BO25007.complete Sequence
1939 bp assembled on 2010-06-25
GenBank Submission: KX798327
> BO25007.complete
GAAGTTATCAGTCGACATGGAGCTACCGAAGGAGTTATCCGTTGCGGAGA
TCCGTAATTACATGTTGGCAAACGAGTGCAAGGTGACAAATCACGCCTTG
GTGAAGCACTTCAAGAAATTCCTAACTCACCCGCAGTCGCAAAATGAGGC
TCGCAAGCGATTCAAGACCTATGTCACACTGCTGTCCACCATCAAGAACG
AGAACAATCAGAAGTTTTTGATATTGCGCAAGAAATACGTAAACGAATGC
CCCACGGATGAGGTTGTGGAGCGCGCGGTGGCCGCCGCATCTGGTATTCC
GGAGCCCTCAAGTCCCGGCGGCGCATCTCTTAACTTTGACTCGCCCATGA
GGCAGCCACCGCCATATAAACCGCCGCCCATGGTCACCTCTCCGCCAGCC
GTTTCCATTGCCAAGGAGCACCAGGAGAATTACCAGGAGTGCGTGGACGA
ATTCACGGCTGCCATAAAGCGCATTGAGCCAGCACGCTTGGAGAGGCGAA
CGTCGGTCAAGTCCGAGGATCTGGATCAGCAGGAGAAGCCGGAGAAAACG
TCTCGATCGAATTCCATCGATGTGATCGACAACAAGGAGAACATACCACG
TTTCTCCTTCTCCTCGGAGGCCTCCTCGGCGTCCAGCACTTCCATTGAAA
AGCCGGAGATGGCTGATCCCACAGCTCCCGCCGCCGTAGGCGATGTGGCC
GAGAATCCCATCAGCGTGAAGGAGGCCACGCGCAAATTTAATCGGATGGC
GTCTGAAGAAGAGGCTAAAATCATATCGCCGCCAGCTAAGAAGAAGCCAG
AGAAGCAATTAATCGAGGAGAAGGATTCACCGGAGGTTACGCTGGCGCAT
CCCAAGGCAAAGGAGTGGATAGTCTCGATGGCGAAGGCTAATTACCAGGA
GCTGGCCAAGATGGCCAGTGAGTATCCGGAACTGGTTAAGCTGCAGTGCC
CTGCAACGGGCTATACCGCTCTACACTGGGCAGCGAAGCACGGAAACGAG
GATGTGGTTAAACTAATTGCCGGCACCTACAAGGCGGATGTGAATGCGAG
AACGAACGGGGGATACACTCCTCTCCATTTGGCTACCCAGTTTGGTAGGG
ATAATATCTTTGAATTACTCTGGAATGTCTACAAGGCCAATCGGGACATC
ATGGACTGGAGCGGCAACAAGCCACTGGACTACAGTCGCCAGCGGTCGAG
CGTCTCGGCATCGACGTGCAGCAAAATCAAGGCTCGCAAAAAGCATGCAA
TCGAAAAAGATTTGGGCTTCCTACGGATTGGTTCTCTGAATGTCCGGGTA
AAGAAGACCACCGAGGCGTTCAGCAACTTCTTGGGAGTGGGCAATGGCAG
TGGGGTGGCGCCGACGGGCTATGGCAATGGCGGGTCGGCGGTAGCAGCAA
ATCGCCATCACCCTCGATCTCACCGAGCCCCTCATCAGCGTCATCATCAC
CACGTTGGTACGACACGGAGTCGCCATCCGAATCAGAGGGCAGCGATGAG
CACACCCTATGCCACGAACGGCGGCCTTCCGTCGAGGGCGAGTGTGCCCA
ATAGCCGGAACATCTACGATGGGGTGCACAAGTCGTGGGGATCGGCGGAC
AATATACCGCATCGATCGGAGGACCTAATGCCGCCGCCCAAGGCGGTGGA
GTATATCAGCAAGCGGAATAAGTCCTCGAAGCGTTCGTCCTATGCATCGA
ATACCACCGATTCGCCGCGTGATTCCATCTGCTCCTCGAACTCCAGCTCG
AATCTGAATGGTGGCTATAGCAGCATGCCTACGACCCCGAATCAGTTGCG
TGCTCCCAAGGGGATCGCCGCATCCTTCGCCGTGGACTCCGACTCGGACT
CCGCCTGCGGATTCGACTCAACCTGGTCGGTCAATTGTCGCGGTTCCTCG
AGCAGCAATCCTTCGCAATCCGCAAGCTTTCTAGACCAT
BO25007.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:45:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sowah-RI | 1908 | CG10632-PI | 1..1905 | 17..1921 | 9525 | 100 | Plus |
| sowah-RH | 1584 | CG10632-PH | 1..1208 | 17..1224 | 6040 | 100 | Plus |
| sowah-RG | 2343 | CG10632-PG | 1..1207 | 17..1223 | 6035 | 100 | Plus |
| sowah-RH | 1584 | CG10632-PH | 1254..1584 | 1224..1554 | 1655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:45:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sowah-RI | 2314 | CG10632-RI | 105..2009 | 17..1921 | 9525 | 100 | Plus |
| sowah-RH | 2360 | CG10632-RH | 105..1312 | 17..1224 | 6040 | 100 | Plus |
| sowah-RG | 2749 | CG10632-RG | 105..1311 | 17..1223 | 6035 | 100 | Plus |
| sowah-RH | 2360 | CG10632-RH | 1358..2055 | 1224..1921 | 3490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:45:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12537818..12538493 | 1921..1246 | 3365 | 99.9 | Minus |
| 3L | 28110227 | 3L | 12571539..12572200 | 805..144 | 3310 | 100 | Minus |
| 3L | 28110227 | 3L | 12564899..12565041 | 946..804 | 715 | 100 | Minus |
| 3L | 28110227 | 3L | 12572307..12572438 | 148..17 | 645 | 99.2 | Minus |
| 3L | 28110227 | 3L | 12540057..12540146 | 1223..1134 | 450 | 100 | Minus |
| 3L | 28110227 | 3L | 12541288..12541377 | 1054..965 | 450 | 100 | Minus |
| 3L | 28110227 | 3L | 12540390..12540463 | 1133..1060 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:45:04 has no hits.
