Clone BO24978 Report

Search the DGRC for BO24978

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:249
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG7083-RA
Protein status:BO24978.pep: Imported from assembly
Sequenced Size:1348

Clone Sequence Records

BO24978.complete Sequence

1348 bp assembled on 2010-06-03

GenBank Submission: KX797044

> BO24978.complete
GAAGTTATCAGTCGACATGCTAGATCTGGAGATCGTGCCGGAGATTTCCC
TGGGCTGCGATGCCTGGGAATTTGTGCTGGGCATGCACTTCTCGCAGGCT
ATCGCCATCATCCAGTCGCAGGTGGGCATCATCAAGGGAGTCCAGGTGCT
GTACTCGGATACCACTCCCCTGGGCGTGGACATCATTATCAACCTGCCAC
AGGATGGCGTTCGCTTGATCTTTGATCCCGTCAGTCAGCGTTTGAAGACC
ATCGAGGTTTTCAACATGAAACTGGTGAAGCTGCGGTATTTCGGCGTATA
CTTCAATTCCCCGGAGGTGCTGCCGAGTATCGAGCAAATCGAGCACTCCT
TTGGAGCCACACATCCTGGGGTTTACGATGCAGCCAAACAATTGTTTGCT
CTACACTTTCGCGGGCTGAGTTTCTACTTTCCGGTGGACAGCAAGCTGCA
CTCGGGCTACGCCCATGGACTGAGTTCTCTGGTTTTCCTGAATGGCGCCT
CACCCGTCGTGTCCAAGATGTCTCTCTACGCAGGCAGCAATGTGTTGGAG
AACAGGGTACCATCTCTTCCCTTGTCCTGCTATCACCGCCAGATGTATTT
GGAATCGGCCACTGTTCTCCGAACCGCCTTTGGTCACACGAAGGGTCTGA
AGCTGAAGCTCTTTACTGAGGGTTCAGGAAGGGCTTTGGAGCCACGCCGT
CAGTGCTTTACGCGAGAGCTGCTCTTCGGCGATAGCTGCGAGGATGTGGC
CACCAGTCTTGGAGCACCCAATCGTATATTCTTCAAGAGCGAGGACAAAA
TGAAGATACACAGCTCGAGTGTCAATCGACAAGCACAGAGCAAGCGAAGC
GATATTTTCTTTAACTACTTTACACTTGGCATCGATGTGCTCTTTGATGC
ACGGACGCAGACCTGCAAGAAATTCATTCTGCACACCAACTACCCCGGTC
ACTTCAACTTTAATATGTACCATCGCTGCGAGTTCCAGTTCCTGCTGCAG
GCGGATCACCCTTCGATGAGTGATAGTGGTCACGATTTGGTGACGCCGAC
TAAGCAGGAACATGTGAACATAACCGCCTACACCAAATGGGACGCGATCA
GCAGCGCATTGGCCACCTCAGAGCGGCCAGTGGTGCTGCATCGCGCCAGC
TCGACGAACACAGCGAATCCGTTCGGCTCCACCTTTTGCTATGGCTACCA
AGACCTGATTTTCGAGGTGATGCCCAATAGCCACATCGCCTCGGTAACGC
TCTACAATACTGCGCCTCCCAGGCAGCCAGCGCATTCCTGGCAGCAGCAC
AAAATGCAAGACATTCGCCTCACAGTGGCCGCAAGCTTTCTAGACCAT

BO24978.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7083-RA 1317 CG7083-PA 1..1314 17..1330 6570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7083-RA 2029 CG7083-RA 306..1619 17..1330 6570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8341153..8342466 17..1330 6570 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:47:04 has no hits.

BO24978.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-03 13:59:29 Download gff for BO24978.complete
Subject Subject Range Query Range Percent Splice Strand
CG7083-RA 269..1582 17..1332 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:59 Download gff for BO24978.complete
Subject Subject Range Query Range Percent Splice Strand
CG7083-RA 306..1619 17..1332 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:57:15 Download gff for BO24978.complete
Subject Subject Range Query Range Percent Splice Strand
CG7083-RA 306..1619 17..1332 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:57:15 Download gff for BO24978.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8341153..8342466 17..1332 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:59 Download gff for BO24978.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8334253..8335566 17..1332 99   Plus

BO24978.pep Sequence

Translation from 16 to 1348

> BO24978.pep
MLDLEIVPEISLGCDAWEFVLGMHFSQAIAIIQSQVGIIKGVQVLYSDTT
PLGVDIIINLPQDGVRLIFDPVSQRLKTIEVFNMKLVKLRYFGVYFNSPE
VLPSIEQIEHSFGATHPGVYDAAKQLFALHFRGLSFYFPVDSKLHSGYAH
GLSSLVFLNGASPVVSKMSLYAGSNVLENRVPSLPLSCYHRQMYLESATV
LRTAFGHTKGLKLKLFTEGSGRALEPRRQCFTRELLFGDSCEDVATSLGA
PNRIFFKSEDKMKIHSSSVNRQAQSKRSDIFFNYFTLGIDVLFDARTQTC
KKFILHTNYPGHFNFNMYHRCEFQFLLQADHPSMSDSGHDLVTPTKQEHV
NITAYTKWDAISSALATSERPVVLHRASSTNTANPFGSTFCYGYQDLIFE
VMPNSHIASVTLYNTAPPRQPAHSWQQHKMQDIRLTVAASFLDH

BO24978.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7083-PA 438 CG7083-PA 1..438 1..438 2295 100 Plus