BO24975.complete Sequence
1459 bp assembled on 2010-06-03
GenBank Submission: KX796770
> BO24975.complete
GAAGTTATCAGTCGACATGCCCGCATTTAAAGTTAAGGTGAAGTGGGGCC
GGGAGCTCTACACAGATATCGTTGTAAACACCGACGAGGAGCCGATTTTG
TTTAAGGCTCAGTTGTTTGCCCTCACTGGCGTTCAACCGGATCGCCAGAA
AGTTATGTGCAAGGGCGGCATTCTGAAGGATGACCAGTGGAATCTGCAGA
TCAAGGACGGCGCTGTGGTCCTGTTGCTGGGCAGCAAGGAAAGTGTTCCA
GAAGTGCCTGCCACTCCTGTCAAATTCATTGAGGACATGAATGAAGCTGA
GGCAGCCACAGCGATGCGTCTACCGGCTGGGCTGACAAATCTGGGCAATA
CGTGCTACATGAATGCCACTGTCCAGTGCCTGAATGCAGTGCCCGAGCTT
CGCACTGCCCTGAGCACTTTCAGTAATGATGGAACCGACACTATGTCGAC
CGCATTTTCCATATCGTCTGCCATGAAGTCTATATTTGCTCAAATGGAGA
AGGGCACCACCGTGACGCCAATTGTGCTGCTGCAGGCATTGCACCGGGCA
TCACCGCAATTTGCCCAGACTGGCGAAAATGGCACATACAGGCAGCAGGA
CGCCAATGAGTGCTGGGCGGAGATCCTGAAAATGTTGCAGCAAAAGCTGC
GGCCAAAAAACCAGGAACCCTCGAATACTGTCCAGAAAAGGCACAGCTCG
TTTATCGACCAGTTTTTTGGTGGCACTTTTGAAGTTAAGATGAGCTCAGA
AGAGGATCCCGATGAACCTTCAACAGTAACAAGCGAAAATTTCTTGCAGT
TAAGTTGCTTCATTTCCATGGATGTGAAGTACATGCAGAGTGGTCTGAAA
TCTAAAATGAAAGAGCAGCTGGTGAAAAAATCAGAAACCCTGGGACGCGA
TGCAAAGTACATTCGAACTTACTTGGTGAGCCGACTTCCAGCCTATCTCA
CCGTACAATTCGTGCGCTTTCAATACAAAGGAAAGGAGGGCATAAATGCC
AAGGTGTTGAAGGATATCAAATTCCCCATTGACTTCGATGCCTTTGAGTT
GTGTACCCCCGAATTGCAAAACAAGCTCTGCCCAATGCGTTCGAAATTCA
AGGATCTGGAAGACAAGAAAATGGAAGTTGACGTTGTCAAACGCAATGAA
CCCAACGAAGAGAAGAAGGACGTTAAGTACGAGCAGTTCTGGTTCGACGA
CGACTTGGGCAGCAACAATTCGGGATACTATACGCTGCAGGCGGTGCTCA
CGCACAAGGGACGCTCCAGTTCGTCGGGTCATTATGTGGCCTGGGTTCGC
TCCAGCGGCGATGTGTGGTTCAAGTTCGATGATGATGAGGTCTCCGCCGT
GGCCACGGACGAGATTTTGCGGCTTTCCGGTGGCGGAGACTGGCATTGCG
CCTATGTCCTGTTATATGCGCCCAGACGTTTGGAGAAACTAGCAAGCTTT
CTAGACCAT
BO24975.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:51:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5384-RB | 1428 | CG5384-PB | 1..1425 | 17..1441 | 7125 | 100 | Plus |
| CG5384-RA | 1428 | CG5384-PA | 1..1425 | 17..1441 | 7125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:51:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5384-RB | 1632 | CG5384-RB | 85..1510 | 16..1441 | 7130 | 100 | Plus |
| CG5384-RA | 1555 | CG5384-RA | 59..1484 | 16..1441 | 7130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:51:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10312387..10312908 | 1441..920 | 2610 | 100 | Minus |
| 2L | 23513712 | 2L | 10313306..10313689 | 696..313 | 1920 | 100 | Minus |
| 2L | 23513712 | 2L | 10314063..10314241 | 209..31 | 895 | 100 | Minus |
| 2L | 23513712 | 2L | 10313084..10313242 | 853..695 | 795 | 100 | Minus |
| 2L | 23513712 | 2L | 10313901..10314005 | 313..209 | 525 | 100 | Minus |
| 2L | 23513712 | 2L | 10312962..10313027 | 919..854 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:51:16 has no hits.
BO24975.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-03 13:59:58 Download gff for
BO24975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5384-RA | 86..1510 | 17..1443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:26 Download gff for
BO24975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5384-RA | 60..1484 | 17..1443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:59:01 Download gff for
BO24975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5384-RA | 60..1484 | 17..1443 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:59:01 Download gff for
BO24975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10312385..10312908 | 920..1443 | 99 | <- | Minus |
| 2L | 10312962..10313027 | 854..919 | 100 | <- | Minus |
| 2L | 10313084..10313240 | 697..853 | 100 | <- | Minus |
| 2L | 10313306..10313688 | 314..696 | 100 | <- | Minus |
| 2L | 10313901..10314005 | 209..313 | 100 | <- | Minus |
| 2L | 10314064..10314239 | 33..208 | 100 | <- | Minus |
| 2L | 10314296..10314311 | 17..32 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:26 Download gff for
BO24975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10312385..10312908 | 920..1443 | 99 | <- | Minus |
| arm_2L | 10312962..10313027 | 854..919 | 100 | <- | Minus |
| arm_2L | 10313084..10313240 | 697..853 | 100 | <- | Minus |
| arm_2L | 10313306..10313688 | 314..696 | 100 | <- | Minus |
| arm_2L | 10313901..10314005 | 209..313 | 100 | <- | Minus |
| arm_2L | 10314064..10314239 | 33..208 | 100 | <- | Minus |
| arm_2L | 10314296..10314311 | 17..32 | 100 | | Minus |
BO24975.pep Sequence
Translation from 16 to 1459
> BO24975.pep
MPAFKVKVKWGRELYTDIVVNTDEEPILFKAQLFALTGVQPDRQKVMCKG
GILKDDQWNLQIKDGAVVLLLGSKESVPEVPATPVKFIEDMNEAEAATAM
RLPAGLTNLGNTCYMNATVQCLNAVPELRTALSTFSNDGTDTMSTAFSIS
SAMKSIFAQMEKGTTVTPIVLLQALHRASPQFAQTGENGTYRQQDANECW
AEILKMLQQKLRPKNQEPSNTVQKRHSSFIDQFFGGTFEVKMSSEEDPDE
PSTVTSENFLQLSCFISMDVKYMQSGLKSKMKEQLVKKSETLGRDAKYIR
TYLVSRLPAYLTVQFVRFQYKGKEGINAKVLKDIKFPIDFDAFELCTPEL
QNKLCPMRSKFKDLEDKKMEVDVVKRNEPNEEKKDVKYEQFWFDDDLGSN
NSGYYTLQAVLTHKGRSSSSGHYVAWVRSSGDVWFKFDDDEVSAVATDEI
LRLSGGGDWHCAYVLLYAPRRLEKLASFLDH
BO24975.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:41:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5384-PB | 475 | CG5384-PB | 1..475 | 1..475 | 2473 | 100 | Plus |
| CG5384-PA | 475 | CG5384-PA | 1..475 | 1..475 | 2473 | 100 | Plus |
