BO25110.complete Sequence
4084 bp assembled on 2010-08-11
GenBank Submission: KX798579
> BO25110.complete
GAAGTTATCAGTCGACATGCCGACCTTCGGCAGTAAGTTGCTCGCCTGCC
TGCTGCTCAGCTCGGTGATCCTGGTCAGCGGACAGTTCGAGCACTATCTG
GACAGCCTGCGCGCCTCGGAATTGTACGAGTTCGAGGATGGCTCCCTGGG
CAGCATACACCTCTTGCCCAAGGGCGACAGCGAAACGATCGTGCTGCAAC
TGGAGCAGCCCATTCACTTCTACGGGGAGCAGTACGAGCAGCTCTATATC
AACACCAATGGCATCCTCACCTTCAACTCCGAGTTTCCCGAGTACCTGAA
CCAGCCCTTTCCGCTGGAATATGCTTCGATAGCGGCCTTCTACTCGAACG
TGGACACCTCGTTCAGTGATGAGGGCACCTCGATCTCCCTGTTCGAGTCC
AAGGAACAAAGTATTCTCGACAGGGCCTCCAGTTTGGTGCGTTACGCCTT
TAGCAGCCAGTCTGAATTCGAGGCTCGTCAGGTGATCGTGGCCACGTGGC
GCAATGTGGGCTACTTTGACTCCAAGACGGACCGTCTGAACACCTTCCAG
GTGGCACTGATTGCCAACGAGCAGAGCACGTTTGTGCAATTCATCTATCC
GGATGGCGGTCTTAACTGGTTGCAGGGCGAAACAGCTGGACTTGGTCTCC
CCGACATTCGTGCCCAGGCGGGTTTCGTGGCTGAAGATGGACGCTTCTAC
ACCTTGAACGGTTCCGGATCGGAGAATGCCCGTTTCCTGAGCGAAAGCAC
CAACCTGGGTGTTCCCGGAGTCTGGCTGTTCGAAGTGGCTCCCATTGAGA
ACGAGCAGAACGTGAGGTCTCCCGACAATGCCGAGTCCCTCACAGAGTCC
CCCGCTTTGGCTCTGAGTTGCCAGGCCCACGCCCATCAGTGCCACGAGAA
GGCCGAGTGCCACGACAAAGCCGAAGGATATTGCTGTGTCTGCGGATCTG
GATTCTATGGCAATGGAAAGTCCTGCCTGGCTAATGATCAACCTATCCGA
GTGACAGGAACACTGACCGGAGAGCTAAACAAGCAGCCAGTCAGCGAGGA
AGCCAAGCTGCAGTCGTATGTGGTGACTAGCGAAGGCCGCACCTATACCA
CCATCAATCCCCTGACTCCCGAACTGGGCGCCCAGCTCCGACTGGTCCTC
CCACTGCTGACCACCGTGCCCTGGCTGTTCGCCAAGTCGGTGGGTGGTGT
CGCCAATGGATACCAACTAACCGGCGGTGTCTACACCCATGTATCTCGAT
TGCAATTCGATTCTGGGGAGAATCTTCATGTGAATCAGACCTTCGAGGGC
CTCAACTACTGGGACCAGCTATCCGTGAAGATCGAGATCTATGGTGAGGT
TCCGGCGGTGGCAGCGGATGCAGTCCTAATCCTACCCGACTACGTGGAGG
AGTACACTTTCGAAAGACCTGGAGAACTGAAATCTGTCCAGGTGCTCAAT
ATAAATATTACCGAGGAGCAGCGTGTGTTGGGACTTCAGGTGGAGCAAAG
GATTTTGTATCGCAGCTGCCTGCGCGATGACGAGGCAGATCCCAGTGCCA
CCAAGGTGCTGCAGAAGATCTCCAAGGTGGCACTCGACTATGTGGAGCGT
GACCAGGCTCTGCGCATTGGCGCCATGAGCAAGGTGGGCGTGACCCCCGA
ATCGAATGCCTGCAACGATGGTACCGCCGATTGCGTAGAGAACTCCGTCT
GCGTTCCTTACGAGGACACCTACCGGTGCGACTGTTACCACGGTTTCGCT
GCCCAGCTGGACGAGCGTGGAGTGGAGGTCTGCCTGGACATAGACGAGTG
CGCGACGGGCTCCCACGTTTGCGACGAGAATGCCGTTTGCGACAACACGG
AGGGCGGATTCAACTGCTACTGTACCGAGGGATTCGAGGGCAACGGCTAC
CGTTGTCTGTCCAACAGCACCGCTGACAACATTGAATACCCGCCAGCAGT
CGAGGGACAAGCTGAACCCACCTCCGAACCAAGCCCCAATCCCAGCCCGT
ATCCCGATCAGGGACAGGACCAGGAGCGGGAAAGGGAAGATGATCAGTAT
CCCCAACCAAATCCATATCCATATCCTGAGGAGCAGATACCCCAACACCC
CGACGAGTGCTACCGCTGCTCGAAGGACGCTGACTGTTACCAGGGCCGTT
GCACGTGTCACGAAGGCTTCGACGGCGATGGCTACACCTGCACCAATATT
TGCGGACATGGCGAAGTTTGGGAGAACGGACGTTGCGAGCCCCTGTTGCT
CGAGAGGCATGATGTGGATCCGCTTTGCGATGCTCTAGGGGAATGCCGAT
GCCCCTATGGATACGAACTGAGCGAGGATAGCCAGCGCTGCACCTACGTG
CAAGAATTCGATGGAGAAAGGAATGCCGATCTGATTCCCTGCGATGTGGA
TGAAAACTGTCACATCAACGCCACCTGCAATTGGTATGGCCAGGAGCTTC
