BO24962.complete Sequence
2341 bp assembled on 2010-06-25
GenBank Submission: KX797324
> BO24962.complete
GAAGTTATCAGTCGACATGAAAATAAGAAATGACACGAAATGCTCGGTGT
TCCGCGGGCTCGTGCTCTGTCTGTGCCTGAACCTGAGCTATGCGAACGTG
GTCCGCTTCCCACGCGAGTTGGACCGCTACGGGTCGGCGTACCTGGTTCC
GTACGTGGTGTTGCTGTTTCTAGTCGGCCTGCCCATGGTTCTGCTGGAGA
TCTCGGTGGGCCAGTTTCTGGGCCAGGGGGCGGCGCACACCTGGCGCGCC
TCGCCCATTTTCAAAGGAGCCTGCATGATCAGTCGCTTTGCCTCCTGGCT
TTCGGCCATTTGGGTGTCCTTGCAGGCCGTGCTGGCACTGGCCTACATCG
GGATGTTCGCCTCCAATGACCTGCCATTCCGGGAGTGCGCTGGACCCGTG
AAGCTGCGATTGAGTGGATACCTCCTGACGGGAACCAGTGGACAAGAGTG
TTTGCAGCTGACCTTTCTAACTCCATTCTGGCGGAATCCTCTGTACTTTG
GTCTTCTGGCAGCGGGACTTATAGGCCTTTGGATAGTTGTAATGCTGTGC
ACACACAATGCCAAAATCCTGCGCCGCAGTATATTCGTCTTCGGACTAGT
TGGTCTAGTCCTGCTTTGCACACTCACTGGTTGGGAGGTGCGAAACTCCT
TCAGTCGTCACTACTTCCCGGAGCTGTGGGGATTCGACTCTAATTTGCTG
GCCGAAAGCAACATCTGGTTCAATGCCCTGATGCAGGTTCTCTTCTCAGT
GAATTGTGGCTTTGGAGCTCTGCCCATGATCACGGGCAAGTTCTTGTACA
AAGGCGATGCTGTGAGAACCTCGGTGGTTTATCTCTGCTTCAACCTGCTC
ATAAACGCCATTGCCGTAACCCTGTTCATGGTCCAGTTTGATTTGTCGTC
AAATGGCTTTCAGAATATGGAGGAACTAAAGCCCCTAACCGCCATCTACG
ATCGGGTATTGAATGGATCCCGGGAGGGCGACAGTCACCTACTACAACAT
CTGGTCCCATCGCTTATCTACGCCCTAATAATCCTCTCGGCCATGGTCTC
CATAACAGTGGCGGTGTACACCTCCACACGTCTTGTGCCACGACGCCCCA
ACTATGTGATCTGCTTGATTGGATTGGTGGTGGCCGTTATTTCATTTGCG
GCGCCCAAGTTTCTCATCGCCCGTGTGCTGGACTCGCGATTGGTGGGCAC
CATGGTGGTGACTGCTTTGGTGTTTGAGCTGATTGCCATAACTTGGATCT
ACGGAGCCAAGAACATCTACACCGACCTCGAGTTCTCCATAGGTCGTCCC
ATTTTCCGAGTGTGGATGTGGCTGTGGGTCATTTGTCCGGCCATACTAAC
AGGTATTCTGGTGTGGTGGTGTGCGGACGACGATCAGTACGACTTGCTGG
CGGAGTATCTCCCACGTTGGGCGCCAATTCTTTTTGTGCTGGCTGTCATC
GTGATCATCGCCTGTGTGCAGATCTTCCGGCAGGTAGAGTACAACTTCTT
TGGCATGATCTGCGAGGCTTCAAAGCCTGCAAAGGAGTGGGGTCCGGCGG
ATCCTTTGGCCCGACACTCATGGAAGCAGTGGCGCTCCGTATGCCAGGAC
ACAGGACGCAGGGACTTTACCCTGAGACGAAGAGGTACTCGGGACTATAC
GCACTCTATCAAGAAGGGTCAGTACTCGAGTGCGACGAAGTATGGAGTAC
AGAATGGAGGTCAAACCCAGACGCCTATGCATCAGCAGCACTGGAAGTCA
TCAACGCCGGGAAATAGTTCTCCCAACTACAGCGGATCCATGTTTGGGGA
CTCAGCCATTGAAGAGGATATTAGTGTGGATAAATTCCCAGGAATCACGC
AGCAGCAATACGTTCCCTTCCAGGCTAGTGATACGAAGCAGTCGAGGTAT
TCACAAAGAATCCGGCAAACCGCTCAGCCGCAGACCCAAACACAGATGCG
ACCGCCCAGGGAATCCGTGGAGAAACATCGCGAGGTGGTCTACATTCGCC
GCCTCTCCGATGGTGGAACTGGTACAGGTCATGCCACGCGTATAGAGATA
TCGCCCTCAAACGAATCCATTACCTACGGCAATGGCAAGAGCAACAATAA
CTACTCCTCGGCCATGTCCCGCAATCCGCTGGGCCGCTCCACGGGATGTC
TGGCCGCTCCGGCCCAGCCGCCGCCGCCCAGCGTGCATGTCAAGCGGTCG
GCCAGCTCGGTGGTCAATGTTAACTCACACAAGCTGCCACCTCCAGCGAC
GTCCGGTGGAGCGGCGGATCACATTTGCTGGCGGAAGTTCAACGTCAATC
CGGAAGAGTATTCCACGGAGCTGGCAAGCTTTCTAGACCAT
BO24962.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:46:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| blot-RA | 2310 | CG3897-PA | 1..2307 | 17..2323 | 11535 | 100 | Plus |
| blot-RE | 2430 | CG3897-PE | 139..2427 | 35..2323 | 11445 | 100 | Plus |
| blot-RC | 2430 | CG3897-PC | 139..2427 | 35..2323 | 11445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:46:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| blot-RA | 2927 | CG3897-RA | 95..2401 | 17..2323 | 11535 | 100 | Plus |
| blot-RE | 3089 | CG3897-RE | 275..2563 | 35..2323 | 11445 | 100 | Plus |
| blot-RC | 3057 | CG3897-RC | 243..2531 | 35..2323 | 11445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:46:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17396557..17398331 | 2323..549 | 8875 | 100 | Minus |
| 3L | 28110227 | 3L | 17401610..17401842 | 267..35 | 1165 | 100 | Minus |
| 3L | 28110227 | 3L | 17398587..17398734 | 412..265 | 740 | 100 | Minus |
| 3L | 28110227 | 3L | 17398395..17398532 | 549..412 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:46:08 has no hits.
