAGTGTTCCATGCCTCGGCAGTCATCTGC
GATGCCATGTACATATTTGGCGGAACCGTGGACAATAGTGTGAGAAGGGG
CGACACCTATCGCTTCCAGTTCTCGTCGTACCCGAAGTGCACGCTGCGCG
ATGACTTCGGAAAATTCTTCCAGGACAAACAGTTCTGCGACATTCAGTTT
ATTGTCGGAGCGGAGGAGATTCGCATACTAGCACACATCGCCTTTGTGGC
GGCGCGCTCGAAGTATCTGAGGAACAAGATTTTGGCAGCCCGGGAGGCAC
GCCAGCAGCAGATGGAGAAGGTCTACGGGGTGGGCCAGGTAGATGCACTG
GCTCTGAATGCGGGCGCGGGCGGGGACCGCGGACCCATGTTGGAGGTGCG
ACTGGCCAACGCCTCCCCCGAGGCCTTTGAAATCATATTGAATTACATTT
ACACCGATCGAATTGACTTGAAGGACACTTACAGCAAGAACATCATCATT
CTGATCACAGATATTTACCAACTTGCCGGTTTGTTTACCATGCCGCGGCT
GGCCCACGGCTGTATCCAGTATTTGGACTACAAGATTAACAAGCTTAACG
TGCTGGAGGCGCTCTACAATGCGGATAAGAGCAATATTAAGATCATTAAG
GATCACTGCATGCAGTTCATCATCAAGGAGGAGAACTTCACTGACGTGGT
CATGTCCAGTGAGTTTAGCGATTTGGACAAGCCTCTGCTGGTCGAGATCA
TCCGCAAGCGCCTGTATCCCAGCAAGCTGGTGATAGATACCAGCTATGAA
GGCAATATAGGTACGGTTCGTCGAGCAAGCTTTCTAGACCAT
BO24957.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:46:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3711-RD | 2997 | CG3711-PD | 1..2345 | 17..2361 | 11725 | 100 | Plus |
| CG3711-RE | 2928 | CG3711-PE | 1..2345 | 17..2361 | 11725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:46:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3711-RD | 4056 | CG3711-RD | 136..2480 | 17..2361 | 11725 | 100 | Plus |
| CG3711-RE | 4335 | CG3711-RE | 136..2480 | 17..2361 | 11725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:46:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 925218..926633 | 2184..769 | 7080 | 100 | Minus |
| X | 23542271 | X | 926695..927447 | 769..17 | 3765 | 100 | Minus |
| X | 23542271 | X | 924959..925148 | 2374..2185 | 950 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:46:17 has no hits.
BO24957.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:28:24 Download gff for
BO24957.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3711-RB | 117..2474 | 17..2376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:09 Download gff for
BO24957.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3711-RE | 136..2483 | 17..2364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:24:43 Download gff for
BO24957.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3711-RE | 136..2483 | 17..2364 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:24:43 Download gff for
BO24957.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 924957..925148 | 2185..2376 | 98 | <- | Minus |
| X | 925218..926633 | 769..2184 | 100 | <- | Minus |
| X | 926696..927447 | 17..768 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:09 Download gff for
BO24957.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 818990..819181 | 2185..2376 | 98 | <- | Minus |
| arm_X | 819251..820666 | 769..2184 | 100 | <- | Minus |
| arm_X | 820729..821480 | 17..768 | 100 | | Minus |
BO24957.pep Sequence
Translation from 16 to 2392
> BO24957.pep
MLKSISGGVGVASTERGGGGGGCGGGGAGGSASGSRSTSGSGRASCGLGS
SSISSGLSAVCGFVTGASGGGGFERDRDRDRGLANISGGSTPAGILYCPA
CMAAANQQSPSQNSSPHHESFFLRSSFKSSKRNKARKSASTAGCLDAQHI
RANLRMSMSSSMRSSRGNGGGGAASSSHPPGSSCSSGPGGSGCSMAYDAA
SNASSGSGSGSGKATSPGSYSCNALNVDFTSYTATHQWTRMLECAEFVGA
KRSKHTVVAYKDAMFVFGGDNGKNMLNDLIRFGVKDKSWGRACATGTPPA
PRYHHSAVVAGSSMFIFGGYTGDIHSNSNLTNKNDLFEYKFQSAMWVEWK
FSGRQPVPRSAHGAAVYDNKMWIYAGYDGNARLNDMWTLNLTGENQWEEV
DQLGDRPPTCCNFPVAVARDAMYVFSGQSGLQITNSLFEFHFKTRTWRRI
SNEPVLRGATSAPPSRRYGHTMVHHDRFLYVFGGSADSTLPNDLHCYDLD
SQVWSVIQPEQNSDVPSGRVFHASAVICDAMYIFGGTVDNSVRRGDTYRF
QFSSYPKCTLRDDFGKFFQDKQFCDIQFIVGAEEIRILAHIAFVAARSKY
LRNKILAAREARQQQMEKVYGVGQVDALALNAGAGGDRGPMLEVRLANAS
PEAFEIILNYIYTDRIDLKDTYSKNIIILITDIYQLAGLFTMPRLAHGCI
QYLDYKINKLNVLEALYNADKSNIKIIKDHCMQFIIKEENFTDVVMSSEF
SDLDKPLLVEIIRKRLYPSKLVIDTSYEGNIGTVRRASFLDH
BO24957.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:03:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3711-PD | 998 | CG3711-PD | 1..783 | 1..783 | 4134 | 100 | Plus |
| CG3711-PE | 975 | CG3711-PE | 1..783 | 1..783 | 4134 | 100 | Plus |
| CG12081-PB | 403 | CG12081-PB | 77..311 | 251..486 | 243 | 30.4 | Plus |
| CG12081-PA | 403 | CG12081-PA | 77..311 | 251..486 | 243 | 30.4 | Plus |
| CG12081-PB | 403 | CG12081-PB | 10..314 | 249..541 | 223 | 27.2 | Plus |
| CG12081-PA | 403 | CG12081-PA | 10..314 | 249..541 | 223 | 27.2 | Plus |
| CG6758-PA | 667 | CG6758-PA | 101..288 | 250..430 | 190 | 29.1 | Plus |