GCCACATTTGCACCTGCCAGCCAGGATTCAGAGGCGATGGATACAACTGC
GACCCAATCAGCGACGACTCCTGTGCAATTAGACCCGATATCTGTGACGT
TCATGCCGACTGCGTCTATGAGGAGCATTTGGGCAAGTCGGAGTGCCAGT
GCCAGGCGGGCTACACAGGCAACGGCTTCAATTGCCAGTTGGCCGCCGAG
TGCCAGTCCGCAGAGCATTGTGGTGAGAACGCCTTCTGCGACGACGGCGT
CTGCCGCTGCCAAGCGGACTTCGAGCGTGACGTCAGTGACCGCTGTGTTC
CGGCGGGACGTTGCGGCAGCGTCTTCTGCGGCTCAAATGCCATTTGCAAG
TGGGACTCGGCGGAGGGCGTCCAGTACTGCGACTGCCTCGACGGATATCA
GGGAGACGCTCTTACAGGATGCACCAGCAAGCCTCTGTCCTGCCACGTCC
TTAACAACTGCGGCATCCACGCCACCTGCGAACCCACCGAGGATCCGGCC
AATTACGAGTGCCAGTGCATCGCTGGTTTCAAGGGAGATGGATACGTGTG
CATCGAGGAGCAGAACTGTCTGAACAACCCGACCTTGTGCGACATGAATG
CTCAGTGCCGTTCGACCAATTCCGGGCTCGTCTGCGTCTGCAATCAGGGC
TTCTTTGGCAATGGATCCTTGTGCCAGGAGCGTCAGCATCAGGACTCTGA
CTTCCTGATTGTCAGCCAGGGTGTGATGATCGCTCGCGTTCCGCTAAACG
GACGTAATGTCCGTCCCATTTCGGTGGCCCAGATGGCCATTGGTCTGGAC
AAGGATTGCGTGGAGGGCCGCGTCTACTGGGGCGATATTTCGACCAAGAA
GATCGTGAGCACCAAATATGACGGCACTGATCTGCGACCCTTTATCACCA
CTGATATTGAATCTCCCGAGGGTATTGCCATTGATGTCATCTCGCGCCGC
CTTTACTGGGCTGACTCAGCAAAGGATACCATTGAGGTGGCCAGCCTGGA
CGACCCTTCCTTGCGGGCAGTGATCATCAACAAGCAGCTCGTCAATCCCC
GTGGCATTGCCGTGGATCCCTACAGGGAGAAACTGTTCTGGTCGGACTGG
GACCGCGAATCACCCAAGATCGAGATGTCTAACCTGGACGGAACTGGTCG
AGAACTTCTGCTGGGCAAGGATGATGTCACTCTGCCAAACTCCCTGGTGG
TGCTTGAGAATTCCGGAGAGGTGTGCTACGCGGATGCGGGAACCAAGAAG
GTGGAGTGCATCGAACCGCAAAACCGCCAAATCCGCACCATCTCCAACGA
ACTGTCTTATCCCTTCGGCATTACCTTCACGCACGATCAGTTCTACTGGA
CGGACTGGACCACGAAAAAAGTAGAGATCGTTGACAGCTTGGGTGCACGG
CAGACGCCCATTCAGCCGCCCTTCTTTGGCAGCCACAAAATGTACGGCAT
GACCGTGGTGGAGCAGCACTGCCCGCAATACCAGAGTCCCTGCCAGATCA
GCAACGGCGGATGCACGGACTCCCGGCTCTGCCTGGTCAACCGACAGGCT
CCGTCCGGAAAGAGCTGCAAGTGCACCAGCGCCTCCACAGGATGCACCGT
GCTGGCGCCTGGCTACGCAAGCTTTCTAGACCAT
BO25110.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:55:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ndg-RC | 4053 | CG12908-PC | 1..4050 | 17..4066 | 20250 | 100 | Plus |
| Ndg-RA | 4053 | CG12908-PA | 1..4050 | 17..4066 | 20250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ndg-RC | 4816 | CG12908-RC | 384..4433 | 17..4066 | 20250 | 100 | Plus |
| Ndg-RA | 4612 | CG12908-RA | 384..4433 | 17..4066 | 20250 | 100 | Plus |
| CG34222-RA | 584 | CG34222-RA | 399..557 | 3099..2941 | 795 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10316976..10317739 | 728..1491 | 3820 | 100 | Plus |
| 2R | 25286936 | 2R | 10317841..10318467 | 1487..2113 | 3135 | 100 | Plus |
| 2R | 25286936 | 2R | 10316395..10316881 | 242..728 | 2420 | 99.8 | Plus |
| 2R | 25286936 | 2R | 10319268..10319678 | 2531..2941 | 2055 | 100 | Plus |
| 2R | 25286936 | 2R | 10321121..10321406 | 3529..3814 | 1430 | 100 | Plus |
