BO24983.complete Sequence
829 bp assembled on 2010-06-03
GenBank Submission: KX795412
> BO24983.complete
GAAGTTATCAGTCGACATGAAACTGTTCGTATTCCTGGCCTTGGCCGTGG
CCGCAGCTACTGCTGTGCCCGCTCCCGCCCAGAAGCTGACCCCGACGCCC
ATCAAGGACATTCAGGGTCGCATCACCAACGGCTACCCAGCCTACGAGGG
CAAGGTGCCCTACATCGTGGGTCTGCTCTTCAGCGGCAACGGAAACTGGT
GGTGCGGTGGCTCGATCATCGGCAACACCTGGGTCCTGACCGCCGCCCAC
TGCACCAACGGAGCCAGTGGAGTGACCATCAACTACGGAGCCAGCATCCG
CACCCAGCCCCAGTACACCCACTGGGTGGGCAGTGGCGACATCATCCAGC
ACCACCACTACAACAGCGGCAACCTGCACAACGACATCTCCCTGATCCGT
ACCCCGCACGTCGACTTCTGGAGCCTGGTCAACAAGGTTGAGCTGCCCAG
CTACAACGACCGCTACCAGGACTACGCCGGATGGTGGGCCGTGGCCTCCG
GATGGGGCGGCACCTACGATGGCAGCCCACTGCCCGACTGGCTCCAGTCC
GTCGATGTCCAGATCATTTCCCAAAGTGATTGCAGCCGCACCTGGTCTCT
CCACGACAACATGATCTGCATCAACACTGACGGAGGCAAGTCCACCTGCG
GAGGCGACTCTGGTGGCCCCCTGGTTACACACGACGGCAACCGCCTGGTC
GGAGTGACCTCCTTCGGATCCGCCGCTGGCTGCCAGTCTGGTGCTCCCGC
CGTCTTCAGCCGCGTCACCGGATACCTGGACTGGATCCGCGACAACACCG
GCATCTCCTACGCAAGCTTTCTAGACCAT
BO24983.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:47:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon99Cii-RA | 798 | CG31034-PA | 1..795 | 17..811 | 3975 | 100 | Plus |
| Jon99Ciii-RB | 798 | CG31362-PB | 1..795 | 17..811 | 3930 | 99.6 | Plus |
| Jon99Ciii-RA | 798 | CG31362-PA | 1..795 | 17..811 | 3930 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:47:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon99Cii-RA | 862 | CG31034-RA | 29..823 | 17..811 | 3975 | 100 | Plus |
| Jon99Ciii-RB | 1240 | CG31362-RB | 27..821 | 17..811 | 3930 | 99.6 | Plus |
| Jon99Ciii-RA | 837 | CG31362-RA | 27..821 | 17..811 | 3930 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:47:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29923793..29924587 | 811..17 | 3975 | 100 | Minus |
| 3R | 32079331 | 3R | 29922242..29923036 | 17..811 | 3930 | 99.6 | Plus |
| 3R | 32079331 | 3R | 30488988..30489788 | 17..811 | 2860 | 90.8 | Plus |
| 3R | 32079331 | 3R | 30487103..30487903 | 811..17 | 2800 | 90.3 | Minus |
| 2L | 23513712 | 2L | 4952599..4952996 | 508..114 | 695 | 78.9 | Minus |
| 2R | 25286936 | 2R | 8691581..8691968 | 114..507 | 670 | 79.2 | Plus |
| 2L | 23513712 | 2L | 4949975..4950403 | 811..386 | 640 | 77.2 | Minus |
| 2L | 23513712 | 2L | 4954674..4955009 | 466..128 | 625 | 79.6 | Minus |
| 3L | 28110227 | 3L | 8392871..8393288 | 804..390 | 495 | 75.1 | Minus |
| 3L | 28110227 | 3L | 8391897..8392081 | 383..567 | 460 | 83.2 | Plus |
| 3L | 28110227 | 3L | 6052735..6052876 | 367..508 | 305 | 81 | Plus |
| 3L | 28110227 | 3L | 8393403..8393570 | 254..81 | 280 | 78.7 | Minus |
| 3L | 28110227 | 3L | 6053924..6054062 | 521..383 | 275 | 79.9 | Minus |
| 2R | 25286936 | 2R | 8692074..8692274 | 604..804 | 255 | 75.1 | Plus |
| 3L | 28110227 | 3L | 6053635..6053799 | 807..643 | 255 | 77 | Minus |
| 3L | 28110227 | 3L | 8391658..8391881 | 114..346 | 255 | 76 | Plus |
| 3R | 32079331 | 3R | 29925917..29926066 | 256..110 | 220 | 78 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:47:15 has no hits.
BO24983.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-03 13:59:30 Download gff for
BO24983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon99Cii-RA | 25..819 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:02 Download gff for
BO24983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon99Cii-RA | 29..823 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:57:20 Download gff for
BO24983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon99Cii-RA | 29..823 | 17..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:57:20 Download gff for
BO24983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29923791..29924587 | 17..813 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:02 Download gff for
BO24983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25749513..25750309 | 17..813 | 99 | | Minus |
BO24983.pep Sequence
Translation from 16 to 829
> BO24983.pep
MKLFVFLALAVAAATAVPAPAQKLTPTPIKDIQGRITNGYPAYEGKVPYI
VGLLFSGNGNWWCGGSIIGNTWVLTAAHCTNGASGVTINYGASIRTQPQY
THWVGSGDIIQHHHYNSGNLHNDISLIRTPHVDFWSLVNKVELPSYNDRY
QDYAGWWAVASGWGGTYDGSPLPDWLQSVDVQIISQSDCSRTWSLHDNMI
CINTDGGKSTCGGDSGGPLVTHDGNRLVGVTSFGSAAGCQSGAPAVFSRV
TGYLDWIRDNTGISYASFLDH
BO24983.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:41:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon99Ciii-PB | 265 | CG31362-PB | 1..265 | 1..265 | 1465 | 100 | Plus |
| Jon99Ciii-PA | 265 | CG31362-PA | 1..265 | 1..265 | 1465 | 100 | Plus |
| Jon99Cii-PA | 265 | CG31034-PA | 1..265 | 1..265 | 1465 | 100 | Plus |
| Jon99Fii-PA | 267 | CG2229-PA | 1..267 | 1..265 | 1383 | 92.5 | Plus |
| Jon99Fi-PA | 267 | CG18030-PA | 1..267 | 1..265 | 1381 | 92.5 | Plus |
