BO25036.complete Sequence
2188 bp assembled on 2010-06-25
> BO25036.complete
GAAGTTATCAGTCGACATGTCGAATAACGGGCCGACGGCCAGCAGCAACT
ACCAGCTGCTGAACAGTGCGAATCTGCGAGATCTCATCGACGGCCAACGC
CACTCGCATCACGTAAGCAGGCGCGATGACAGCCAAAGCCACAGTCATAG
CGAAAGCCCAAGTCACATTGGCCACATTAGCCAAAGCAACCAAAGCATAC
CAAGCCTCCCAAGCCTGCCAAGCGGCAAAAACAAGACGAAAGATGGCAAA
AAGCTGAAGGCAACTTTAACGGCGGCCATGTCATCGTCGCTGCTGCGACG
CAAGGCGCACAGCAATCACAGTCAACAGCAGAAACTGCAACTGCAACAGC
AACAGCAAGAGCAACATCAGCAACAGCTGCAGCAGCAACAATTGAGAAGC
AACAACAGCAAGGCAATTGCAAATGCTGCCCGCCATTCGCTGGGTCATTC
ACCCTCCGCTGCCGCCGCCGCTGCTGCAGTGCAGCAGACGCTTGTCTACG
AGCGGCGACGCGTCAGCAGCGCCCACTCCTCCCCCTCGCCCACCTCCAGG
CACCACTCCCCAGTGCACCAGTGCATGCTGATGCGGCGGCGCAGCGACTA
CAGCGTCGAGCAGATCGAGCAGTGGAAACGCCAGCAGCAATTGTTGCCGC
GATCCGGACGCAAGATTAGCTTGCCTGTCGCTGATCCGTTCCTAGAGAAA
GTAAATCTATCAGATCTGGAAGAGGACGACTCACAGATCTTCGTGAAGTT
CTTTCGTTTTCACAAGTGCTATGATCTGATACCCACCTCCGCCAAGTTGG
TTGTCTTCGACACCCAGCTTCTTGTAAAGAAGGCCTTCTACGCCCTCGTC
TACAACGGTGTGCGAGCGGCACCGCTCTGGGATTCGGAGAAGCAACAGTT
CGTGGGCATGCTAACCATCACGGACTTTATCAAGATCCTGCAAATGTATT
ACAAATCGCCAAATGCGTCCATGGAGCAGCTGGAAGAGCACAAACTGGAC
ACGTGGCGGAGCGTGCTGCACAACCAGGTGATGCCGTTGGTCAGCATCGG
ACCGGATGCGTCCCTCTACGATGCCATCAAAATTCTCATCCACAGCCGCA
TACATCGCCTGCCCGTCATCGATCCGGCGACCGGCAATGTCCTCTACATC
CTGACACATAAACGCATACTTAGGTTCCTTTTCCTATACATTAATGAATT
ACCAAAGCCCGCGTACATGCAAAAAAGTTTGCGCGAACTGAAGATTGGCA
CCTATAACAACATCGAGACCGCCGACGAGACGACGAGCATCATCACGGCG
CTCAAGAAATTTGTGGAGCGACGAGTCTCAGCCCTGCCACTAGTGGATTC
CGATGGTCGCCTCGTTGACATTTACGCAAAGTTTGATGTGATTAATCTCG
CCGCCGAGAAAACCTACAACGATCTCGATGTTTCGCTGCGCAAAGCCAAC
GAGCACCGGAACGAGTGGTTCGAGGGCGTGCAGAAGTGCAATCTGGACGA
ATCGCTCTACACGATCATGGAACGAATCGTCCGCGCCGAAGTACATCGAC
TGGTGGTGGTCGACGAGAATCGCAAAGTGATCGGCATTATCTCGCTGTCC
GATATACTGCTCTACCTCGTCCTGCGACCAAGCGGTGAAGGCGTCGGTGG
CTCGGAGAGCTCATTGCGTGCGTCCGATCCCGTTCTGCTGCGCAAAGTGG
CTGAGGTTGAAATACCAGCGACAGCCGCAGCGGCGACGACAACAACCCCG
CCTCGCAGTCCATCGGCCGGATCCGGCAATCGCAGCCTGATCGAGGACAT
ACCCGAAGAGGAGACGGCGCCGGCGAGGAGCGACGATGCCGACAGTGATA
ACAATAAGTCCGCCAGTGAGGATAAAGCCAACAATAACCAGCACGACCAG
ACGACGACGGCTGCGACAGCTAATGGTGATAGCAACAACAGCCCCGTAGA
AGTGTCCTTTGCCGATGAGGCGCAGGAAGAAGAAGCTGCCGACCAGGTCG
AGCGCAGCAATTGTGATGATGATGACCAGCCAGCGTTAGCGGAGATTGAG
CGCAAGAATGCATCGATGGACGACGACGAGGACGATGGGATGAGCAGCGC
CGTGTCCGCTGCCTCCGCTTTGGGCCAGTCACTGACGCCCGCGGCGCAAG
AAATGGCGTTGGTTAGTGAAGCAAGCTTTCTAGACCAT
BO25036.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:45:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-RG | 2445 | CG17299-PG | 289..2442 | 17..2170 | 10770 | 100 | Plus |
| SNF4Agamma-RE | 2721 | CG17299-PE | 1219..2718 | 671..2170 | 7500 | 100 | Plus |
| SNF4Agamma-RC | 2721 | CG17299-PC | 1219..2718 | 671..2170 | 7500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:45:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-RG | 2786 | CG17299-RG | 470..2623 | 17..2170 | 10770 | 100 | Plus |
| SNF4Agamma-RE | 3308 | CG17299-RE | 1646..3145 | 671..2170 | 7500 | 100 | Plus |
| SNF4Agamma-RC | 3197 | CG17299-RC | 1535..3034 | 671..2170 | 7500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:45:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21211748..21212524 | 1394..2170 | 3885 | 100 | Plus |
| 3R | 32079331 | 3R | 21205397..21206050 | 17..670 | 3270 | 100 | Plus |
| 3R | 32079331 | 3R | 21210788..21211080 | 719..1011 | 1465 | 100 | Plus |
| 3R | 32079331 | 3R | 21211387..21211590 | 1190..1393 | 1020 | 100 | Plus |
| 3R | 32079331 | 3R | 21211141..21211319 | 1011..1189 | 895 | 100 | Plus |
| 3R | 32079331 | 3R | 21207619..21207667 | 671..719 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:45:13 has no hits.
