BO24994.complete Sequence
3973 bp assembled on 2012-04-24
GenBank Submission: KX793872
> BO24994.complete
GAAGTTATCAGTCGACATGACCGTTAAGAACGGCGATGTCGTCAAGGACG
ATGTGAATTCGCGATCGCAGTACAAAACGAACATCGTCCTGGGCGCCAAA
CTAGAGGATTCGGATCGAGATCGAAAGAGCTTTGAGCCCAACAAGTCGAA
AAAGAAGTCCAAGCATGACGAGTCGGATGCCAGCGATGAGGAGGATGGCT
CCCAGTACCATGAGGATGTCAAGCAGGTTAGCTACTTCCAGCTCTTTCGG
TACGCCACCAAAAAGGATCGAGCGCTCTATGTGATCGGACTACTGTCTGC
CGTGGCCACAGGCCTGACCACTCCGGCCAACAGTTTGATATTCGGTAATC
TCGCCAATGACATGATTGACTTGGGTGGACTGCTTGAGAGCGGAAAATCA
TATCGAGCTGACGATGCTATTTCTACTTTGCTTCTGGACAAAGTGCGGCA
GTTCTCCCTGCAAAACACCTACATCGGCATCATTATGCTGGTGTGTTCCT
ATCTCTCGATCACCTGCTTCAACTACGCGGCCCACTCCCAGATCCTCACC
ATCCGCTCAAAGTTCTTTCGCTCCATTCTGCATCAGGACATGAAGTGGTA
CGACTTCAACCAGAGTGGCGAAGTAGCCAGCCGAATGAATGAAGATCTCT
CCAAAATGGAGGATGGCTTGGCCGAAAAAGTGGTCATGTTCGTCCATTAC
CTTGTCGCCTTCGTGGGATCTTTGGTGCTAGCCTTTGTCAAGGGCTGGCA
GCTATCCCTGGTGTGCTTGACCAGTTTGCCACTAACATTCATCGCCATGG
GCCTGGTGGCCGTGGCCACGTCCCGCCTGGCGAAAAAGGAGGTGACCATG
TATGCTGGTGCTGCCGTGGTGGCTGAAGGCGCTCTCTCCGGAATTCGAAC
GGTAAAGGCTTTTGAGGGCGAGGCGAAGGAGGTGGCTGCGTACAAGGAGC
GTGTGGTTGCTGCCAAGATCTTGAATATCAAGAGAAATATGTTCTCCGGA
ATCGGATTCGGTCTGCTTTGGTTCTTCATCTACGCATCCTATGCTCTGGC
CTTCTGGTATGGAGTGGGTCTGGTAATCAAGGGATACCACGAACCCGCGT
ATGAGAACTACGATGCTGGCACCATGATCACCGTATTCTTTTCCGTGATG
ATGGGTTCCATGAATATTGGAATGGCGGCTCCCTATATCGAGGCATTTGG
CATCGCGAAGGGCGCCTGCGCCAAGGTTTTCCACATTATCGAGCAGATTC
CGGAAATTAATCCCATTGATGGGGAGGGTAAAAAGTTAAATGAGCCCCTT
ACCACCATTGAGTTTAAGGAAGTGGAGTTCCAGTATCCCACGCGACCGGA
GGTTTCTATTCTGAACAAACTGAACCTGAAAATCCATCGTGGCCAGACGG
TGGCTCTTGTTGGTCCATCCGGCTGTGGCAAATCAACCTGCATCCAACTG
GTCCAGCGATTCTATGACCCCCAGGCTGGTAATCTTTTGTTCAATGGCAC
CAATCTTAAGGACCTCGACATCAACTGGCTACGCTCTAGGATTGGAGTGG
TGGGTCAGGAACCAATCCTCTTCGCCACTTCCATATACGAGAATATCAGG
TACGGTCGAGAGGACGCCACTCGCGAGGAGATCGAGGCAGCAGCTGCCGC
AGCCAATGCAGCCATCTTTATTAAGAAGCTACCCAAAGGATATGATACTT
TGGTGGGAGAGCGAGGAGCTCAGTTGTCCGGAGGGCAGAAGCAGAGGATA
GCCATTGCTCGCGCATTGATTCGTGATCCCGAAATCTTGCTGTTGGATGA
AGCCACATCTGCATTGGATACCGCCAGTGAGGCTAAAGTACAAGCTGCCC
TGGAGAAAGTCAGCGCTGGAAGGACGACCATCATCGTGGCCCACCGTTTG
TCCACCGTTCGTCGGGCAGACAGGATTGTGGTGATCAACAAGGGTGAGGT
GGTGGAGAGTGGAACGCATCAAGAGTTGATGGAGTTGAAGGATCACTACT
TTAATCTTGTAACCACTCAACTGGGTGAGGATGATGGCTCGGTCCTTAGT
CCCACTGGTGATATCTACAAGAACTTTGACATCAAGGATGAAGATGAGGA
AGAGATCAAAGTACTTAGCGAGGACGAGGACGAAGATGTGATGGTCACTG
ACGAGAAAAATAAGAAAAAGAAAAAGAAGAAGGTCAAGGACCCCAACGAG
GTGAAACCCATGTTGGAGGTGATGAAAATGAACAAACCGGAATGGCTTCA
GATCGCAGTGGGTTGCATCTCCTCCGTGATCATGGGCTGCGCCATGCCCA
TCTTTGCCGTGCTCTTTGGTAGCATCCTTCAGATTCTTTCGGTTAAGGAT
AATGATCAATACGTTCGCGAAAACTCCAACCAGTACAGCTTGTACTTCTT
GATTGCCGGTATCGTAGTGGGCATTGCCACGTTCCTACAGATATACTTCT
