BO24966.complete Sequence
3757 bp assembled on 2010-09-16
GenBank Submission: KX799781
> BO24966.complete
GAAGTTATCAGTCGACATGGATTACGTGTATTGCGGCACCGACCCCATCG
GGGCCTCCGAAGACATACTAAGTGTTTATGACGCGGGATCTGCGCCGGGA
AACGGGCACTTTTCGCCCAGCTTCAATGGATTCAACATCGGCACCACCGA
TCCGGAATATGTGGAGCTTGTGCCCGTGCTTGCCGACGGCGGGGAGCACT
TCGGCGTTTCCAGCGTGGCGTTCGACGACTACGAAGAGCTGCTGTGGATG
GGCAACCAGGGCGGCCACGTCACATCGTACTACACAAACTCCATGCAGAA
GTACACATCCTTTCAGGTCCACGCCACCGACATTGTGCGCGACATCTCCA
CCCTGGACTCCGGAGTGCTGGCGCTCACGCAGACCTCGCTGCGTCATCAG
ATCCGCAGGGGTCTGCCCAAGTTTACCTTCAAATCGAACAACATGAAGGA
GATGGTGAGCATGCTGCAGCTATCACCGCATCGTCTGGTCATGGCCGGAC
TGCAGGACGAGCTTATCGACTTCGACCTGCGCACGCTCAAGGAAACCCGC
ATAGAGCATGTGGGTGCCGGCGGATGCACGGTGCTACGCAAGAATTCACG
TTATCTGTTTGCCGGCGACCAGCTGGGAACGGTAACGTTGCGCGACCTGA
ACAGCCTGAGTGTTCAGCACACAATCAAGACGCACACCAACATCCTTTCG
GACTTCAGTGTCCAGGGAAATCTGCTAATCTCTTGCGGCTACAGCGGAAG
GCAAAATAACCTGGCCATCGACCGCTTCCTAATGGTCTACGATCTGCGCA
TGCTGCGCCTGATCGCGCCCATTCAAGTGATGATTGATCCGCAGATGTTG
AAGTTCCTGCCATCGCTGACATCCCAACTGGCCGTCGTGTCCAGCTACGG
CCAGGTTCAGCTGGTGGACACTGTGGAGCTCAGCGAGCCGCGAGTATCCA
TGTACCAGATCAACACCAACGGCAGCCAGTGCCTCAGCTTCGACATTAGC
TCCTCTTCACAGGCCATGGCATTTGGGGACCAGTCGGGCCACATCAACAT
GATTGCCGCTGTACAAACGCCTCAGCCGCAGTTCAATCTCTACTCGCGAA
GCACAGAGTTTGCGGACGTGGTGCCACAGCTGCCGATGGTCTCCATTACG
GACACCAACTTTCCGCTATCGTCGGTCATGCTACCGCACTTGACGACGGG
CACACAATGGTTCTCAGATTGGCCGGAGGAACTGCTGCGCTACCGCTACC
ACAGGCCCAAGACCATTGATCCCGAAGTGCTGAGCAACATGAAAATGCAG
GGACCGATTGGATACTCGCCAAACCCACGCACCGCCCGTCGTAATCAAAT
TCCGTACGTGATTGAGCAGGGCGGCGTGTGCAGTCCGAACGGAAATGGAA
CTGCGGCGGCGACCAAGGCGGAGAACGGTGTGAAAATCATTCCACGGCGG
TATCGCAAAGTCGAGCTGAAGTACACGAAGCTGGGCACCCAGGACTTTGA
CTTTGACCAGCATAATCAAACATGTTTCGCGGGGCTGGAGGCAACGCTAC
CGAACTCCTACTGCAATGCTATGCTACAGATTTTGTATTTCACCGACGCG
CTTCGCGTGAAGCTGCTGGAGCATTCGTGCATCAAGGAGTTTTGCCTGTC
CTGCGAACTAGGGTTCCTCTTCAACATGCTGGATAAAAGTACCGCTTCTT
CACCTTGCCAGGCCAGCAATTTCCTGCGATCTTTCCGCACTGTGCCAGAG
GCCTCGGCACTGGGATTGATTCTCACCGACCGCTCATCGAACGTCAATCT
AATATCGCTGATACAGAACTGGAACCGATTCATTTTGCATCAAATGCATT
ACGAAATATTCGATTCTAGCAAGAACGCATCCACCTACAGCGGATCTGTG
CAAACATCAACGAACGCGGAAAACGCGGGCTCTTCAGAAACAAGTGGCTC
CTCGGACCTTTACGATTCCATAAGTGATGAGAACTCCAAGGAGGACGATC
GGGAACGCAGTAAGATCAACGCAGAAACTGACATCAGTAAGATCTTTGGG
ACCAAGCAAATCTGTATAAACCGCTGCATCAAATGCCAAGAAGAGAAGAT
AAAGGAAAGCATTCTACTTGCCTGCAATTTGTCGTATCCCAACCACATCA
AAGATAGTGATCAGTATTTCAACTTTGGCACCATTTTGAAGCGATCTCTC
AGCTCCGAGAAGAGTATTCAGGCCTTCTGCGAGAGATGTAAGAAGTTTTC
GCCAACCAATCAGAGCGTGAAGGTGACTTCGCTTCCGCAAATTCTGTCCA
