BO24969.complete Sequence
2860 bp assembled on 2010-06-25
GenBank Submission: KX796943
> BO24969.complete
GAAGTTATCAGTCGACATGTTCCTCAGTGGCTATTGGTTGCAGGTGGTGC
TCTCCTGGGCGGTGGTGGCCTTTGCCACGGCCACGGTTGTGGTGGCGGTG
CAGAAGGCTCAGCTGGAAAGGGACCTCCGCGATGTGCAGGACAAGATCGA
TGTGTTCGAGGAGTGGAGCGGAGAGAGCCGCACTCGCATGAAGCGTGAAG
ATACGACGGATTACCGCCTGCCCACGAATCTGGTGCCCACGCACTACGAG
CTCTACTGGCATCCGGATCTGGAGACAGGAAACTTCACCGGACAACAGAG
GATCAGCATCAAGGTGGTGGAGGCCACTAATCAGATTATTCTGCACTCAT
ATCTCCTGGATATCACAAGTGTCTATGTGCTGAATAGAGAGGTGGAAAAG
TTTGAGCTTGAGGAGGAACGTCAGTTCCTGATCATAACTTTGACGGAAGA
GCTGGCGGTGGACGCCAGCATTACTCTCGGAATCATTTTTGGTGGACAGA
TGAAGGATAAGCTTGTGGGTCTCTACAGCAGTACATATCTAAACGAGGCA
GGAGCTACCAGAACCATTTCTACGACGAAATTCGAACCCACTTACGCGCG
TCAGGCCTTCCCATGCTTCGATGAACCAGCCATGAAGGCCACATTCGCCA
TTACAGTGGTTCATCCATCGGGATCCTACCACGCCGTTTCCAACATGCAA
CAAACGGAATCCAATTATCTGGGTGACTATACTGAGGCCATCTTCGAGAC
GAGTGTGTCGATGAGCACCTACCTGGTATGCATCATTGTGTCCGACTTCG
CTTCCCAATCGACCACGGTGAAGGCCAACGGAATTGGCGAGGACTTCTCC
ATGCAAGCCTATGCCACCTCGCATCAGATCAACAAGGTCGAGTTTGCTCT
GGAGTTCGGACAAGCTGTCACGGAGTACTATATTCAGTACTATAAGGTGC
CCTATCCGCTGACCAAACTGGACATGGCCGCCATTCCCGACTTTGCATCT
GGGGCCATGGAGCACTGGGGATTGGTGACTTACAGAGAGACCGCTCTGCT
GTACGATCCCAGTTACAGTTCCACAGCGAACAAACAATCGATAGCCGGAA
CACTGGCCCATGAGATTGCACACCAGTGGTTCGGAAACCTGGTCACCATG
AAGTGGTGGAACGATCTGTGGCTGAACGAGGGATTCGCCCGCTACATGCA
GTACAAGGGAGTCAATGCTGTGCACCCGGACTGGGGAATGCTGGAGCAAT
TCCAAATCGTGGCCCTGCAACCCGTGTTGTTATACGATGCCAAGCTATCA
TCCCATCCGATTGTCCAGAAGGTAGAAAGCCCCGATGAAATTACGGCCAT
ATTCGACACCATCAGTTACGAAAAGGGAGGATCCGTGATCCGCATGCTGG
AGACACTTGTGGGCGCCGAAAAGTTTGAGGAGGCGGTGACCAATTACCTG
GTCAAGCATCAGTTCAATAACACGGTGACCGACGATTTCCTCACCGAAGT
CGAAGCTGTGGTAACTGACTTGGATATCAAGAAACTGATGCTCACCTGGA
CCGAACAGATGGGTTATCCGGTGTTGAATGTCTCCAAGGTTGCAGATGGT
AGTTTTAAGGTTACCCAGCAGCGATTCCTCTCCAATCCAGCCAGTTACGA
GGAAGCCCCTTCAGATAGCGCATACGGATACAAATGGAGTGTTCCGATTA
CCTGGTTTGCTGATGATGGTTCAGAGAACAGCTTCATATACGACTACGAT
GTGGACTCTGTGGGTATTGCCGTGCCCAGCGAGGTGCAGTGGATCAAGTT
GAATGTCAACCAAACGGGCTACTATCGGGTTAACTACGAGGAGAGCCTGT
GGGCCCTGCTCATCCAGCAGCTAACCACCAGTCCCGCTCGATTCGAAATC
GCCGATCGTGGCCATCTTTTGAACGATGCCTTCGCCCTGGCGGATGCCAA
CCAACTATCCTACAAAATTCCTCTGGATATGACCGCTTACTTGGCCCAGG
AGCGCGACTTCGTGCCCTGGTATGTGGCCTCCAATAAGCTGAGGTCGCTC
CATCGCAGTCTCATGTTCAGCGAGGGATACGTGTCGTACCTCACCTATGC
CAGAAGTCTGATCGCTGGCGTATACGAGGAGGTGGGTTGGACTGTGGACG
CCGACAATCACTTGAAGAACCGCCTGCGTGTTTCCATTTTGACCGCCGCC