TTGGTATCGCCGGTGAGAGACTGACGGAACGCCTTCGAGGACTCATGTTC
GAGGCCATGCTGCGCCAGGAGGTGGCCTGGTTCGATGACAAGGCGAACGG
TACCGGAAGCCTTTGTGCCCGACTCTCCGGAGATGCTGCTGCAGTTCAGG
GTGCCACTGGTCAACGAATTGGAACGATCGTTCAATCGATCTCCACTCTG
GCATTGGGCATTGCCTTGTCCATGTATTACGAGTGGAGTCTGGGATTGGT
GGCCCTTGCCTTTACGCCCTTCATCCTGATCGCCTTCTACATGCAGCGTA
CTCTAATGGCAAAAGAGAACATGGGCTCCGCCAAGACCATGGAGAACTGC
ACCAAGCTGGCCGTCGAAGTGGTTTCCAATATTCGTACTGTAGCTTCTCT
GGGTCGTGAGGAAATGTTCCACCAGAACTACATTGGCATGCTGATTCCAG
CTGTTGAGATTTCCAAGAGAAATACCCACTTCCGAGGATTGGTCTACGGT
CTCGCCCGTTCCCTGATGTTCTTTGCCTATGCTGCTTGCATGTATTATGG
AACATGGTGTGTGATTCACCGCGGAATTTTGTTTGGAGATGTATTCAAAG
TATCCCAAGCCCTGATCATGGGTACGGCTTCCATTGCCAATGCATTGGCC
TTTGCTCCCAATATGCAGAAGGGAGTTTCGGCAGCCAAGACCATCTTTAC
GTTCCTCCGCCGCCAGCCGTCGATTGTGGACCGACCGGGAGTGTCTCGTG
ATCCTTGGCATAGCGAGGGATATGTTCGCTTCGACAAGGTGAAGTTCAGC
TATCCCACACGCAGTGAGATTCAGGTACTCAAGGGTCTGGAGCTTGCTGT
GAGCAAGGGTCAGAAGATCGCCCTAGTGGGTCCATCGGGCTGTGGCAAGT
CCACGTGCATCCAGCTGATACAGCGATTCTACGATGTAGATGAGGGAGCT
ACCCTTATAGATGAGTGTGATGTGCGCAATGTTTCTATGACCAATCTGCG
CAACCAGTTGGGTATCGTGTCGCAGGAGCCCATTCTTTTCGATCGCACAA
TCCGAGAGAATATTTCCTACGGTGACAATGCCAGGAATGTGACTGATCAG
GAGATCATCTCGGCGTGCAAAAAGTCCAATATCCACGAATTCATCGCTAA
CCTGCCCTTGGGTTATGATACGAGAATGGGCGAGAAGGGTGCTCAGTTGT
CCGGAGGTCAGAAGCAGCGCATAGCTATTGCACGAGCCCTCATCCGGAAT
CCGAAAATCATGCTGCTTGACGAGGCCACTTCTGCCTTGGACGCTGAAAG
TGAAAAGGTTGTCCAAGATGCACTCGATGCCGCCTCTGAAGGACGTACCA
CGATCAGTATAGCCCACCGACTTTCCACCGTTGTCCACTCCGACGTAATA
TTCGTCTTCGAGAACGGATTAGTGTGTGAAGCTGGAGACCACAAGCAACT
GCTTGCGAATCGGGGTCTCTACTACACGCTGTACAAACTTCAGAGCGGAG
CCATGGCAAGCTTTCTAGACCAT
BO24994.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:36:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mdr50-RA | 3942 | CG8523-PA | 1..3939 | 17..3955 | 19695 | 100 | Plus |
| Mdr65-RA | 3909 | CG10181-PA | 1636..1718 | 3653..3735 | 220 | 84.3 | Plus |
| CG10226-RB | 3621 | CG10226-PB | 994..1059 | 3320..3385 | 195 | 86.4 | Plus |
| Mdr50-RA | 3942 | CG8523-PA | 3625..3725 | 1718..1818 | 190 | 79.2 | Plus |
| Mdr50-RA | 3942 | CG8523-PA | 1702..1802 | 3641..3741 | 190 | 79.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:36:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mdr50-RA | 4256 | CG8523-RA | 105..4043 | 17..3955 | 19695 | 100 | Plus |
| Mdr65-RA | 4135 | CG10181-RA | 1771..1853 | 3653..3735 | 220 | 84.3 | Plus |
| CG10226-RB | 3921 | CG10226-RB | 1116..1181 | 3320..3385 | 195 | 86.4 | Plus |
| Mdr50-RA | 4256 | CG8523-RA | 1806..1906 | 3641..3741 | 190 | 79.2 | Plus |
| Mdr50-RA | 4256 | CG8523-RA | 3729..3829 | 1718..1818 | 190 | 79.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:36:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14248756..14250716 | 643..2603 | 9805 | 100 | Plus |
