BO25047.complete Sequence
3136 bp assembled on 2010-08-11
GenBank Submission: KX797231
> BO25047.complete
GTCATTTTTTCGTGAAAACGCTTTCGCGTTTTTCGTGCGCCGCTTCAATA
GCATACATTATACGAAGTTATCAGTCGACATGTTTCCACCGCGGTTGCTG
CGAATCGCATTTGTGATATGCCTGCTGATTGTCTTGCTCTCGCCCTCCGC
AGACAGTGCACAGACCAAGACACGTCGTCGACTGCGGCGTCCCACAACAT
CGGTCAGCTCCTCGAGGAGCAACCTCATCGAGTCTAAGAAGTCCACTGAG
GCTCCAGAGGCTGAGAAGCGTATTGACCAGATCACCTCCGCCACCACCAC
AAGTGCTCGTCGTACACGCCTTCGTTCCAAGGCGAAATTGGGAGCAGCTG
CAGCTGGAGGAGCAGCCGTAGCAGCTGGAGGAACTGCTCTCGTGGCCAGT
GGATCTTCACTAAAGGGCAAGAAGACTAAGGTGGACGATGGAACGCCAAA
GATTGTGTGCTACTACACCAACTGGTCGCAGTACCGTGTCAAGATTGGCA
AGTTCGTTCCGGAGGACATTCCAGCCGATCTCTGCACCCACATTATCTTC
GCTTTCGGATGGCTGAAGAAGAACAAGCTGAGTTCTTATGAGTCCAACGA
TGAGACCAAGGATAATGTCCCCGGACTGTACGAACGTATGATGACCCTCA
AAAAGGCCAATCCTAAATTAAAGATTCTTCTAGCTCTTGGAGGCTGGTCC
TTTGGCACCCAGAAATTCAAGGACATGTCCTCCACGCGATACACCCGCCA
GACCTTTGTCTACTCGGCCATTCCTTTCCTGCGCAAGCGCGGCTTCGATG
GTCTGGATATGGATTGGGAATACCCCAAGGGTTCCGATGACAAGAAGAAC
TTCGTTCTGCTGCTGAAGGAACTGCGCGAAGCCTTTGAAGCTGAGGCCCA
GGAACTGAAGAAGCCCCGTCTCTTGCTTTCCGCCGCCGTGCCAGTGGGTC
CCGACAATATCCGTGGTGGATATGATGTGCCTGCCATCGCCAGTTATCTG
GATTTTATCAATCTGATGGCCTACGATTTCCACGGAAAGTGGGAACGCGA
GACTGGACACAATGCCCCACTTTATGCTCCCTCCACCGATTCGGAGTGGC
GCAAACAACTGTCCGTTGACAATGCCGCCAGTTTATGGGTTAAGATGGGC
GCTCCCAAGGAGAAACTGGTCATTGGAATGCCGACCTATGGACGCTCCTT
CACTTTGGCTAATCCGGATAAGCATGGTCCCAATGCCCCCGCATCGGGGG
GTGGACGCGAAGGTGTCTACACCAAGGAAGGTGGTTTCTTGGCCTACTAC
GAGATCTGCGAAATGCTGCTGAATGGCGCTGTTTATGTGTGGGATGACGA
AATGAAGGTTCCCTATCTTGTTGATGGAGACCAGTGGGTTGGCTTCGATG
ATGAGCGCGCCATTAGGAACAAGATGCACTGGATCAAGTCGAATGGCTTC
GGTGGTGCCATGGTCTGGACCATCGACATGGACGACTTTAAGGGAGAGGT
GTGCGGTGGCAATGTCAAGTATCCCCTGATTGGAGCTATGCGGGAGGAAC
TCCTGGGCATTTCCCGAGGAAAGGAGGCCAAGGATGTTAACTGGACCGCC
GTTGCGGCCACATTTGAGGATATCGAAGAGAAACCAGAACCCATTAAGAT
ATCTGTGGATGAGATTCTCAACAAGGTGCGAAAGCCACAGGTACAGAAGA
AGCAGCGCATCAAGTCTGGAGCAAATGCTGTCGCCTCAAACACTCGTCCT
GCCCAGGTGTTCTGTTATCTGACCAGCTGGTCGGCCAAGCGACCTGGAGC
CGGTAAATTCCAGCCGGAGAACATCGATCCCAAGCTGTGCACCCACATCG
TGTATGCCTTCGCCACTCTTCAGGACTACAAGCTAACAGAGGCCACCGAT
GATGATCCCGAGAATTATGAGAGTGTAATTGCCTTGCGTGACAATAATCC