| 2R | 25286936 | 2R | 10318728..10318998 | 2114..2384 | 1355 | 100 | Plus |
| 2R | 25286936 | 2R | 10320572..10320827 | 3098..3353 | 1280 | 100 | Plus |
| 2R | 25286936 | 2R | 10321469..10321721 | 3814..4066 | 1265 | 100 | Plus |
| 2R | 25286936 | 2R | 10314274..10314504 | 17..247 | 1155 | 100 | Plus |
| 2R | 25286936 | 2R | 10320883..10321066 | 3353..3536 | 890 | 98.9 | Plus |
| 2R | 25286936 | 2R | 10319871..10320029 | 2941..3099 | 795 | 100 | Plus |
| 2R | 25286936 | 2R | 10319062..10319207 | 2385..2530 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:55:52 has no hits.
BO25110.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-11 10:36:10 Download gff for
BO25110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndg-RA | 357..4406 | 17..4068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:38 Download gff for
BO25110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndg-RA | 384..4433 | 17..4068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:57 Download gff for
BO25110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndg-RA | 384..4433 | 17..4068 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:57 Download gff for
BO25110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10321121..10321405 | 3529..3813 | 100 | -> | Plus |
| 2R | 10314274..10314504 | 17..247 | 100 | -> | Plus |
| 2R | 10316401..10316880 | 248..727 | 100 | -> | Plus |
| 2R | 10320884..10321058 | 3354..3528 | 100 | -> | Plus |
| 2R | 10321469..10321721 | 3814..4068 | 99 | | Plus |
| 2R | 10316976..10317737 | 728..1489 | 100 | -> | Plus |
| 2R | 10317844..10318467 | 1490..2113 | 100 | -> | Plus |
| 2R | 10318728..10318998 | 2114..2384 | 100 | -> | Plus |
| 2R | 10319062..10319207 | 2385..2530 | 100 | -> | Plus |
| 2R | 10319268..10319677 | 2531..2940 | 100 | -> | Plus |
| 2R | 10319871..10320028 | 2941..3098 | 100 | -> | Plus |
| 2R | 10320573..10320827 | 3099..3353 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:38 Download gff for
BO25110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6201779..6202009 | 17..247 | 100 | -> | Plus |
| arm_2R | 6203906..6204385 | 248..727 | 100 | -> | Plus |
| arm_2R | 6204481..6205242 | 728..1489 | 100 | -> | Plus |
| arm_2R | 6208626..6208910 | 3529..3813 | 100 | -> | Plus |
| arm_2R | 6208974..6209226 | 3814..4068 | 99 | | Plus |
| arm_2R | 6205349..6205972 | 1490..2113 | 100 | -> | Plus |
| arm_2R | 6206233..6206503 | 2114..2384 | 100 | -> | Plus |
| arm_2R | 6206567..6206712 | 2385..2530 | 100 | -> | Plus |
| arm_2R | 6206773..6207182 | 2531..2940 | 100 | -> | Plus |
