BO24996.complete Sequence
1261 bp assembled on 2010-06-24
GenBank Submission: KX800000
> BO24996.complete
GAAGTTATCAGTCGACATGTCTTTAATAGCCATTGAAAGGGTGTTATGTG
GCTGGCCCAAGATTTGCCGCAAACTTATTGTAACGTCGCGGTCGCTGACC
TCCGGCTTGCGGCGGGCACTGGTCAAGCAGCCCCGTAAAGGCGGAGATGT
TGGAAAACCCGGAATGGAGCTTGGGCGCTGTTCGTGCTTTGGACTCCGTG
TGAACCTCAGCAATGCATCCGTCGTATACGTTGGCCACCGACGCTACTCG
ACGTACGAGAAGACGTCTACGCAAATTTTAACGAAGCTCTTTCCACAAAC
CTCTGAGGAGTCCAACGACGAGGAAAGTCGTGAGCGGCGGAAACTTGAGG
AGGAGGAGGAGCAGAAGGAATTGGAGCGGGCATTTAGGCGGATGAAACTG
GGCTTTGGGCTTTTCGGCATAGGTAGCATGTTGTTCTCGTTTTGGGCTAT
ATATTTCTATGGAAGGCCGTCCTTGGATGAGCACGGAAATGAAGTAATCG
ACGAATTTAGTTGTCTGCCACAGATGCAGCAGCTTATGTGGCGGACATGG
AAGTCGGTGAACCGCTTTCAACGGTTTTTCAAAGAGCCGTCGAGAAAAAA
GCTGCTTCCTGATCCCCTTCAGCCCCCCTACGTGCAGCCGCCGTATACTT
TGGTACTTGAGATTAAGGATGTGCTGGTACATCCCGATTGGACCTACGAA
ACAGGATGGCGCTTCAAGAAGCGCCCTGGCGTTGACGTGTTTTTGAAAGA
ATGTGCCAAGTATTTTGAGATTGTTGTTTACACGGCGGAGCAAGGAGTTA
CTGTGTTCCCGCTGGTCGACGCGCTTGATCCGAACGGCTGTATTATGTAT
CGCCTGGTTCGCGACTCTACGCACTTTGATGGAGGGCACCACGTGAAGAA
CCTTGACAACCTCAACCGAGACCTAAAGCGAGTGGTTGTCGTGGACTGGG
ATAGAAATTCCACCAAGTTTCACCCTTCGAATTCATTCTCGATCCCGCGG
TGGTCTGGAAACGACAATGACACTACCCTCTTTGAACTCACGTCGTTTCT
TAGTGTTCTAGGAACGAGTGAGATCGACGATGTCCGAGAAGTGCTGCAAT
ACTACAATCAGTTTAGTGACTCGTTATCCCAGTTCAGAGAAAACCAGCGA
AAGCTGGGTGAGCTAATGCACGCCGAGGAGGTAGAAAAAACTAGCAAGTC
TAGGCCCGTTGTCAAGAACTGGACCCGTGGCTTCATAAATCATGCAAGCT
TTCTAGACCAT
BO24996.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:47:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ttm2-RA | 1230 | CG12313-PA | 1..1227 | 17..1243 | 6135 | 100 | Plus |
| ttm50-RB | 1287 | CG2713-PB | 643..1008 | 602..967 | 495 | 75.7 | Plus |
| ttm50-RA | 1287 | CG2713-PA | 643..1008 | 602..967 | 495 | 75.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:47:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ttm2-RA | 1513 | CG12313-RA | 184..1410 | 17..1243 | 6135 | 100 | Plus |
| ttm50-RB | 1868 | CG2713-RB | 785..1150 | 602..967 | 495 | 75.7 | Plus |
| ttm50-RA | 1728 | CG2713-RA | 785..1150 | 602..967 | 495 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:47:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 275338..276564 | 17..1243 | 6135 | 100 | Plus |
| X | 23542271 | X | 2730952..2731278 | 928..602 | 435 | 75.5 | Minus |
Blast to na_te.dros performed 2014-11-28 07:47:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\worf | 4174 | Dmir\worf WORF 4174bp Derived from AY144572. | 807..852 | 396..349 | 118 | 75 | Minus |
BO24996.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-24 14:15:42 Download gff for
BO24996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ttm2-RA | 175..1401 | 17..1245 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:03 Download gff for
BO24996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ttm2-RA | 184..1410 | 17..1245 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:04:01 Download gff for
BO24996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ttm2-RA | 184..1410 | 17..1245 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:04:01 Download gff for
BO24996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 275338..276564 | 17..1245 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:03 Download gff for
BO24996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 275338..276564 | 17..1245 | 99 | | Plus |
BO24996.pep Sequence
Translation from 16 to 1261
> BO24996.pep
MSLIAIERVLCGWPKICRKLIVTSRSLTSGLRRALVKQPRKGGDVGKPGM
ELGRCSCFGLRVNLSNASVVYVGHRRYSTYEKTSTQILTKLFPQTSEESN
DEESRERRKLEEEEEQKELERAFRRMKLGFGLFGIGSMLFSFWAIYFYGR
PSLDEHGNEVIDEFSCLPQMQQLMWRTWKSVNRFQRFFKEPSRKKLLPDP
LQPPYVQPPYTLVLEIKDVLVHPDWTYETGWRFKKRPGVDVFLKECAKYF
EIVVYTAEQGVTVFPLVDALDPNGCIMYRLVRDSTHFDGGHHVKNLDNLN
RDLKRVVVVDWDRNSTKFHPSNSFSIPRWSGNDNDTTLFELTSFLSVLGT
SEIDDVREVLQYYNQFSDSLSQFRENQRKLGELMHAEEVEKTSKSRPVVK
NWTRGFINHASFLDH
BO24996.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:43:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ttm2-PA | 409 | CG12313-PA | 1..409 | 1..409 | 2179 | 100 | Plus |
| ttm50-PB | 428 | CG2713-PB | 107..426 | 87..407 | 1119 | 63.4 | Plus |
| ttm50-PA | 428 | CG2713-PA | 107..426 | 87..407 | 1119 | 63.4 | Plus |
| ttm3-PA | 343 | CG6691-PA | 53..312 | 124..382 | 771 | 54.4 | Plus |
| CG5830-PA | 329 | CG5830-PA | 130..273 | 235..380 | 195 | 32.9 | Plus |
