Clone BO24964 Report

Search the DGRC for BO24964

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:249
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG3517-RA
Protein status:BO24964.pep: Imported from assembly
Sequenced Size:1180

Clone Sequence Records

BO24964.complete Sequence

1180 bp assembled on 2010-06-03

GenBank Submission: KX796244

> BO24964.complete
GAAGTTATCAGTCGACATGCAGGCCCATCATGCGATGCCCGATTTCCGAT
GCCGGAATAATTGCCAGCACAAGGAGTGCCAGAGGCATGCTCCTTTGGGC
ATAATCGATCAGCACACCCAGTGCAAGTGCTTGGGCGAGGTAAATGCCTC
ATCGATTTTCCTAGAAAATGTCCTGGACCTGGCCAACACTTTGGCCCAGG
TGATGATCATCTGTGGACTGCACGAGTGCAAAGCGAAATCAACCGTGGAC
ATTATCACATATGCCTTCTTGCATTACGATCAGGTGTGCTATTGCATTGA
TACCACGCCCAAGAAGCGACTGAGAAAGGAGGATTTGTTCCACGAGCTGG
GCAAGAAGTCGCTGATGAACAAGGTGGAGGCCCACTTGGCCTATGCCATC
ATCAAGAGGGGATTCAAGGCCTTCTACTACGAGCCGAAAGTGGACTTGAC
CTACGATGAGCAAGGCAGACCCTCGTACAACGATGAATGCGTCTGGGTCC
ACGCAGCCAGGAAGTCAGCCGAGTCCTATGCCCGCTTCGATGGCCTCTCC
TGCGCCGAACAGTTGGCATACGAGGCCAAGATCAAAATAGCCTTCAAGAA
GTTCTACGATCGCATGCAGACGCGCAAGAGGCAGCCGGAGGGCGACGATT
GCAACTGCTGCTTCTGTGCCAAGAAGCGGGGACATCTGGTCTATGCCAAG
GAACCGACTCCCTGCACTTCCAACAAAAAGAAGCCCAAGCACGTGTGTCC
ATATTGCTGCAAGAAGAAGCAGAAGCAGCAGTACACACACCCTGCTCGCC
AGCCGGCCAAGTGCCCCAAGTGCCACAAGTCGCGCAAGTTCTGCTGCTGC
ACCAAAATGGACTTCAACTTGCAGTGGGTCAAGAGCATATGGGAGCGGCC
GGACTTCAATCAGTACTACAAGAACGAGATCGCCGAAATCGAGGACCGCC
TGGTCAAGGGAACCTGCTGGCTGCCGCCGGAGCCTGAGGAGAAGCTGCTC
GATGAGGGCGAGGGCGAGGAGGAGGAGGAAGCCCACCAGGAAATGTCGCC
GGAGGCTCTCCTCGCCCTCGGCGGCAAAACGGTGCCCACTATACCGGATG
AAGGAAACGGTTCTCCACTGGCCACCAAACAGCCGTCGATCACCGAGGGT
GAGGGCGAGACCGCAAGCTTTCTAGACCAT

BO24964.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3517-RA 1149 CG3517-PA 1..1146 17..1162 5730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3517-RA 1421 CG3517-RA 143..1288 17..1162 5730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19423912..19425057 1162..17 5730 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:50:30 has no hits.

BO24964.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-03 13:59:51 Download gff for BO24964.complete
Subject Subject Range Query Range Percent Splice Strand
CG3517-RA 143..1288 17..1164 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:20 Download gff for BO24964.complete
Subject Subject Range Query Range Percent Splice Strand
CG3517-RA 143..1288 17..1164 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:58:44 Download gff for BO24964.complete
Subject Subject Range Query Range Percent Splice Strand
CG3517-RA 143..1288 17..1164 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:58:44 Download gff for BO24964.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19423910..19425057 17..1164 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:20 Download gff for BO24964.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15249632..15250779 17..1164 99   Minus

BO24964.pep Sequence

Translation from 16 to 1180

> BO24964.pep
MQAHHAMPDFRCRNNCQHKECQRHAPLGIIDQHTQCKCLGEVNASSIFLE
NVLDLANTLAQVMIICGLHECKAKSTVDIITYAFLHYDQVCYCIDTTPKK
RLRKEDLFHELGKKSLMNKVEAHLAYAIIKRGFKAFYYEPKVDLTYDEQG
RPSYNDECVWVHAARKSAESYARFDGLSCAEQLAYEAKIKIAFKKFYDRM
QTRKRQPEGDDCNCCFCAKKRGHLVYAKEPTPCTSNKKKPKHVCPYCCKK
KQKQQYTHPARQPAKCPKCHKSRKFCCCTKMDFNLQWVKSIWERPDFNQY
YKNEIAEIEDRLVKGTCWLPPEPEEKLLDEGEGEEEEEAHQEMSPEALLA
LGGKTVPTIPDEGNGSPLATKQPSITEGEGETASFLDH

BO24964.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3517-PA 382 CG3517-PA 1..382 1..382 2118 100 Plus
CG13872-PA 613 CG13872-PA 40..207 49..214 281 32.1 Plus
CG9173-PA 433 CG9173-PA 26..287 36..278 259 28.9 Plus