BO24976.complete Sequence
856 bp assembled on 2010-06-03
GenBank Submission: KX799358
> BO24976.complete
GAAGTTATCAGTCGACATGCGAAATAAATTTCAATCCGCTATTAGGGGCG
TAACGCGACAATACATTATAAGATCGTGGCCCCGAGGCAGAGAGCTATTG
AGGACGCAACTGATTATCCCGCCATCTTCTACATCTAGCCCATTTACCTG
TAGAAACTACTCAAAGTTTAGCACACATTTGTCTATGGAGCGGGCGTTGG
AGTTGCTATGCAACCTTGATGACGAGGAACGCGGCAACCTGCGCTCCGCT
CTTGGCAGGCTAGATGCCGACAAGGAAAAAAAATTATACGAGAGTCAACT
GGCTTTCGGTAGTTGGCGCACTCGCTTCGGACGACTTTCTAATAAGACGG
AATTGGGCCAAGTTATTGCGGGAACTTTTTGCGCAGTGCCCGATGATTGG
CTGCGAAAAAAATTGGTTGAGACGGCAGCATCCCCCACGGCAGGTCAATT
GTACAGCATTTTCTTTGTAAATGCAGTGCCGTTTATCGCTTTCGGATTCC
TTGACAATTTCATAATGATCATGGCGGGTGAATACATTGAATATTATTTG
GGCCACTTTATAACGCTGTCTACAATGGCAGCCGCAGGACTAGGAAACAC
CATAAGCGATATTTTAGGCATCACTATGGCCACCTACGTTGAGAATGGGT
GCCAGATATTGGGTCTAAAGCAGCCCAATTTGACTCCAGCGCAATTTGAA
TTAAAGTCTAGCAAGCGGTCTTCAAGTTACGGACGGATTGTCGGGATCAC
TGTAGGCTGTTTGCTTGGAATGTGTCCTTTATGGTTTATGGATGAAAAAG
CAGATAAGGTGAATGTAAAAGATGAAATCCCGAAAAATGCAAGCTTTCTA
GACCAT
BO24976.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:52:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17715-RB | 825 | CG17715-PB | 1..822 | 17..838 | 4110 | 100 | Plus |
CG17715-RD | 825 | CG17715-PD | 1..822 | 17..838 | 4110 | 100 | Plus |
CG17715-RG | 810 | CG17715-PG | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:52:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17715-RB | 1624 | CG17715-RB | 293..1114 | 17..838 | 4110 | 100 | Plus |
CG17715-RD | 5581 | CG17715-RD | 352..1173 | 17..838 | 4110 | 100 | Plus |
CG17715-RG | 1439 | CG17715-RG | 293..1084 | 17..808 | 3960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:52:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 808242..808520 | 295..17 | 1395 | 100 | Minus |
2L | 23513712 | 2L | 22844571..22844849 | 17..295 | 1395 | 100 | Plus |
2R | 25286936 | 2R | 803458..803663 | 731..526 | 1030 | 100 | Minus |
2L | 23513712 | 2L | 22849428..22849633 | 526..731 | 1030 | 100 | Plus |
2R | 25286936 | 2R | 803999..804121 | 416..294 | 615 | 100 | Minus |
2L | 23513712 | 2L | 22848970..22849092 | 294..416 | 615 | 100 | Plus |
2R | 25286936 | 2R | 803291..803402 | 838..727 | 545 | 99.1 | Minus |
2L | 23513712 | 2L | 22849689..22849800 | 727..838 | 545 | 99.1 | Plus |
2R | 25286936 | 2R | 803717..803785 | 527..459 | 345 | 100 | Minus |
2L | 23513712 | 2L | 22849306..22849374 | 459..527 | 345 | 100 | Plus |
2R | 25286936 | 2R | 803836..803878 | 458..416 | 215 | 100 | Minus |
2L | 23513712 | 2L | 22849213..22849255 | 416..458 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:52:10 has no hits.
BO24976.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-03 14:00:00 Download gff for
BO24976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17715-RD | 306..1127 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:28 Download gff for
BO24976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17715-RD | 352..1173 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:59:21 Download gff for
BO24976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17715-RD | 352..1173 | 17..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:59:21 Download gff for
BO24976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22844571..22844847 | 17..293 | 100 | -> | Plus |
2L | 22848970..22849092 | 294..416 | 100 | -> | Plus |
2L | 22849214..22849255 | 417..458 | 100 | -> | Plus |
2L | 22849306..22849373 | 459..526 | 100 | -> | Plus |
2L | 22849429..22849632 | 527..730 | 100 | -> | Plus |
2L | 22849693..22849800 | 731..840 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:28 Download gff for
BO24976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22741702..22741824 | 294..416 | 100 | -> | Plus |
arm_2L | 22741946..22741987 | 417..458 | 100 | -> | Plus |
arm_2L | 22742038..22742105 | 459..526 | 100 | -> | Plus |
arm_2L | 22742161..22742364 | 527..730 | 100 | -> | Plus |
arm_2L | 22742425..22742532 | 731..840 | 98 | | Plus |
arm_2L | 22737303..22737579 | 17..293 | 100 | -> | Plus |
BO24976.pep Sequence
Translation from 16 to 856
> BO24976.pep
MRNKFQSAIRGVTRQYIIRSWPRGRELLRTQLIIPPSSTSSPFTCRNYSK
FSTHLSMERALELLCNLDDEERGNLRSALGRLDADKEKKLYESQLAFGSW
RTRFGRLSNKTELGQVIAGTFCAVPDDWLRKKLVETAASPTAGQLYSIFF
VNAVPFIAFGFLDNFIMIMAGEYIEYYLGHFITLSTMAAAGLGNTISDIL
GITMATYVENGCQILGLKQPNLTPAQFELKSSKRSSSYGRIVGITVGCLL
GMCPLWFMDEKADKVNVKDEIPKNASFLDH
BO24976.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:41:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17715-PB | 274 | CG17715-PB | 1..274 | 1..274 | 1422 | 100 | Plus |
CG17715-PD | 274 | CG17715-PD | 1..274 | 1..274 | 1422 | 100 | Plus |
CG17715-PG | 269 | CG17715-PG | 1..267 | 1..267 | 1373 | 98.9 | Plus |
CG17715-PH | 268 | CG17715-PH | 1..268 | 1..274 | 1372 | 97.4 | Plus |
CG17715-PC | 233 | CG17715-PC | 1..233 | 1..274 | 1150 | 84.7 | Plus |