BO24993.complete Sequence
1078 bp assembled on 2010-06-03
GenBank Submission: KX799033
> BO24993.complete
GAAGTTATCAGTCGACATGTATGCAGACGAAATGGCAATCGCTAGCAACG
TTGTCGAAGCGGGGAACGCGGTTCGCGCGGAAAAAGGCAGAAAATATTTT
TATTTTCGAAAGATGATAGGAGATTATATTGACACCTCTATTCGCATTGT
AGCCACCGTGTTCTTGGCTGATCTGCTCCTTCGCTTGTACCGCTGTGTCG
TCGAATATGGGAGCAATGGGCGGTACTATTTGCCCGAGGATCGGCTGTGG
ATAATCCTGCGGCGCTCGTGCACGTATAACAACAGATCGATATACCTGAT
TGTGGGATTCCTTCTCGTAGCTTTTTTTCGAATTTCGGTTACCGGGAATT
ACAGGAACGTAATGCCCACGACGCTGTTTCTGTTCCAAATGCCGCTCTAC
TGGATATGGAGCTTTACCGATATGGACCAAAGCACCCTGAGCTACTCGCA
CTGGATACGTGACTCCCATGGACTAGACTATGCGGCCGGAATGGCCTCCA
ACTACTTTCACGGCTACCTCAAACTTTCACTGCCCGAACGCAAGGATGAT
GGGCTCAAACATCGATTAGCAATGTACGAGGACAAGAATAATGTTACCTT
CGGCATTAAACGACTGGTTATCCTCATTCCCGATGAGATGTTTGTCAACG
GCGTACTAGAAAGCCACTTACTTGACAAAGCTGAGCCCCTGGAGACCCAG
TTCATCAACCGAGCCGGTGTCTATCGTCCTTTCAAGCACGATGTCTACAG
AATGAACAAAAAGGTCAATGGCAGGACCTATTACTTTGCCGTCGAGGGTG
CCACGCCCATGATATCCTTCTTCGATGCGACGTACTCTAACTTGTCGGGT
ACCTGGCAGATGCAGGAACTAAAGCGAGAGATCTGGATCAAGTTCTACAA
GCACCTGAAAGAACTTATTACTACTTGGCCGGAGACTCGAGACCTTGTAG
AGCTCATCATCTATAACTCCCATGATAGCAAGGGCAACCTGGTGGATGTT
GGCGAATTGCTTGTAGCTCATATGCAAAACAAAACCAAAACTATTGACGA
AATTTCCAACGCAAGCTTTCTAGACCAT
BO24993.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:50:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1667-RC | 1032 | CG1667-PC | 1..1029 | 32..1060 | 5145 | 100 | Plus |
| CG1667-RB | 1032 | CG1667-PB | 1..1029 | 32..1060 | 5145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1667-RC | 1576 | CG1667-RC | 208..1251 | 17..1060 | 5220 | 100 | Plus |
| CG1667-RB | 1361 | CG1667-RB | 1..1036 | 25..1060 | 5180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9843959..9844409 | 131..581 | 2255 | 100 | Plus |
| 2R | 25286936 | 2R | 9844620..9844904 | 684..968 | 1425 | 100 | Plus |
| 2R | 25286936 | 2R | 9843789..9843903 | 17..131 | 575 | 100 | Plus |
| 2R | 25286936 | 2R | 9844459..9844565 | 579..685 | 535 | 100 | Plus |
| 2R | 25286936 | 2R | 9844990..9845081 | 969..1060 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:50:04 has no hits.
BO24993.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-03 13:59:37 Download gff for
BO24993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1667-RA | 196..1239 | 17..1062 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:35:40 Download gff for
BO24993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1667-RA | 208..1251 | 17..1062 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:01 Download gff for
BO24993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1667-RC | 208..1251 | 17..1062 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:01 Download gff for
BO24993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9843789..9843903 | 17..131 | 100 | -> | Plus |
| 2R | 9843960..9844408 | 132..580 | 100 | -> | Plus |
| 2R | 9844461..9844565 | 581..685 | 100 | -> | Plus |
| 2R | 9844622..9844904 | 686..968 | 100 | -> | Plus |
| 2R | 9844990..9845081 | 969..1062 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:35:40 Download gff for
BO24993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5731966..5732070 | 581..685 | 100 | -> | Plus |
| arm_2R | 5731294..5731408 | 17..131 | 100 | -> | Plus |
| arm_2R | 5731465..5731913 | 132..580 | 100 | -> | Plus |
| arm_2R | 5732127..5732409 | 686..968 | 100 | -> | Plus |
| arm_2R | 5732495..5732586 | 969..1062 | 97 | | Plus |
BO24993.pep Sequence
Translation from 16 to 1078
> BO24993.pep
MYADEMAIASNVVEAGNAVRAEKGRKYFYFRKMIGDYIDTSIRIVATVFL
ADLLLRLYRCVVEYGSNGRYYLPEDRLWIILRRSCTYNNRSIYLIVGFLL
VAFFRISVTGNYRNVMPTTLFLFQMPLYWIWSFTDMDQSTLSYSHWIRDS
HGLDYAAGMASNYFHGYLKLSLPERKDDGLKHRLAMYEDKNNVTFGIKRL
VILIPDEMFVNGVLESHLLDKAEPLETQFINRAGVYRPFKHDVYRMNKKV
NGRTYYFAVEGATPMISFFDATYSNLSGTWQMQELKREIWIKFYKHLKEL
ITTWPETRDLVELIIYNSHDSKGNLVDVGELLVAHMQNKTKTIDEISNAS
FLDH
BO24993.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:40:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1667-PC | 343 | CG1667-PC | 1..343 | 6..348 | 1810 | 100 | Plus |
| CG1667-PB | 343 | CG1667-PB | 1..343 | 6..348 | 1810 | 100 | Plus |