| 2R | 25286936 | 2R | 14251354..14251916 | 3049..3611 | 2815 | 100 | Plus |
| 2R | 25286936 | 2R | 14250775..14251080 | 2603..2908 | 1530 | 100 | Plus |
| 2R | 25286936 | 2R | 14248295..14248578 | 359..642 | 1420 | 100 | Plus |
| 2R | 25286936 | 2R | 14248000..14248226 | 133..359 | 1135 | 100 | Plus |
| 2R | 25286936 | 2R | 14252185..14252384 | 3756..3955 | 1000 | 100 | Plus |
| 2R | 25286936 | 2R | 14251977..14252128 | 3610..3761 | 760 | 100 | Plus |
| 2R | 25286936 | 2R | 14251143..14251284 | 2907..3048 | 710 | 100 | Plus |
| 2R | 25286936 | 2R | 14247070..14247185 | 17..132 | 580 | 100 | Plus |
| 3L | 28110227 | 3L | 6243016..6243098 | 3735..3653 | 220 | 84.3 | Minus |
| 3L | 28110227 | 3L | 6237360..6237425 | 3385..3320 | 195 | 86.4 | Minus |
| 2R | 25286936 | 2R | 14249831..14249931 | 3641..3741 | 190 | 79.2 | Plus |
| 2R | 25286936 | 2R | 14252008..14252108 | 1718..1818 | 190 | 79.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:36:56 has no hits.
BO24994.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-06 11:41:26 Download gff for
BO24994.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mdr50-RA | 105..4043 | 17..3957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 11:27:39 Download gff for
BO24994.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mdr50-RA | 105..4043 | 17..3957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:13 Download gff for
BO24994.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mdr50-RA | 105..4043 | 17..3957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:53:30 Download gff for
BO24994.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mdr50-RA | 105..4043 | 17..3957 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:53:30 Download gff for
BO24994.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14251145..14251284 | 2909..3048 | 100 | -> | Plus |
| 2R | 14250775..14251080 | 2603..2908 | 100 | -> | Plus |
| 2R | 14247070..14247185 | 17..132 | 100 | -> | Plus |
| 2R | 14248000..14248225 | 133..358 | 100 | -> | Plus |
| 2R | 14248295..14248578 | 359..642 | 100 | -> | Plus |
| 2R | 14248756..14250715 | 643..2602 | 100 | -> | Plus |
| 2R | 14251354..14251915 | 3049..3610 | 100 | -> | Plus |
| 2R | 14251978..14252124 | 3611..3757 | 100 | -> | Plus |
| 2R | 14252187..14252384 | 3758..3957 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:13 Download gff for
BO24994.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10135505..10135730 | 133..358 | 100 | -> | Plus |
