BO25109.complete Sequence
913 bp assembled on 2010-06-09
GenBank Submission: KX799494
> BO25109.complete
GAAGTTATCAGTCGACATGTCATCGCACGGCCTTGCTTACACAACAAGAA
TTGAAAGAAAGTCTTATAGAGAACTACAAATCAATAGAGATCAATACTTT
GTAACTGCGCCAAATGAAGAAGATTTGGTTATGAGTTTATCTCCAAAGGA
CACACTTATACATACTGCCATTTCCCAGCACCATCAAGTGGATACTTCTA
CTAAATTAAATACAAACGAAACATCGACACAAAATACCGTATCTACAGCA
GCCGCGGCAGCGGTTGCACATCACCACCACAACCTTTCTAGTATTCACCA
CCTCCAAAACCTGCATAGTCAGCATCAAAGTACTTTATTTAATAGTAATC
ACTCAACACCCTTTAGCGTGACCGATATCTTAAGTCCAATTGAAGAATCG
TATCGCAAACTGGAACTGAACGGAAATCCACCATCTCCGTTTCGATCAAA
CTCTAGTAGCAGCAGTATTAATTCTCCTGGAACATTAACTACATCAACTA
TGGCGAATCCGTACGCTATGGGAACCTTATATCACAGCCCAGGTGTACAG
ACCTATTGCGGACCTACCGATAACCTATCTCTGGCTGGTCACTACACTGA
CATGAGAAATTCTGCATCGTGGTACGGATCAACAGCTAACGACCCAAGAT
TTGCAATTTCACGCCTAATGAGTTCATCAGCCAGTGGAACAATGAGTCAT
ATGGGAAACATGAGTGGACTAGCAGCTTGCAGTGTAAGCGATTCAAAACC
GCTACAGTTTCCTTTAGCACAAAGAAGAAAGCGAAGAGTTTTGTTTACGC
AAGCCCAGGTTGGTACTTACATCCTTAGTTTGCTACTTAAAAAAAAAACA
CAAATATTTACCGAATGGAAAGAAGTCAACTTGCTACAGGCAAAAGCAAG
CTTTCTAGACCAT
BO25109.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:52:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scro-RB | 882 | CG17594-PB | 1..879 | 17..895 | 4395 | 100 | Plus |
| scro-RC | 1320 | CG17594-PC | 1..794 | 17..810 | 3970 | 100 | Plus |
| scro-RA | 1407 | CG17594-PA | 1..794 | 17..810 | 3970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scro-RB | 1246 | CG17594-RB | 310..1189 | 16..895 | 4400 | 100 | Plus |
| scro-RC | 1874 | CG17594-RC | 310..1104 | 16..810 | 3975 | 100 | Plus |
| scro-RA | 1961 | CG17594-RA | 310..1104 | 16..810 | 3975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 24725864..24726292 | 16..444 | 2145 | 100 | Plus |
| 3L | 28110227 | 3L | 24734036..24734274 | 657..895 | 1195 | 100 | Plus |
| 3L | 28110227 | 3L | 24728296..24728508 | 444..656 | 1065 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:52:19 has no hits.
BO25109.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-09 11:57:34 Download gff for
BO25109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scro-RB | 127..1001 | 17..891 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:29:21 Download gff for
BO25109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scro-RB | 311..1185 | 17..891 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:37:45 Download gff for
BO25109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scro-RB | 311..1185 | 17..891 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:37:45 Download gff for
BO25109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 24725865..24726292 | 17..444 | 100 | -> | Plus |
| 3L | 24728297..24728508 | 445..656 | 100 | -> | Plus |
| 3L | 24734036..24734270 | 657..891 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:29:21 Download gff for
BO25109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3LHet | 209197..209624 | 17..444 | 100 | -> | Plus |
| 3LHet | 211629..211840 | 445..656 | 100 | -> | Plus |
| 3LHet | 217368..217602 | 657..891 | 100 | | Plus |
BO25109.pep Sequence
Translation from 16 to 913
> BO25109.pep
MSSHGLAYTTRIERKSYRELQINRDQYFVTAPNEEDLVMSLSPKDTLIHT
AISQHHQVDTSTKLNTNETSTQNTVSTAAAAAVAHHHHNLSSIHHLQNLH
SQHQSTLFNSNHSTPFSVTDILSPIEESYRKLELNGNPPSPFRSNSSSSS
INSPGTLTTSTMANPYAMGTLYHSPGVQTYCGPTDNLSLAGHYTDMRNSA
SWYGSTANDPRFAISRLMSSSASGTMSHMGNMSGLAACSVSDSKPLQFPL
AQRRKRRVLFTQAQVGTYILSLLLKKKTQIFTEWKEVNLLQAKASFLDH
BO25109.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scro-PB | 293 | CG17594-PB | 1..293 | 1..293 | 1515 | 100 | Plus |
| scro-PC | 439 | CG17594-PC | 1..265 | 1..265 | 1375 | 100 | Plus |
| scro-PA | 468 | CG17594-PA | 1..265 | 1..265 | 1375 | 100 | Plus |
| scro-PF | 307 | CG17594-PF | 1..104 | 162..265 | 546 | 100 | Plus |