| arm_2R | 6207376..6207533 | 2941..3098 | 100 | -> | Plus |
| arm_2R | 6208078..6208332 | 3099..3353 | 100 | -> | Plus |
| arm_2R | 6208389..6208563 | 3354..3528 | 100 | -> | Plus |
BO25110.pep Sequence
Translation from 16 to 4084
> BO25110.pep
MPTFGSKLLACLLLSSVILVSGQFEHYLDSLRASELYEFEDGSLGSIHLL
PKGDSETIVLQLEQPIHFYGEQYEQLYINTNGILTFNSEFPEYLNQPFPL
EYASIAAFYSNVDTSFSDEGTSISLFESKEQSILDRASSLVRYAFSSQSE
FEARQVIVATWRNVGYFDSKTDRLNTFQVALIANEQSTFVQFIYPDGGLN
WLQGETAGLGLPDIRAQAGFVAEDGRFYTLNGSGSENARFLSESTNLGVP
GVWLFEVAPIENEQNVRSPDNAESLTESPALALSCQAHAHQCHEKAECHD
KAEGYCCVCGSGFYGNGKSCLANDQPIRVTGTLTGELNKQPVSEEAKLQS
YVVTSEGRTYTTINPLTPELGAQLRLVLPLLTTVPWLFAKSVGGVANGYQ
LTGGVYTHVSRLQFDSGENLHVNQTFEGLNYWDQLSVKIEIYGEVPAVAA
DAVLILPDYVEEYTFERPGELKSVQVLNINITEEQRVLGLQVEQRILYRS
CLRDDEADPSATKVLQKISKVALDYVERDQALRIGAMSKVGVTPESNACN
DGTADCVENSVCVPYEDTYRCDCYHGFAAQLDERGVEVCLDIDECATGSH
VCDENAVCDNTEGGFNCYCTEGFEGNGYRCLSNSTADNIEYPPAVEGQAE
PTSEPSPNPSPYPDQGQDQEREREDDQYPQPNPYPYPEEQIPQHPDECYR
CSKDADCYQGRCTCHEGFDGDGYTCTNICGHGEVWENGRCEPLLLERHDV
DPLCDALGECRCPYGYELSEDSQRCTYVQEFDGERNADLIPCDVDENCHI
NATCNWYGQELRHICTCQPGFRGDGYNCDPISDDSCAIRPDICDVHADCV
YEEHLGKSECQCQAGYTGNGFNCQLAAECQSAEHCGENAFCDDGVCRCQA
DFERDVSDRCVPAGRCGSVFCGSNAICKWDSAEGVQYCDCLDGYQGDALT
GCTSKPLSCHVLNNCGIHATCEPTEDPANYECQCIAGFKGDGYVCIEEQN
CLNNPTLCDMNAQCRSTNSGLVCVCNQGFFGNGSLCQERQHQDSDFLIVS
QGVMIARVPLNGRNVRPISVAQMAIGLDKDCVEGRVYWGDISTKKIVSTK
YDGTDLRPFITTDIESPEGIAIDVISRRLYWADSAKDTIEVASLDDPSLR
AVIINKQLVNPRGIAVDPYREKLFWSDWDRESPKIEMSNLDGTGRELLLG
KDDVTLPNSLVVLENSGEVCYADAGTKKVECIEPQNRQIRTISNELSYPF
GITFTHDQFYWTDWTTKKVEIVDSLGARQTPIQPPFFGSHKMYGMTVVEQ
HCPQYQSPCQISNGGCTDSRLCLVNRQAPSGKSCKCTSASTGCTVLAPGY
ASFLDH
BO25110.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:46:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ndg-PC | 1350 | CG12908-PC | 1..1350 | 1..1350 | 7366 | 100 | Plus |
| Ndg-PA | 1350 | CG12908-PA | 1..1350 | 1..1350 | 7366 | 100 | Plus |
| CG8909-PC | 2008 | CG8909-PC | 269..916 | 675..1338 | 440 | 26.5 | Plus |
| CG8909-PD | 2008 | CG8909-PD | 269..916 | 675..1338 | 440 | 26.5 | Plus |
| CG8909-PB | 2009 | CG8909-PB | 269..916 | 675..1338 | 440 | 26.5 | Plus |
| CG8909-PC | 2008 | CG8909-PC | 1196..1513 | 1014..1336 | 380 | 30.4 | Plus |
| CG8909-PD | 2008 | CG8909-PD | 1196..1513 | 1014..1336 | 380 | 30.4 | Plus |
| CG8909-PC | 2008 | CG8909-PC | 948..1208 | 1067..1337 | 347 | 30.6 | Plus |
| CG8909-PD | 2008 | CG8909-PD | 948..1208 | 1067..1337 | 347 | 30.6 | Plus |
| CG8909-PC | 2008 | CG8909-PC | 1491..1813 | 1001..1323 | 318 | 28.3 | Plus |
| CG8909-PD | 2008 | CG8909-PD | 1491..1813 | 1001..1323 | 318 | 28.3 | Plus |