TGTGCCCTGGGTGTTCCAGATTGTCTGCAGCAGGCTTCCGAGCGCTTCAG
CACCTTCCTGGAGAATCCGACCACTCGACCTTCCCCCGATCTTCGCGAGA
TTGTCTACTACTACGGCATGCAGCAGTCCACCAGCCAATCGAGCTGGGAT
CAGTTGTTCCAACTCTTTGTGGCCGAAACCGATGCCAGCGAGAAACTGAA
GCTGATGTACGGATTGTCTGGCGTACGGAACAGCCAGTATCTGTTCGACT
TCCTGGCACAGGCCTCCAGTGATGAGAGCATCGTTCGCTCCCAGGACTAT
TTCACCTGTGTGCAGTACATAGCCGCCAATCCTGTGGGTGAACCGGTGGT
CTGGGAATTCTACCGCGAACAGTGGCCCCAACTCACCACCCGTTTTGGCC
TGAACAACCGCAACTTTGGACGACTTATCGCCCAGATTACGGCCAACTTT
GCCAGCTCCGTGAAACTGGAGGAGGTTCAGCACTTCTTCTCCAAGTACCC
CGAATCGGGAGCTGGAGCTAACTCCCGGTTGGAGGCCGTGGAAACCATCA
AGTACAACATCGAATGGCTATCCAGAAACGAAGCTGACATCACCGACTGG
CTAAGTGGAACGGCCTCGCCGCTGACCAAGAAAAACCAATTGGCAAGCTT
TCTAGACCAT
BO24969.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:46:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8774-RA | 2829 | CG8774-PA | 1..2826 | 17..2842 | 14130 | 100 | Plus |
| CG8774-RB | 2658 | CG8774-PB | 1..2655 | 188..2842 | 13275 | 100 | Plus |
| SP1029-RE | 2799 | CG11956-PE | 1019..1104 | 1104..1189 | 310 | 90.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:46:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8774-RA | 2966 | CG8774-RA | 35..2860 | 17..2842 | 14130 | 100 | Plus |
| CG8774-RB | 3089 | CG8774-RB | 184..2983 | 43..2842 | 14000 | 100 | Plus |
| SP1029-RE | 2981 | CG11956-RE | 1072..1157 | 1104..1189 | 310 | 90.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:46:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13300545..13301474 | 1240..2169 | 4650 | 100 | Plus |
| 3R | 32079331 | 3R | 13301556..13302228 | 2170..2842 | 3365 | 100 | Plus |
| 3R | 32079331 | 3R | 13299949..13300483 | 706..1240 | 2675 | 100 | Plus |
| 3R | 32079331 | 3R | 13299260..13299616 | 205..561 | 1785 | 100 | Plus |
| 3R | 32079331 | 3R | 13299014..13299202 | 17..205 | 945 | 100 | Plus |
| 3R | 32079331 | 3R | 13299748..13299896 | 559..707 | 745 | 100 | Plus |
| 3R | 32079331 | 3R | 29247179..29247264 | 1189..1104 | 310 | 90.7 | Minus |
| 3R | 32079331 | 3R | 13310679..13310763 | 1104..1188 | 305 | 90.6 | Plus |
| 3R | 32079331 | 3R | 29236921..29237006 | 1189..1104 | 250 | 86 | Minus |
| 3R | 32079331 | 3R | 13295909..13295991 | 953..1035 | 235 | 85.5 | Plus |
| 3R | 32079331 | 3R | 29242632..29242712 | 1189..1109 | 225 | 85.2 | Minus |
| 3R | 32079331 | 3R | 26942461..26942545 | 1124..1208 | 185 | 81.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:46:13 has no hits.