BO25036.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:28:02 Download gff for
BO25036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RG | 468..2621 | 17..2172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:40 Download gff for
BO25036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RG | 470..2623 | 17..2172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:24:18 Download gff for
BO25036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RG | 470..2623 | 17..2172 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:24:18 Download gff for
BO25036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21205397..21206050 | 17..670 | 100 | -> | Plus |
| 3R | 21207619..21207667 | 671..719 | 100 | -> | Plus |
| 3R | 21210789..21211079 | 720..1010 | 100 | -> | Plus |
| 3R | 21211141..21211319 | 1011..1189 | 100 | -> | Plus |
| 3R | 21211387..21211590 | 1190..1393 | 100 | -> | Plus |
| 3R | 21211748..21212524 | 1394..2172 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:40 Download gff for
BO25036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17037470..17038246 | 1394..2172 | 99 | | Plus |
| arm_3R | 17031119..17031772 | 17..670 | 100 | -> | Plus |
| arm_3R | 17033341..17033389 | 671..719 | 100 | -> | Plus |
| arm_3R | 17036511..17036801 | 720..1010 | 100 | -> | Plus |
| arm_3R | 17036863..17037041 | 1011..1189 | 100 | -> | Plus |
| arm_3R | 17037109..17037312 | 1190..1393 | 100 | -> | Plus |
BO25036.pep Sequence
Translation from 16 to 2188
> BO25036.pep
MSNNGPTASSNYQLLNSANLRDLIDGQRHSHHVSRRDDSQSHSHSESPSH
IGHISQSNQSIPSLPSLPSGKNKTKDGKKLKATLTAAMSSSLLRRKAHSN
HSQQQKLQLQQQQQEQHQQQLQQQQLRSNNSKAIANAARHSLGHSPSAAA
AAAAVQQTLVYERRRVSSAHSSPSPTSRHHSPVHQCMLMRRRSDYSVEQI
EQWKRQQQLLPRSGRKISLPVADPFLEKVNLSDLEEDDSQIFVKFFRFHK
CYDLIPTSAKLVVFDTQLLVKKAFYALVYNGVRAAPLWDSEKQQFVGMLT
ITDFIKILQMYYKSPNASMEQLEEHKLDTWRSVLHNQVMPLVSIGPDASL
YDAIKILIHSRIHRLPVIDPATGNVLYILTHKRILRFLFLYINELPKPAY
MQKSLRELKIGTYNNIETADETTSIITALKKFVERRVSALPLVDSDGRLV
DIYAKFDVINLAAEKTYNDLDVSLRKANEHRNEWFEGVQKCNLDESLYTI
MERIVRAEVHRLVVVDENRKVIGIISLSDILLYLVLRPSGEGVGGSESSL
RASDPVLLRKVAEVEIPATAAAATTTTPPRSPSAGSGNRSLIEDIPEEET
APARSDDADSDNNKSASEDKANNNQHDQTTTAATANGDSNNSPVEVSFAD
EAQEEEAADQVERSNCDDDDQPALAEIERKNASMDDDEDDGMSSAVSAAS
ALGQSLTPAAQEMALVSEASFLDH
BO25036.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:02:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-PG | 814 | CG17299-PG | 97..814 | 1..718 | 3631 | 100 | Plus |
| SNF4Agamma-PE | 906 | CG17299-PE | 407..906 | 219..718 | 2522 | 100 | Plus |
| SNF4Agamma-PC | 906 | CG17299-PC | 407..906 | 219..718 | 2522 | 100 | Plus |
| SNF4Agamma-PF | 1400 | CG17299-PF | 901..1400 | 219..718 | 2522 | 100 | Plus |
| SNF4Agamma-PS | 1400 | CG17299-PS | 901..1400 | 219..718 | 2522 | 100 | Plus |