TTAACTGTGGCCTCAACAACGAAAAAGACATTACCTTCCTGAAGCGCCAG
CTCAATCGCTGCAGCGAAAAGACGACTGTTGATGCGGCCGCTTCCTTGAG
CACAAGCAAGCCGTGTCGATATGGAGCCAACTGTTCGCGAAGTGACTGCC
ATTTCATGCATCCGGATCGAAAATCTCCATCGCACACAAGCCAACCGAAT
GCTGTCAACAATTCTCCCAATGGACGCCAAAAGTCCTGGTTTCCCCTTAC
ATTTACTATGGGCATCAATGACCAAGGTGAGGTGCAGGTGCAAACTCAAT
CAGATGCAAGCAGTGGCAAATCGGAACAGGAGGAGGAAACGGAAAAGCCA
CCAACAAAGGGCTTGGACAACAATCGGATGTACGCGCTGCATGCCGTGGT
GTGCCAAGTCGATGATGGTACCCAAAAGAACTTGGTATCGTTGATAAATG
TGCAGCGGCCATACCACACCATGAAACTGGCTGAATCTGCAGATGACCCT
CAGAGTCAATGGTATATTTTTAATGATTTTAGCATATCGCCCGTTTCGCC
ACAAGAATCGGTATGGTTCACATTGGATTGGAAAGTTCCTTGCATACTCT
TCTACAGACACGTAGAGGATGACTCTGAGTCTGCTAGTACTACTAGCTCG
ACCGTCACGGAAAGTGAAGAAACCATTCCATCAGAGAGCAGCAGCGGCTC
GCCAACAAATCTATCCAACCCTTTTCTAGAGGAAATTGTGAGTCCTATGC
TAGGCAACTTAAGTGCAGACGCCACGCTGCAGCCCCTGCAGTCAGATGAA
ATGCCGCAGTCGGGTGATCTGGTCGCAATGGATGCCGAGTTCGTTACCCT
AAATCCAGAGGAAAATGAGATTCGCCCGGATGGCAAAACGGCGACCATTA
AGCCATGCCACATGAGTGTGGCCCGGATTTCATGTATACGAGGACAAGGC
CCGGCTGAAGGAGTTCCATTCATGGACGATTACATATCCACCCAGGAGAA
GGTCGTGGACTACCTAACTCAGTTCTCGGGAATCAAGCCTGGCGACTTGG
ACGCTAACTTCAGCAAAAAGCGACTGACTGCCTTGAAGTACTCATACCAG
AAATTAAAATACCTCGTTGACGTAGGAGTAATATTTGTCGGACATGGTCT
GAAGAACGACTTTAGGGTCATAAACATCTATGTACCGTCGGAGCAGATAA
TAGATACGGTGCACCTGTTTCACATGCCACATCATCGCATGGTTTCCCTA
AGATTTCTAGCCTGGCATTTCTTGGGTACTAAGATTCAGTCCGAGACGCA
CGACTCCATCGAAGATGCACGGACCACTCTGCAGCTCTACAAGCACTATT
TGAAGCTGCAGGAGGAGAAGAAGTTTGCCAACGCTCTCAAGAATCTTTAC
GAACGCGGAAAGCAGCTGCAGTGGAAGGTTCCAGAGGACGCAAGCTTTCT
AGACCAT
BO24966.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:33:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PAN2-RA | 3726 | CG8232-PA | 1..3723 | 17..3739 | 18615 | 100 | Plus |
| PAN2-RB | 3723 | CG8232-PB | 1..3720 | 17..3739 | 18535 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:34:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PAN2-RA | 4051 | CG8232-RA | 132..3854 | 17..3739 | 18615 | 100 | Plus |
| PAN2-RB | 4048 | CG8232-RB | 132..3851 | 17..3739 | 18535 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:33:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8928936..8930197 | 433..1694 | 6310 | 100 | Plus |
| 2R | 25286936 | 2R | 8931330..8931693 | 2469..2832 | 1820 | 100 | Plus |
| 2R | 25286936 | 2R | 8930709..8931007 | 1976..2274 | 1495 | 100 | Plus |
| 2R | 25286936 | 2R | 8932290..8932513 | 3243..3466 | 1120 | 100 | Plus |
| 2R | 25286936 | 2R | 8932013..8932226 | 3030..3243 | 1070 | 100 | Plus |
