BO25001.complete Sequence
2221 bp assembled on 2010-06-25
GenBank Submission: KX799199
> BO25001.complete
GAAGTTATCAGTCGACATGAGCACGGACGATCTGCTGGTGCGCCGCGAAA
GGAGTGAAGACTCCCAATCCTCGAGTGTCTCCATTCCGGTTACGCCCACC
ACCGGAGGTGCCGCGCCTGCGCCCAGCGCCCCCACGTCATCGCTGGACCG
CCTGCGGAACACCTTCCGGCGCACGGAGAGCATCTCCTCGCAGATCTTCA
GCCACATATCCACACAGTTCTCGAATGCGGCCGCAGCAGCCGCCTCTTCC
GAGGTAATCGATGGCACCACCACGTACCCGTATCCCGACGAGCCCGCACC
ACCTGTTGTACCTGTTGCGCCGGACACGGTGGCGAGCGCCAGTGCTTCAT
CCCCGTCGCCATCGAAACTGAAAGCAAAGCGACTGAAACGCGCCCGGGAC
ACGGCGGAAATTGAGCGCAGTAATCTGGTGAATATCTGCAAGCTGGTGGT
CAAGGAGCTGTTGGAGCAGTCGCTGCGTTATGGTCGCATGCTGGACTCGG
ATCACCTGCCGTTGCAGCATTTCTTCATCGTCATCGAGCATGTCCTGGGG
CATGGATTGCGCCCGAAGAAGGGTCTGCTGGGACCGAGGAAGGAATTGTG
GGATCTGCTGCAGAGCGTCGAGCATTACTGCCCGGAGGCGCAGGACATTA
CGGCGAGTGTAAGGGATCTGCCCACCGTTCGTACCCACATTGGCCGCGCT
CGAGCCTGGCTGAGGATCGCTTTGATGCAAAAGAAGCTATCGGATTACCT
GCAGGCACTCATCGAGCACCGGGAGGATTCACTCTTCGACTACTATGAGC
CACATGCTCTGATGATGAGCGATGAGATCGTTGTGATAATGGGCATTTTG
GTGGGCTTAAACGTGATCGATTGCAATCTGTGCGTCAAGGAGGAGGATCT
GGACTCACAGCAGGGCGTCATCGACTTCTCGTTGTACCTGCGTTCAAGCT
CGAGAAACGCCGATGCGGCTCCAGAAGACAGTGCTCCGCCTGCTCTGCTG
GATGCCACTGGGCAGGGCAACATGATTGCGGTGCTGGACCAGAAGAACTA
CATTGAGGAGCTCAACAGGCATCTAAACGCCACTGTGGGCAATCTGCAGG
CCAAAGTAGAGTCCTTAACGACCACAAATGCCCTGATGAAAGAGGATTTG
GCAATCGCTCGGAATAGCTTGTTGGCCTTGCAGGCCGAGAACCAGGCCAT
GCGACAGTCCACGTCGGCAGGGGACAACAATTCAACTGGTTCGGGTGGTT
CATCCGACAAGGACAAGGAGAAGGCGTCCGAAGAGCTGGTTGAGGAGCGT
CGCAAGAACAGCGAGCTGGAGAAGGAGCTCAAATTGCAGGTGTCCCTCAA
GGCGGAATCGGACATGGCCATGAAACTGCTGGAGAAGGATATTCACGAAA
AGCAGGACACGATAGTCTCACTGCGCCGCCAGCTGGACGATATCAAGCAG
ATCAACCTGGAGATGTACCGAAAGCTGCAGGACTGTAAGGCGTCGTTAAC
GCACAAAACGGAGCTGATGACCAAGTTGGAGGTCCAAAAGGAGGACATGG
CCAGCACCATCGATCAGCTGGAGAAGAAGTGGAGTCATGATAAGAGCAAC
CTGGGGGAGATTCTCAAGACCACGTCGCAAACACTGACCACCCAGGTGAC
CGCCAGTGAGGAGCGGGCTGCCCGGGCGGAGGCCGAGTCGAGGATCGAAC
GCGAGTGGCGGATATCGCTGCAGGAGAAGGAGCTGAAGCTAAAGGAGAAG
ATAGCCAATCTGCAGGGCTGCCTCAAGGAACTGTCGGAGGAGAAGGAGAG
GAATGGCAAGCTGAAGGCTGATCTGGACAAGGTGCGAACGCAATGGTCGG
AGGCACAAACGACACTGGAGGAGCTCGGCATCCAGCTGAGCGTGAGCAAA
CTAAAGGTGTCGGAGATGCAGGATCAGGAGCGTCGCCAGCGCCAGCTGCT
CTCCGGCTCCGCCCAATCGCTGCAAGCCATGCCCGAGGCGGTGGGTAGTC
CGGGGATCTGGGCACCGGACTCCATTGCCACCCACTGCACCGCCTGCGAG
CGGGAGTTCAATCTTACGCGACGGAAGCACCACTGCCGCAGCTGCGGCGA
GATTTTCTGCAAGGCCTGTTCGGAGCACACGCTGCCCCTCCTCAATGCCC
AGGGTCAGCCGGGGAAACCAGTGCGTGTGTGTGACAATTGCTATGCCGCC
AAAGCAAGCTTTCTAGACCAT
BO25001.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:45:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31064-RB | 2190 | CG31064-PB | 1..2187 | 17..2203 | 10935 | 100 | Plus |
| CG31064-RG | 2634 | CG31064-PG | 820..2631 | 392..2203 | 9060 | 100 | Plus |
| CG31064-RA | 2004 | CG31064-PA | 1..1470 | 17..1486 | 7335 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:45:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31064-RB | 2687 | CG31064-RB | 181..2372 | 12..2203 | 10945 | 100 | Plus |
| CG31064-RG | 3111 | CG31064-RG | 985..2796 | 392..2203 | 9060 | 100 | Plus |
| CG31064-RA | 2985 | CG31064-RA | 181..1655 | 12..1486 | 7345 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:45:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27229820..27230444 | 2203..1579 | 3125 | 100 | Minus |
| 3R | 32079331 | 3R | 27233248..27233682 | 826..392 | 2175 | 100 | Minus |
| 3R | 32079331 | 3R | 27232472..27232875 | 1481..1078 | 2020 | 100 | Minus |
| 3R | 32079331 | 3R | 27238525..27238905 | 392..12 | 1890 | 99.7 | Minus |
| 3R | 32079331 | 3R | 27232935..27233187 | 1077..825 | 1265 | 100 | Minus |
| 3R | 32079331 | 3R | 27230566..27230669 | 1580..1477 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:45:40 has no hits.