BO24969.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:28:22 Download gff for
BO24969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8774-RA | 39..2859 | 22..2844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:06 Download gff for
BO24969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8774-RA | 40..2860 | 22..2844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:24:42 Download gff for
BO24969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8774-RA | 40..2860 | 22..2844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:24:42 Download gff for
BO24969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13299019..13299202 | 22..205 | 100 | -> | Plus |
| 3R | 13299261..13299616 | 206..561 | 100 | -> | Plus |
| 3R | 13299751..13299895 | 562..706 | 100 | -> | Plus |
| 3R | 13299950..13300483 | 707..1240 | 100 | -> | Plus |
| 3R | 13300546..13301474 | 1241..2169 | 100 | -> | Plus |
| 3R | 13301556..13302228 | 2170..2844 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:06 Download gff for
BO24969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9124741..9124924 | 22..205 | 100 | -> | Plus |
| arm_3R | 9124983..9125338 | 206..561 | 100 | -> | Plus |
| arm_3R | 9125473..9125617 | 562..706 | 100 | -> | Plus |
| arm_3R | 9125672..9126205 | 707..1240 | 100 | -> | Plus |
| arm_3R | 9126268..9127196 | 1241..2169 | 100 | -> | Plus |
| arm_3R | 9127278..9127950 | 2170..2844 | 99 | | Plus |
BO24969.pep Sequence
Translation from 16 to 2860
> BO24969.pep
MFLSGYWLQVVLSWAVVAFATATVVVAVQKAQLERDLRDVQDKIDVFEEW
SGESRTRMKREDTTDYRLPTNLVPTHYELYWHPDLETGNFTGQQRISIKV
VEATNQIILHSYLLDITSVYVLNREVEKFELEEERQFLIITLTEELAVDA
SITLGIIFGGQMKDKLVGLYSSTYLNEAGATRTISTTKFEPTYARQAFPC
FDEPAMKATFAITVVHPSGSYHAVSNMQQTESNYLGDYTEAIFETSVSMS
TYLVCIIVSDFASQSTTVKANGIGEDFSMQAYATSHQINKVEFALEFGQA
VTEYYIQYYKVPYPLTKLDMAAIPDFASGAMEHWGLVTYRETALLYDPSY
SSTANKQSIAGTLAHEIAHQWFGNLVTMKWWNDLWLNEGFARYMQYKGVN
AVHPDWGMLEQFQIVALQPVLLYDAKLSSHPIVQKVESPDEITAIFDTIS
YEKGGSVIRMLETLVGAEKFEEAVTNYLVKHQFNNTVTDDFLTEVEAVVT
DLDIKKLMLTWTEQMGYPVLNVSKVADGSFKVTQQRFLSNPASYEEAPSD
SAYGYKWSVPITWFADDGSENSFIYDYDVDSVGIAVPSEVQWIKLNVNQT
GYYRVNYEESLWALLIQQLTTSPARFEIADRGHLLNDAFALADANQLSYK
IPLDMTAYLAQERDFVPWYVASNKLRSLHRSLMFSEGYVSYLTYARSLIA
GVYEEVGWTVDADNHLKNRLRVSILTAACALGVPDCLQQASERFSTFLEN
PTTRPSPDLREIVYYYGMQQSTSQSSWDQLFQLFVAETDASEKLKLMYGL
SGVRNSQYLFDFLAQASSDESIVRSQDYFTCVQYIAANPVGEPVVWEFYR
EQWPQLTTRFGLNNRNFGRLIAQITANFASSVKLEEVQHFFSKYPESGAG
ANSRLEAVETIKYNIEWLSRNEADITDWLSGTASPLTKKNQLASFLDH
BO24969.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:03:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8774-PA | 942 | CG8774-PA | 1..942 | 1..942 | 4897 | 100 | Plus |
| CG8774-PB | 885 | CG8774-PB | 1..885 | 58..942 | 4609 | 100 | Plus |
| CG8773-PB | 994 | CG8773-PB | 120..989 | 65..929 | 2425 | 52.8 | Plus |
| CG32473-PA | 1012 | CG32473-PA | 124..1011 | 56..942 | 2239 | 48.7 | Plus |
| CG32473-PB | 903 | CG32473-PB | 20..902 | 66..942 | 2158 | 47.6 | Plus |