CGATCTGCAGATCCTTTTGGCCATCGGAGGGTGGGCCTTTGGTTCCACTC
CCTTCAAAGAGCTCACCTCGAATGTGTTCCGTATGAATCAGTTCGTTTAC
GAGGCCATCGACTTTCTGCGCGACTATAAGTTCAACGGCTTGGATGTGGA
TTGGGAGTATCCTCGTGGTGCTGAAGATCGTGTGGCCTACGTCAGTCTGC
TAAAGGAATTGCGAGTGGCTTTTGAGGGTGAGGCCAAGTCCTCTGGACTG
CCACGCCTACTGCTCACTGCCGCTGTACCCGCCTCCTTCGAGGCCATCGC
CGCTGGCTACGATGTTCCAGAGATCTCGAAGTACCTGGACTTCATTAACG
TGATGACCTATGACTTCCACGGACAGTGGGAACGCACAGTGGGACACAAT
TCGCCTCTGTTTGCATTGGAATCGGCTACCGGTTACCAGAAGAAACTGAC
CGTTGATTACAGCGCGAGGGAGTGGGTGAAACAGGGTGCTCCCAAGGAAA
AGCTGCTTATCGGCATGCCCACCTATGGACGCAGTTTCGAGCTTGTCAAT
GACACTCAATTCGATATTGGATCCCCCTCGTCCGGCGGTGGCAAGGCGGG
CAAGTTCACCAACGAGGCCGGGTTCCTCAGCTACTACGAGGTCTGCTCCT
TCCTGGCGGCAGACAACACCACCCTAGTTTGGGACTCGGAGCAGCAGGTG
CCCTTCGCTTACCGCGGCAACCAGTGGGTGGGCTTCGATGATGAGCGTTC
TCTCAAGACCAAGACGGAATGGCTGAAGGAGCAGGGCTTTGGAGGCATCA
TGGTGTGGTCCATCGACATGGATGACTTCTCCGGTCGCTGCGGCAGTGGT
AAGTACCCACTTCTGACTGCCTTGAACGACGAGCTGAAGGACTACAAGGT
GGAGTTGGAATACGATGGTCCTTATGAATCCCATGGCCCACGAGGAGCAT
ACACCACCAAAGATCCTCATGATGTGACCTGCGCCGAAGAGGACGGACAC
ATCAGCTACCATAAGGATTGGGCCGACTGCACCCACTACTACATGTGCGA
GGGCGAGCGGAAACACCACATGCCCTGTCCCGCCAACCTGGTCTTCAATC
CGCAGGAGAACGTCTGCGACTGGCCCGAGAACGTCGAGGGATGCCACACG
CCCACGGAGGCGCCAGCCGCAAGCTTTCTAGACCAT
BO25047.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:54:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cht7-RA | 3042 | CG1869-PA | 1..3039 | 80..3118 | 15195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cht7-RA | 3953 | CG1869-RA | 283..3321 | 80..3118 | 15195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3092152..3093122 | 2713..1743 | 4855 | 100 | Minus |
| 3L | 28110227 | 3L | 3093359..3094317 | 1630..672 | 4795 | 100 | Minus |
| 3L | 28110227 | 3L | 3094378..3094886 | 673..165 | 2545 | 100 | Minus |
| 3L | 28110227 | 3L | 3091880..3092083 | 2915..2712 | 1020 | 100 | Minus |
| 3L | 28110227 | 3L | 3091617..3091819 | 3118..2916 | 1015 | 100 | Minus |
| 3L | 28110227 | 3L | 3093187..3093300 | 1742..1629 | 570 | 100 | Minus |
| 3L | 28110227 | 3L | 3097663..3097745 | 164..82 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:54:27 has no hits.