BO24962.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:28:20 Download gff for
BO24962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blot-RA | 95..2401 | 17..2325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:04 Download gff for
BO24962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blot-RA | 95..2401 | 17..2325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:24:39 Download gff for
BO24962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blot-RA | 95..2401 | 17..2325 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:24:39 Download gff for
BO24962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17396554..17398330 | 550..2325 | 99 | <- | Minus |
| 3L | 17398395..17398531 | 413..549 | 100 | <- | Minus |
| 3L | 17398587..17398732 | 267..412 | 100 | <- | Minus |
| 3L | 17401611..17401842 | 35..266 | 100 | <- | Minus |
| 3L | 17406410..17406427 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:04 Download gff for
BO24962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17389654..17391430 | 550..2325 | 99 | <- | Minus |
| arm_3L | 17391495..17391631 | 413..549 | 100 | <- | Minus |
| arm_3L | 17391687..17391832 | 267..412 | 100 | <- | Minus |
| arm_3L | 17394711..17394942 | 35..266 | 100 | <- | Minus |
| arm_3L | 17399510..17399527 | 17..34 | 100 | | Minus |
BO24962.pep Sequence
Translation from 16 to 2341
> BO24962.pep
MKIRNDTKCSVFRGLVLCLCLNLSYANVVRFPRELDRYGSAYLVPYVVLL
FLVGLPMVLLEISVGQFLGQGAAHTWRASPIFKGACMISRFASWLSAIWV
SLQAVLALAYIGMFASNDLPFRECAGPVKLRLSGYLLTGTSGQECLQLTF
LTPFWRNPLYFGLLAAGLIGLWIVVMLCTHNAKILRRSIFVFGLVGLVLL
CTLTGWEVRNSFSRHYFPELWGFDSNLLAESNIWFNALMQVLFSVNCGFG
ALPMITGKFLYKGDAVRTSVVYLCFNLLINAIAVTLFMVQFDLSSNGFQN
MEELKPLTAIYDRVLNGSREGDSHLLQHLVPSLIYALIILSAMVSITVAV
YTSTRLVPRRPNYVICLIGLVVAVISFAAPKFLIARVLDSRLVGTMVVTA
LVFELIAITWIYGAKNIYTDLEFSIGRPIFRVWMWLWVICPAILTGILVW
WCADDDQYDLLAEYLPRWAPILFVLAVIVIIACVQIFRQVEYNFFGMICE
ASKPAKEWGPADPLARHSWKQWRSVCQDTGRRDFTLRRRGTRDYTHSIKK
GQYSSATKYGVQNGGQTQTPMHQQHWKSSTPGNSSPNYSGSMFGDSAIEE
DISVDKFPGITQQQYVPFQASDTKQSRYSQRIRQTAQPQTQTQMRPPRES
VEKHREVVYIRRLSDGGTGTGHATRIEISPSNESITYGNGKSNNNYSSAM
SRNPLGRSTGCLAAPAQPPPPSVHVKRSASSVVNVNSHKLPPPATSGGAA
DHICWRKFNVNPEEYSTELASFLDH
BO24962.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:03:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| blot-PA | 769 | CG3897-PA | 1..769 | 1..769 | 4053 | 100 | Plus |
| blot-PE | 809 | CG3897-PE | 47..809 | 7..769 | 4022 | 100 | Plus |
| blot-PC | 809 | CG3897-PC | 47..809 | 7..769 | 4022 | 100 | Plus |
| blot-PB | 976 | CG3897-PB | 214..976 | 7..769 | 4022 | 100 | Plus |
| blot-PD | 976 | CG3897-PD | 214..976 | 7..769 | 4022 | 100 | Plus |