| arm_2R | 10135800..10136083 | 359..642 | 100 | -> | Plus |
| arm_2R | 10134575..10134690 | 17..132 | 100 | -> | Plus |
| arm_2R | 10138280..10138585 | 2603..2908 | 100 | -> | Plus |
| arm_2R | 10138650..10138789 | 2909..3048 | 100 | -> | Plus |
| arm_2R | 10136261..10138220 | 643..2602 | 100 | -> | Plus |
| arm_2R | 10138859..10139420 | 3049..3610 | 100 | -> | Plus |
| arm_2R | 10139483..10139629 | 3611..3757 | 100 | -> | Plus |
| arm_2R | 10139692..10139889 | 3758..3957 | 99 | | Plus |
BO24994.pep Sequence
Translation from 16 to 3973
> BO24994.pep
MTVKNGDVVKDDVNSRSQYKTNIVLGAKLEDSDRDRKSFEPNKSKKKSKH
DESDASDEEDGSQYHEDVKQVSYFQLFRYATKKDRALYVIGLLSAVATGL
TTPANSLIFGNLANDMIDLGGLLESGKSYRADDAISTLLLDKVRQFSLQN
TYIGIIMLVCSYLSITCFNYAAHSQILTIRSKFFRSILHQDMKWYDFNQS
GEVASRMNEDLSKMEDGLAEKVVMFVHYLVAFVGSLVLAFVKGWQLSLVC
LTSLPLTFIAMGLVAVATSRLAKKEVTMYAGAAVVAEGALSGIRTVKAFE
GEAKEVAAYKERVVAAKILNIKRNMFSGIGFGLLWFFIYASYALAFWYGV
GLVIKGYHEPAYENYDAGTMITVFFSVMMGSMNIGMAAPYIEAFGIAKGA
CAKVFHIIEQIPEINPIDGEGKKLNEPLTTIEFKEVEFQYPTRPEVSILN
KLNLKIHRGQTVALVGPSGCGKSTCIQLVQRFYDPQAGNLLFNGTNLKDL
DINWLRSRIGVVGQEPILFATSIYENIRYGREDATREEIEAAAAAANAAI
FIKKLPKGYDTLVGERGAQLSGGQKQRIAIARALIRDPEILLLDEATSAL
DTASEAKVQAALEKVSAGRTTIIVAHRLSTVRRADRIVVINKGEVVESGT
HQELMELKDHYFNLVTTQLGEDDGSVLSPTGDIYKNFDIKDEDEEEIKVL
SEDEDEDVMVTDEKNKKKKKKKVKDPNEVKPMLEVMKMNKPEWLQIAVGC
ISSVIMGCAMPIFAVLFGSILQILSVKDNDQYVRENSNQYSLYFLIAGIV
VGIATFLQIYFFGIAGERLTERLRGLMFEAMLRQEVAWFDDKANGTGSLC
ARLSGDAAAVQGATGQRIGTIVQSISTLALGIALSMYYEWSLGLVALAFT
PFILIAFYMQRTLMAKENMGSAKTMENCTKLAVEVVSNIRTVASLGREEM
FHQNYIGMLIPAVEISKRNTHFRGLVYGLARSLMFFAYAACMYYGTWCVI
HRGILFGDVFKVSQALIMGTASIANALAFAPNMQKGVSAAKTIFTFLRRQ
PSIVDRPGVSRDPWHSEGYVRFDKVKFSYPTRSEIQVLKGLELAVSKGQK
IALVGPSGCGKSTCIQLIQRFYDVDEGATLIDECDVRNVSMTNLRNQLGI
VSQEPILFDRTIRENISYGDNARNVTDQEIISACKKSNIHEFIANLPLGY
DTRMGEKGAQLSGGQKQRIAIARALIRNPKIMLLDEATSALDAESEKVVQ
DALDAASEGRTTISIAHRLSTVVHSDVIFVFENGLVCEAGDHKQLLANRG
LYYTLYKLQSGAMASFLDH
BO24994.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:06:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mdr50-PA | 1313 | CG8523-PA | 1..1313 | 1..1313 | 6652 | 100 | Plus |
| Mdr49-PA | 1302 | CG3879-PA | 4..1298 | 45..1309 | 2569 | 42.1 | Plus |
| Mdr65-PA | 1302 | CG10181-PA | 2..1299 | 49..1309 | 2434 | 40.9 | Plus |
| Mdr49-PB | 1101 | CG3879-PB | 1..1097 | 230..1309 | 2360 | 44.8 | Plus |
| CG10226-PA | 1320 | CG10226-PA | 13..1319 | 53..1312 | 2261 | 38.5 | Plus |
| Mdr49-PA | 1302 | CG3879-PA | 78..648 | 753..1318 | 928 | 36 | Plus |
| Mdr49-PB | 1101 | CG3879-PB | 469..1097 | 30..668 | 831 | 34.5 | Plus |
| Mdr49-PB | 1101 | CG3879-PB | 2..447 | 877..1318 | 818 | 39.3 | Plus |