BO25047.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-11 10:18:46 Download gff for
BO25047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht7-RA | 281..3319 | 80..3120 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:04 Download gff for
BO25047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht7-RA | 283..3321 | 80..3120 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:26 Download gff for
BO25047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht7-RA | 283..3321 | 80..3120 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:26 Download gff for
BO25047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3091615..3091819 | 2916..3120 | 99 | <- | Minus |
| 3L | 3091880..3092081 | 2714..2915 | 100 | <- | Minus |
| 3L | 3092152..3093122 | 1743..2713 | 100 | <- | Minus |
| 3L | 3093187..3093298 | 1631..1742 | 100 | <- | Minus |
| 3L | 3093359..3094315 | 674..1630 | 100 | <- | Minus |
| 3L | 3094378..3094886 | 165..673 | 100 | <- | Minus |
| 3L | 3097663..3097757 | 68..164 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:04 Download gff for
BO25047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3091615..3091819 | 2916..3120 | 99 | <- | Minus |
| arm_3L | 3091880..3092081 | 2714..2915 | 100 | <- | Minus |
| arm_3L | 3092152..3093122 | 1743..2713 | 100 | <- | Minus |
| arm_3L | 3093187..3093298 | 1631..1742 | 100 | <- | Minus |
| arm_3L | 3093359..3094315 | 674..1630 | 100 | <- | Minus |
| arm_3L | 3094378..3094886 | 165..673 | 100 | <- | Minus |
| arm_3L | 3097663..3097757 | 68..164 | 94 | | Minus |
BO25047.pep Sequence
Translation from 79 to 3136
> BO25047.pep
MFPPRLLRIAFVICLLIVLLSPSADSAQTKTRRRLRRPTTSVSSSRSNLI
ESKKSTEAPEAEKRIDQITSATTTSARRTRLRSKAKLGAAAAGGAAVAAG
GTALVASGSSLKGKKTKVDDGTPKIVCYYTNWSQYRVKIGKFVPEDIPAD
LCTHIIFAFGWLKKNKLSSYESNDETKDNVPGLYERMMTLKKANPKLKIL
LALGGWSFGTQKFKDMSSTRYTRQTFVYSAIPFLRKRGFDGLDMDWEYPK
GSDDKKNFVLLLKELREAFEAEAQELKKPRLLLSAAVPVGPDNIRGGYDV
PAIASYLDFINLMAYDFHGKWERETGHNAPLYAPSTDSEWRKQLSVDNAA
SLWVKMGAPKEKLVIGMPTYGRSFTLANPDKHGPNAPASGGGREGVYTKE
GGFLAYYEICEMLLNGAVYVWDDEMKVPYLVDGDQWVGFDDERAIRNKMH
WIKSNGFGGAMVWTIDMDDFKGEVCGGNVKYPLIGAMREELLGISRGKEA
KDVNWTAVAATFEDIEEKPEPIKISVDEILNKVRKPQVQKKQRIKSGANA
VASNTRPAQVFCYLTSWSAKRPGAGKFQPENIDPKLCTHIVYAFATLQDY
KLTEATDDDPENYESVIALRDNNPDLQILLAIGGWAFGSTPFKELTSNVF
RMNQFVYEAIDFLRDYKFNGLDVDWEYPRGAEDRVAYVSLLKELRVAFEG
EAKSSGLPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQW
ERTVGHNSPLFALESATGYQKKLTVDYSAREWVKQGAPKEKLLIGMPTYG
RSFELVNDTQFDIGSPSSGGGKAGKFTNEAGFLSYYEVCSFLAADNTTLV
WDSEQQVPFAYRGNQWVGFDDERSLKTKTEWLKEQGFGGIMVWSIDMDDF
SGRCGSGKYPLLTALNDELKDYKVELEYDGPYESHGPRGAYTTKDPHDVT
CAEEDGHISYHKDWADCTHYYMCEGERKHHMPCPANLVFNPQENVCDWPE
NVEGCHTPTEAPAASFLDH
BO25047.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:44:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cht7-PA | 1013 | CG1869-PA | 1..1013 | 1..1013 | 5404 | 100 | Plus |
| Cht6-PF | 1367 | CG43374-PF | 31..404 | 559..919 | 852 | 44.4 | Plus |
| Cht6-PG | 1580 | CG43374-PG | 31..404 | 559..919 | 852 | 44.4 | Plus |
| Cht6-PH | 2225 | CG43374-PH | 31..404 | 559..919 | 852 | 44.4 | Plus |
| Cht8-PA | 476 | CG9357-PA | 15..475 | 544..1003 | 829 | 37.1 | Plus |
| Cht6-PF | 1367 | CG43374-PF | 31..417 | 124..501 | 796 | 41.8 | Plus |
| Cht6-PG | 1580 | CG43374-PG | 31..417 | 124..501 | 796 | 41.8 | Plus |
| Cht8-PA | 476 | CG9357-PA | 13..402 | 101..493 | 741 | 39.8 | Plus |