| 2R | 25286936 | 2R | 8931753..8931954 | 2831..3032 | 1010 | 100 | Plus |
| 2R | 25286936 | 2R | 8931068..8931266 | 2271..2469 | 995 | 100 | Plus |
| 2R | 25286936 | 2R | 8928458..8928649 | 72..263 | 960 | 100 | Plus |
| 2R | 25286936 | 2R | 8928709..8928878 | 263..432 | 850 | 100 | Plus |
| 2R | 25286936 | 2R | 8932742..8932906 | 3575..3739 | 825 | 100 | Plus |
| 2R | 25286936 | 2R | 8930258..8930380 | 1694..1816 | 615 | 100 | Plus |
| 2R | 25286936 | 2R | 8932569..8932682 | 3464..3577 | 570 | 100 | Plus |
| 2R | 25286936 | 2R | 8930431..8930533 | 1814..1916 | 515 | 100 | Plus |
| 2R | 25286936 | 2R | 8930590..8930650 | 1916..1976 | 305 | 100 | Plus |
| 2R | 25286936 | 2R | 8928300..8928357 | 17..74 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:33:58 has no hits.
BO24966.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-16 14:16:45 Download gff for
BO24966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8232-RA | 127..3849 | 17..3741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:49 Download gff for
BO24966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8232-RA | 132..3854 | 17..3741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:13:52 Download gff for
BO24966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PAN2-RA | 132..3854 | 17..3741 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:13:52 Download gff for
BO24966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8932571..8932680 | 3466..3575 | 100 | -> | Plus |
| 2R | 8932743..8932906 | 3576..3741 | 98 | | Plus |
| 2R | 8928300..8928354 | 17..71 | 100 | -> | Plus |
| 2R | 8928458..8928648 | 72..262 | 100 | -> | Plus |
| 2R | 8928709..8928878 | 263..432 | 100 | -> | Plus |
| 2R | 8928936..8930197 | 433..1694 | 100 | -> | Plus |
| 2R | 8930259..8930380 | 1695..1816 | 100 | -> | Plus |
| 2R | 8930434..8930533 | 1817..1916 | 100 | -> | Plus |
| 2R | 8930591..8930650 | 1917..1976 | 100 | -> | Plus |
| 2R | 8930710..8931005 | 1977..2272 | 100 | -> | Plus |
| 2R | 8931070..8931266 | 2273..2469 | 100 | -> | Plus |
| 2R | 8931331..8931693 | 2470..2832 | 100 | -> | Plus |
| 2R | 8931755..8931953 | 2833..3031 | 100 | -> | Plus |
| 2R | 8932015..8932226 | 3032..3243 | 100 | -> | Plus |
| 2R | 8932291..8932512 | 3244..3465 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:49 Download gff for
BO24966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4815805..4815859 | 17..71 | 100 | -> | Plus |
