BO24958.complete Sequence
349 bp assembled on 2010-06-03
GenBank Submission: KX798659
> BO24958.complete
GAAGTTATCAGTCGACATGAAATTCCTGATTGTCTTCGTCGCCCTCTTCG
CCGTGGCTCTGGCTGCTCCTGCCGCTGAGGAACCCACAATCGTGCGCTCT
GAATCCGACGTTGGACCCGAAAGCTTCAAATACGACTGGGAAACCTCCGA
TGGACAGGCTGCTCAAGCTGTAGGTCAGCTGAACGACATTGGAACTGAGA
ACGAGGCTATCTCTGTGAGTGGATCCTACCGCTTCATTGCTGATGATGGC
CAGACCTACCAAGTCAACTACATCGCCGATAAGAACGGATTCCAGCCCCA
GGGTGCTCATCTGCCCGTTGCCCCCGTGGCAGCAAGCTTTCTAGACCAT
BO24958.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:50:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lcp65Ag1-RA | 318 | CG10530-PA | 1..315 | 17..331 | 1575 | 100 | Plus |
| Lcp65Ag2-RA | 318 | CG10534-PA | 1..314 | 17..330 | 1570 | 100 | Plus |
| Lcp65Ag3-RA | 318 | CG18779-PA | 1..315 | 17..331 | 1560 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:50:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lcp65Ag1-RA | 517 | CG10530-RA | 61..376 | 16..331 | 1580 | 100 | Plus |
| Lcp65Ag2-RA | 543 | CG10534-RA | 61..375 | 16..330 | 1575 | 100 | Plus |
| Lcp65Ag3-RA | 543 | CG18779-RA | 60..375 | 16..331 | 1565 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:50:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6134838..6135033 | 331..136 | 980 | 100 | Minus |
| 3L | 28110227 | 3L | 6133158..6133352 | 330..136 | 975 | 100 | Minus |
| 3L | 28110227 | 3L | 6130554..6130749 | 331..136 | 965 | 99.5 | Minus |
| 3L | 28110227 | 3L | 6130811..6130930 | 135..16 | 600 | 100 | Minus |
| 3L | 28110227 | 3L | 6133414..6133533 | 135..16 | 600 | 100 | Minus |
| 3L | 28110227 | 3L | 6135095..6135214 | 135..16 | 600 | 100 | Minus |
| 3L | 28110227 | 3L | 6137725..6137826 | 322..221 | 405 | 93.1 | Minus |
| 3L | 28110227 | 3L | 6147570..6147653 | 327..244 | 315 | 91.7 | Minus |
| 3L | 28110227 | 3L | 6150441..6150524 | 327..244 | 315 | 91.7 | Minus |
| 3L | 28110227 | 3L | 6145194..6145289 | 221..316 | 285 | 86.5 | Plus |
| 3L | 28110227 | 3L | 6136385..6136555 | 329..159 | 270 | 77.2 | Minus |
| 3L | 28110227 | 3L | 6136699..6136742 | 58..15 | 190 | 95.5 | Minus |
| 3L | 28110227 | 3L | 6139425..6139496 | 316..245 | 180 | 83.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:50:26 has no hits.
BO24958.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-03 13:59:50 Download gff for
BO24958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp65Ag1-RA | 58..372 | 17..333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:18 Download gff for
BO24958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp65Ag1-RA | 62..376 | 17..333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:58:42 Download gff for
BO24958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp65Ag1-RA | 62..376 | 17..333 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:58:42 Download gff for
BO24958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6134836..6135033 | 136..333 | 98 | <- | Minus |
| 3L | 6135095..6135213 | 17..135 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:18 Download gff for
BO24958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6127936..6128133 | 136..333 | 98 | <- | Minus |
| arm_3L | 6128195..6128313 | 17..135 | 100 | | Minus |
BO24958.pep Sequence
Translation from 16 to 349
> BO24958.pep
MKFLIVFVALFAVALAAPAAEEPTIVRSESDVGPESFKYDWETSDGQAAQ
AVGQLNDIGTENEAISVSGSYRFIADDGQTYQVNYIADKNGFQPQGAHLP
VAPVAASFLDH
BO24958.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:40:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lcp65Ag1-PA | 105 | CG10530-PA | 1..105 | 1..105 | 535 | 100 | Plus |
| Lcp65Ag2-PA | 105 | CG10534-PA | 1..105 | 1..105 | 535 | 100 | Plus |
| Lcp65Ag3-PA | 105 | CG18779-PA | 1..105 | 1..105 | 532 | 99 | Plus |
| Lcp65Af-PA | 100 | CG10533-PA | 1..99 | 1..104 | 351 | 64.4 | Plus |
| Lcp65Ae-PA | 99 | CG10529-PA | 1..98 | 1..102 | 349 | 67.6 | Plus |
