BO24984.complete Sequence
1333 bp assembled on 2010-06-03
GenBank Submission: KX796174
> BO24984.complete
GAAGTTATCAGTCGACATGTTGTTTTTCTGCCTAGCCTTGATCATCGGCT
GCGCAGTCGGAGAATACAGCGAAGTCCGGGTCATCCAGGAAGAGGACAAC
TTCCTGGAGAGTCCTCACTACCTAAAAAACGAGGAAATAGGAGATCTTTT
CAGCCAGCTAGCCAAGGATTACCCCGACTTGGCGCAGACCTATACAATAG
GCAAATCCCTGGAGGATCGACCCATCTACGCCCTAGCCTTAAGTGCACCT
ACCGGGGAGTCCAAGAATGGAGATCTCCTAAGGCCAATGGTTAAACTGGT
GGCCAACATACAAGGCGATGAAGCCGTGGGTCGTCAGATGGTTCTCTATA
TGGCCGAATACCTGGCCACCCACTACGATGGGGACCCGAAGGTCCAGGCG
CTACTAAATCTCACCGAAATCCACTTCCTGCCCACCTGTAACCCCGATGG
ATTCGCCAAAGCCAAGGAAGGCAACTGCGAGTCGCTGCCCAACTATGTGG
GTCGTGGCAATGCGGCCAACATCGATTTGAATCGCGATTTCCCCGATCGC
CTGGAGCAGAGCCATGTCCACCAGTTGCGCGCCCAGTCTCGTCAGCCGGA
AACAGCAGCCCTGGTAAATTGGATCGTTAGCAAACCGTTTGTGCTCTCCG
CCAATTTCCATGGCGGAGCTGTTGTGGCCAGCTATCCCTATGACAACTCC
TTGGCTCACAATGAGTGCTGCGAGGAGAGTTTGACTCCGGATGATCGGGT
CTTCAAGCAGCTGGCCCACACCTATTCTGACAACCATCCGATTATGAGAA
AGGGCAACAATTGCAACGATAGCTTCTCGGGAGGTATCACCAACGGAGCC
CACTGGTATGAGTTGTCCGGTGGAATGCAGGACTTTAACTATGCGTTTAG
CAACTGTTTCGAGCTGACCATCGAGTTGTCGTGCTGCAAGTATCCGGCAG
CAAGCACTTTGCCCCAGGAATGGCAGCGGAACAAGGCATCCCTGCTGCAG
CTGCTGCGCCAGGCACATATCGGCATCAAGGGCCTGGTGACCGATGCCAG
TGGCTTTCCAATAGCCGATGCCAATGTCTACGTGGCTGGACTAGAGGAGA
AACCCATGCGCACTTCCAAACGTGGCGAATACTGGAGGCTTTTGACCCCG
GGACTCTATAGCGTGCACGCCTCCGCTTTTGGTTACCAGACCAGTGCCCC
GCAACAGGTCCGGGTGACCAACGATAACCAGGAGGCCTTGCGCCTGGACT
TTAAGCTTGCGCCCGTCGAGACGAACTTTGATGGTATTAGCAGTTTTTAC
AGTCCCTATTATTTCGCAAGCTTTCTAGACCAT
BO24984.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:47:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| svr-RJ | 1302 | CG4122-PJ | 1..1299 | 17..1315 | 6495 | 100 | Plus |
| svr-RE | 1302 | CG4122-PE | 1..1299 | 17..1315 | 6495 | 100 | Plus |
| svr-RH | 4314 | CG4122-PH | 1..1268 | 17..1284 | 6340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:47:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| svr-RJ | 3092 | CG4122-RJ | 443..1741 | 17..1315 | 6495 | 100 | Plus |
| svr-RE | 3144 | CG4122-RE | 495..1793 | 17..1315 | 6495 | 100 | Plus |
| svr-RH | 5842 | CG4122-RH | 495..1762 | 17..1284 | 6340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:47:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 502287..502766 | 703..1182 | 2400 | 100 | Plus |
| X | 23542271 | X | 496940..497390 | 17..467 | 2255 | 100 | Plus |
| X | 23542271 | X | 501983..502221 | 465..703 | 1195 | 100 | Plus |
| X | 23542271 | X | 502835..502968 | 1182..1315 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:47:53 has no hits.
BO24984.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-03 13:59:31 Download gff for
BO24984.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| svr-RE | 483..1768 | 30..1317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:04 Download gff for
BO24984.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| svr-RE | 508..1793 | 30..1317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:57:34 Download gff for
BO24984.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| svr-RE | 508..1793 | 30..1317 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:57:34 Download gff for
BO24984.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 496953..497389 | 30..466 | 100 | -> | Plus |
| X | 501985..502220 | 467..702 | 100 | -> | Plus |
| X | 502287..502766 | 703..1182 | 100 | -> | Plus |
| X | 502836..502968 | 1183..1317 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:04 Download gff for
BO24984.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 396869..397001 | 1183..1317 | 98 | | Plus |
| arm_X | 390986..391422 | 30..466 | 100 | -> | Plus |
| arm_X | 396018..396253 | 467..702 | 100 | -> | Plus |
| arm_X | 396320..396799 | 703..1182 | 100 | -> | Plus |
BO24984.pep Sequence
Translation from 16 to 1333
> BO24984.pep
MLFFCLALIIGCAVGEYSEVRVIQEEDNFLESPHYLKNEEIGDLFSQLAK
DYPDLAQTYTIGKSLEDRPIYALALSAPTGESKNGDLLRPMVKLVANIQG
DEAVGRQMVLYMAEYLATHYDGDPKVQALLNLTEIHFLPTCNPDGFAKAK
EGNCESLPNYVGRGNAANIDLNRDFPDRLEQSHVHQLRAQSRQPETAALV
NWIVSKPFVLSANFHGGAVVASYPYDNSLAHNECCEESLTPDDRVFKQLA
HTYSDNHPIMRKGNNCNDSFSGGITNGAHWYELSGGMQDFNYAFSNCFEL
TIELSCCKYPAASTLPQEWQRNKASLLQLLRQAHIGIKGLVTDASGFPIA
DANVYVAGLEEKPMRTSKRGEYWRLLTPGLYSVHASAFGYQTSAPQQVRV
TNDNQEALRLDFKLAPVETNFDGISSFYSPYYFASFLDH
BO24984.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:41:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| svr-PJ | 433 | CG4122-PJ | 1..433 | 1..433 | 2301 | 100 | Plus |
| svr-PE | 433 | CG4122-PE | 1..433 | 1..433 | 2301 | 100 | Plus |
| svr-PH | 1437 | CG4122-PH | 1..423 | 1..423 | 2245 | 100 | Plus |
| svr-PD | 1404 | CG4122-PD | 1..423 | 1..423 | 2245 | 100 | Plus |
| svr-PL | 435 | CG4122-PL | 28..435 | 23..433 | 1808 | 82.2 | Plus |
| svr-PH | 1437 | CG4122-PH | 453..839 | 25..416 | 656 | 36.6 | Plus |
| svr-PD | 1404 | CG4122-PD | 453..839 | 25..416 | 656 | 36.6 | Plus |