| arm_2R | 4815963..4816153 | 72..262 | 100 | -> | Plus |
| arm_2R | 4816214..4816383 | 263..432 | 100 | -> | Plus |
| arm_2R | 4816441..4817702 | 433..1694 | 100 | -> | Plus |
| arm_2R | 4817764..4817885 | 1695..1816 | 100 | -> | Plus |
| arm_2R | 4817939..4818038 | 1817..1916 | 100 | -> | Plus |
| arm_2R | 4818096..4818155 | 1917..1976 | 100 | -> | Plus |
| arm_2R | 4818215..4818510 | 1977..2272 | 100 | -> | Plus |
| arm_2R | 4818575..4818771 | 2273..2469 | 100 | -> | Plus |
| arm_2R | 4818836..4819198 | 2470..2832 | 100 | -> | Plus |
| arm_2R | 4819260..4819458 | 2833..3031 | 100 | -> | Plus |
| arm_2R | 4819520..4819731 | 3032..3243 | 100 | -> | Plus |
| arm_2R | 4819796..4820017 | 3244..3465 | 100 | -> | Plus |
| arm_2R | 4820076..4820185 | 3466..3575 | 100 | -> | Plus |
| arm_2R | 4820248..4820411 | 3576..3741 | 98 | | Plus |
BO24966.pep Sequence
Translation from 16 to 3757
> BO24966.pep
MDYVYCGTDPIGASEDILSVYDAGSAPGNGHFSPSFNGFNIGTTDPEYVE
LVPVLADGGEHFGVSSVAFDDYEELLWMGNQGGHVTSYYTNSMQKYTSFQ
VHATDIVRDISTLDSGVLALTQTSLRHQIRRGLPKFTFKSNNMKEMVSML
QLSPHRLVMAGLQDELIDFDLRTLKETRIEHVGAGGCTVLRKNSRYLFAG
DQLGTVTLRDLNSLSVQHTIKTHTNILSDFSVQGNLLISCGYSGRQNNLA
IDRFLMVYDLRMLRLIAPIQVMIDPQMLKFLPSLTSQLAVVSSYGQVQLV
DTVELSEPRVSMYQINTNGSQCLSFDISSSSQAMAFGDQSGHINMIAAVQ
TPQPQFNLYSRSTEFADVVPQLPMVSITDTNFPLSSVMLPHLTTGTQWFS
DWPEELLRYRYHRPKTIDPEVLSNMKMQGPIGYSPNPRTARRNQIPYVIE
QGGVCSPNGNGTAAATKAENGVKIIPRRYRKVELKYTKLGTQDFDFDQHN
QTCFAGLEATLPNSYCNAMLQILYFTDALRVKLLEHSCIKEFCLSCELGF
LFNMLDKSTASSPCQASNFLRSFRTVPEASALGLILTDRSSNVNLISLIQ
NWNRFILHQMHYEIFDSSKNASTYSGSVQTSTNAENAGSSETSGSSDLYD
SISDENSKEDDRERSKINAETDISKIFGTKQICINRCIKCQEEKIKESIL
LACNLSYPNHIKDSDQYFNFGTILKRSLSSEKSIQAFCERCKKFSPTNQS
VKVTSLPQILSINCGLNNEKDITFLKRQLNRCSEKTTVDAAASLSTSKPC
RYGANCSRSDCHFMHPDRKSPSHTSQPNAVNNSPNGRQKSWFPLTFTMGI
NDQGEVQVQTQSDASSGKSEQEEETEKPPTKGLDNNRMYALHAVVCQVDD
GTQKNLVSLINVQRPYHTMKLAESADDPQSQWYIFNDFSISPVSPQESVW
FTLDWKVPCILFYRHVEDDSESASTTSSTVTESEETIPSESSSGSPTNLS
NPFLEEIVSPMLGNLSADATLQPLQSDEMPQSGDLVAMDAEFVTLNPEEN
EIRPDGKTATIKPCHMSVARISCIRGQGPAEGVPFMDDYISTQEKVVDYL
TQFSGIKPGDLDANFSKKRLTALKYSYQKLKYLVDVGVIFVGHGLKNDFR
VINIYVPSEQIIDTVHLFHMPHHRMVSLRFLAWHFLGTKIQSETHDSIED
ARTTLQLYKHYLKLQEEKKFANALKNLYERGKQLQWKVPEDASFLDH
BO24966.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:31:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PAN2-PA | 1241 | CG8232-PA | 1..1241 | 1..1241 | 6484 | 100 | Plus |
| PAN2-PB | 1240 | CG8232-PB | 1..1240 | 1..1241 | 6463 | 99.8 | Plus |