BO25007.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:27:59 Download gff for
BO25007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10632-RF | 85..1977 | 17..1923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:35 Download gff for
BO25007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sowah-RI | 105..2009 | 17..1923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:24:14 Download gff for
BO25007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sowah-RI | 105..2009 | 17..1923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:24:14 Download gff for
BO25007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12537816..12538488 | 1251..1923 | 99 | <- | Minus |
| 3L | 12538550..12538576 | 1224..1250 | 100 | <- | Minus |
| 3L | 12540057..12540146 | 1134..1223 | 100 | <- | Minus |
| 3L | 12540390..12540462 | 1055..1133 | 92 | <- | Minus |
| 3L | 12541288..12541377 | 965..1054 | 100 | <- | Minus |
| 3L | 12548477..12548496 | 947..964 | 75 | <- | Minus |
| 3L | 12564899..12565039 | 806..946 | 100 | <- | Minus |
| 3L | 12571539..12572200 | 144..805 | 100 | <- | Minus |
| 3L | 12572312..12572438 | 17..143 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:35 Download gff for
BO25007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12533490..12533562 | 1055..1133 | 92 | <- | Minus |
| arm_3L | 12534388..12534477 | 965..1054 | 100 | <- | Minus |
| arm_3L | 12541577..12541596 | 947..964 | 75 | <- | Minus |
| arm_3L | 12557999..12558139 | 806..946 | 100 | <- | Minus |
| arm_3L | 12530916..12531588 | 1251..1923 | 99 | <- | Minus |
| arm_3L | 12531650..12531676 | 1224..1250 | 100 | <- | Minus |
| arm_3L | 12533157..12533246 | 1134..1223 | 100 | <- | Minus |
| arm_3L | 12564639..12565300 | 144..805 | 100 | <- | Minus |
| arm_3L | 12565412..12565538 | 17..143 | 100 | | Minus |
BO25007.pep Sequence
Translation from 16 to 1939
> BO25007.pep
MELPKELSVAEIRNYMLANECKVTNHALVKHFKKFLTHPQSQNEARKRFK
TYVTLLSTIKNENNQKFLILRKKYVNECPTDEVVERAVAAASGIPEPSSP
GGASLNFDSPMRQPPPYKPPPMVTSPPAVSIAKEHQENYQECVDEFTAAI
KRIEPARLERRTSVKSEDLDQQEKPEKTSRSNSIDVIDNKENIPRFSFSS
EASSASSTSIEKPEMADPTAPAAVGDVAENPISVKEATRKFNRMASEEEA
KIISPPAKKKPEKQLIEEKDSPEVTLAHPKAKEWIVSMAKANYQELAKMA
SEYPELVKLQCPATGYTALHWAAKHGNEDVVKLIAGTYKADVNARTNGGY
TPLHLATQFGRDNIFELLWNVYKANRDIMDWSGNKPLDYSRQRSSVSAST
CSKIKARKKHAIEKDLGFLRIGSLNVRVKKTTEAFSNFLGVGNGSGVAPT
GYGNGGSAVAANRHHPRSHRAPHQRHHHHVGTTRSRHPNQRAAMSTPYAT
NGGLPSRASVPNSRNIYDGVHKSWGSADNIPHRSEDLMPPPKAVEYISKR
NKSSKRSSYASNTTDSPRDSICSSNSSSNLNGGYSSMPTTPNQLRAPKGI
AASFAVDSDSDSACGFDSTWSVNCRGSSSSNPSQSASFLDH
BO25007.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:02:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sowah-PI | 635 | CG10632-PI | 1..635 | 1..635 | 3316 | 100 | Plus |
| sowah-PH | 527 | CG10632-PH | 1..408 | 1..408 | 2096 | 99.3 | Plus |
| sowah-PJ | 548 | CG10632-PJ | 1..479 | 1..474 | 2091 | 86.7 | Plus |
| sowah-PG | 780 | CG10632-PG | 1..479 | 1..474 | 2091 | 86.7 | Plus |
| sowah-PG | 780 | CG10632-PG | 548..780 | 403..635 | 1231 | 99.6 | Plus |
