BO25055.complete Sequence
1438 bp assembled on 2010-06-03
GenBank Submission: KX797427
> BO25055.complete
GAAGTTATCAGTCGACATGGCCAATATAATGAGAAGAACGTTGATTCCTG
GACTTTCACACTTGAGGCTGCGGCCACAACTTGTTGCAGCTGGATCGGCC
GCGTTAACTTCTCAGGAGACGCGACGGGGAGCAGCCAAGTGGTATCCAGA
CCCTGAGTTCATGAAGCAGTTTAGCGGCCCGGTGATGTATCCAGACGAGG
TCACATCACTTTGGACAGTGCCACCATGGAACAGCAAAGTAACGCCTGTC
GAAAAGTCGGTGCGTAATCTGACCTTGAACTTCGGCCCACAACATCCCGC
CGCCCACGGAGTCCTTCGTCTTGTGCTGGAGCTGGATGGAGAGACCGTTA
TGCGTGCCGATCCGCATATTGGGCTGCTGCACCGTGGGACCGAAAAGCTC
ATAGAGTACAAGACATACACCCAGGCATTGCCGTATTTTGACCGGCTGGA
CTACGTCTCGATGATGTGCAACGAGCAATGCTACTCTCTGGCTGTAGAAA
AACTCCTTAATATTGATGTGCCTCTCCGTGCTAAGTACATTCGAACTCTC
TTTGCCGAGATTACTCGTATTCTCAATCACATTATGGCCGTCGGAACACA
TGCCTTAGATGTTGGTGCTCTAACGCCATTTTTTTGGCTATTCGAGGAGC
GAGAGAAAATGATGGAATTCTATGAGCGAGTTTCTGGTGCCCGAATGCAT
GCTGCCTACATACGTCCTGGCGGGGTGTCATTGGATATGCCTCTTGGTCT
TATGGACGATATCTATGAGTTTGCATCAAAGTTTGCTGAGCGGTTGGACG
AAGTGGAGGATGTGTTAACTACAAATCGAATCTGGGTGCAGCGGACCGAG
GACATTGGGATCGTAACTGCAGAAGAAGCTTTGAACTATGGCTTCAGTGG
AGTTATGTTGCGTGGATCTGGCATAAAATGGGATCTTCGAAAGCAGCAGC
CGTACGATGCCTATAATTTGGTAAACTTTGATGTTCCCATCGGCACCAAA
GGGGACTGCTACGACCGATATCTTTGCCGGGTCGAGGAAATGCGCCAGTC
ATTACGAATTATTGATCAATGCCTAAACCAAATGCCTGCTGGAGAAATTA
AAACGGATGATGCCAAGGTGGCGCCTCCGTCACGGTCCGAAATGAAGACA
TCCATGGAGGCACTTATTCACCACTTCAAGTTATTTACCCAAGGATATCA
AGTTCCACCCGGGGCAACATACACGGCAATAGAGGCTCCGAAGGGCGAGT
TTGGAGTTTACCTTATATCAGATGGGTCCAGTCGTCCATACCGGTGCAAA
ATCAAAGCTCCAGGGTTTGCTCACTTGGCAGCTTTAGAGAAGATTGGAAA
GCAGCACATGCTAGCCGACGTCGTTGCAATAATTGGAACTTTGGATGTCG
TATTTGGGGAGATAGACCGTGCAAGCTTTCTAGACCAT
BO25055.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:49:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1970-RB | 1407 | CG1970-PB | 1..1404 | 17..1420 | 7020 | 100 | Plus |
| CG1970-RA | 1407 | CG1970-PA | 1..1404 | 17..1420 | 7020 | 100 | Plus |
| CG11913-RB | 1572 | CG11913-PB | 442..602 | 293..453 | 250 | 77 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:49:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1970-RB | 1584 | CG1970-RB | 107..1510 | 17..1420 | 7020 | 100 | Plus |
| CG1970-RA | 1573 | CG1970-RA | 96..1499 | 17..1420 | 7020 | 100 | Plus |
| CG11913-RB | 1700 | CG11913-RB | 465..625 | 293..453 | 250 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:49:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 568370..569057 | 1420..733 | 3440 | 100 | Minus |
| 4 | 1348131 | 4 | 569975..570178 | 545..342 | 1020 | 100 | Minus |
| 4 | 1348131 | 4 | 569113..569301 | 734..546 | 945 | 100 | Minus |
| 4 | 1348131 | 4 | 570408..570533 | 234..109 | 630 | 100 | Minus |
| 4 | 1348131 | 4 | 570234..570343 | 343..234 | 550 | 100 | Minus |
| 4 | 1348131 | 4 | 570604..570695 | 108..17 | 460 | 100 | Minus |
| 3R | 32079331 | 3R | 25358799..25358959 | 293..453 | 250 | 77 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:49:48 has no hits.
BO25055.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-03 13:59:47 Download gff for
BO25055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1970-RA | 100..1503 | 17..1422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:15 Download gff for
BO25055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1970-RA | 96..1499 | 17..1422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:58:24 Download gff for
BO25055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1970-RA | 96..1499 | 17..1422 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:58:24 Download gff for
BO25055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 570234..570343 | 234..343 | 100 | <- | Minus |
| 4 | 570409..570533 | 109..233 | 100 | <- | Minus |
| 4 | 570604..570695 | 17..108 | 100 | | Minus |
| 4 | 568368..569056 | 734..1422 | 99 | <- | Minus |
| 4 | 569114..569301 | 546..733 | 100 | <- | Minus |
| 4 | 569975..570176 | 344..545 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:15 Download gff for
BO25055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 591230..591321 | 17..108 | 100 | | Minus |
| arm_4 | 588994..589682 | 734..1422 | 99 | <- | Minus |
| arm_4 | 589740..589927 | 546..733 | 100 | <- | Minus |
| arm_4 | 590601..590802 | 344..545 | 100 | <- | Minus |
| arm_4 | 590860..590969 | 234..343 | 100 | <- | Minus |
| arm_4 | 591035..591159 | 109..233 | 100 | <- | Minus |
BO25055.pep Sequence
Translation from 16 to 1438
> BO25055.pep
MANIMRRTLIPGLSHLRLRPQLVAAGSAALTSQETRRGAAKWYPDPEFMK
QFSGPVMYPDEVTSLWTVPPWNSKVTPVEKSVRNLTLNFGPQHPAAHGVL
RLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM
CNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRILNHIMAVGTHALDVG
ALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIY
EFASKFAERLDEVEDVLTTNRIWVQRTEDIGIVTAEEALNYGFSGVMLRG
SGIKWDLRKQQPYDAYNLVNFDVPIGTKGDCYDRYLCRVEEMRQSLRIID
QCLNQMPAGEIKTDDAKVAPPSRSEMKTSMEALIHHFKLFTQGYQVPPGA
TYTAIEAPKGEFGVYLISDGSSRPYRCKIKAPGFAHLAALEKIGKQHMLA
DVVAIIGTLDVVFGEIDRASFLDH
BO25055.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:40:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1970-PB | 468 | CG1970-PB | 1..468 | 1..468 | 2454 | 100 | Plus |
| CG1970-PA | 468 | CG1970-PA | 1..468 | 1..468 | 2454 | 100 | Plus |
| CG11913-PB | 523 | CG11913-PB | 97..523 | 42..468 | 1537 | 65.5 | Plus |