BO25001.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:28:12 Download gff for
BO25001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31064-RB | 182..2368 | 17..2205 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:53 Download gff for
BO25001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31064-RB | 186..2372 | 17..2205 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:24:29 Download gff for
BO25001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31064-RB | 186..2372 | 17..2205 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:24:29 Download gff for
BO25001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27229817..27230444 | 1579..2205 | 99 | <- | Minus |
| 3R | 27230568..27230665 | 1481..1578 | 100 | <- | Minus |
| 3R | 27232473..27232875 | 1078..1480 | 100 | <- | Minus |
| 3R | 27232935..27233185 | 827..1077 | 100 | <- | Minus |
| 3R | 27233248..27233681 | 393..826 | 100 | <- | Minus |
| 3R | 27238525..27238900 | 17..392 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:53 Download gff for
BO25001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23055539..23056166 | 1579..2205 | 99 | <- | Minus |
| arm_3R | 23056290..23056387 | 1481..1578 | 100 | <- | Minus |
| arm_3R | 23058195..23058597 | 1078..1480 | 100 | <- | Minus |
| arm_3R | 23058657..23058907 | 827..1077 | 100 | <- | Minus |
| arm_3R | 23058970..23059403 | 393..826 | 100 | <- | Minus |
| arm_3R | 23064247..23064622 | 17..392 | 100 | | Minus |
BO25001.pep Sequence
Translation from 16 to 2221
> BO25001.pep
MSTDDLLVRRERSEDSQSSSVSIPVTPTTGGAAPAPSAPTSSLDRLRNTF
RRTESISSQIFSHISTQFSNAAAAAASSEVIDGTTTYPYPDEPAPPVVPV
APDTVASASASSPSPSKLKAKRLKRARDTAEIERSNLVNICKLVVKELLE
QSLRYGRMLDSDHLPLQHFFIVIEHVLGHGLRPKKGLLGPRKELWDLLQS
VEHYCPEAQDITASVRDLPTVRTHIGRARAWLRIALMQKKLSDYLQALIE
HREDSLFDYYEPHALMMSDEIVVIMGILVGLNVIDCNLCVKEEDLDSQQG
VIDFSLYLRSSSRNADAAPEDSAPPALLDATGQGNMIAVLDQKNYIEELN
RHLNATVGNLQAKVESLTTTNALMKEDLAIARNSLLALQAENQAMRQSTS
AGDNNSTGSGGSSDKDKEKASEELVEERRKNSELEKELKLQVSLKAESDM
AMKLLEKDIHEKQDTIVSLRRQLDDIKQINLEMYRKLQDCKASLTHKTEL
MTKLEVQKEDMASTIDQLEKKWSHDKSNLGEILKTTSQTLTTQVTASEER
AARAEAESRIEREWRISLQEKELKLKEKIANLQGCLKELSEEKERNGKLK
ADLDKVRTQWSEAQTTLEELGIQLSVSKLKVSEMQDQERRQRQLLSGSAQ
SLQAMPEAVGSPGIWAPDSIATHCTACEREFNLTRRKHHCRSCGEIFCKA
CSEHTLPLLNAQGQPGKPVRVCDNCYAAKASFLDH
BO25001.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:02:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31064-PB | 729 | CG31064-PB | 1..729 | 1..729 | 3685 | 100 | Plus |
| CG31064-PG | 877 | CG31064-PG | 274..877 | 126..729 | 3069 | 100 | Plus |
| CG31064-PA | 667 | CG31064-PA | 1..522 | 1..522 | 2503 | 95.4 | Plus |
| CG31064-PF | 815 | CG31064-PF | 274..670 | 126..522 | 1887 | 94 | Plus |
| CG31064-PE | 862 | CG31064-PE | 321..717 | 126..522 | 1884 | 93.7 | Plus |
