BO25115.complete Sequence
2149 bp assembled on 2010-07-15
GenBank Submission: KX797465
> BO25115.complete
GAAGTTATCAGTCGACATGTCCGTGGACAACAGCTTGGGAATTCTAGACT
TATCTTCGGGTAAGGAGAGTGAGAAAACAGCAATGACAGCAGCAAACAAG
GAGAACGATCCGGATTCCCATTTCACGGGTACTATCGTCACAACAGGCGC
CACTGCTCAGCCAGCCACGCCCACTACCTCAAATGCCACCGCCCTACCAG
CCACGCCTACTGTGGCAGCTGGCCAGGATTTGGGTGACGGTGCATGTAGT
AGTAAAAATACGGATTCCAAGTTTCAATCGTACGTAAATGGCAATGGCAA
TGGTGTGTACAAGATCATCAAGACACTCGGTAAGGGAAACTTTGCCAAGG
TCAAGTTGGCGATTCATGTGCCCACCGGTCGTGAAGTGGCCATCAAGGTG
ATCGATAAGACGCAGCTCAATACGAGTGCACGTCAGAAGCTGTACCGCGA
GGTGAAGATCATGAAACTGCTGAACCACCCGAACATCGTGCGCCTCTTCC
AAGTCATCGAGTCTGAGAGGACACTCTACCTGGTGATGGAGTACGCGAGT
CGTGGCGAGCTATTCGACCACCTGGTGAAGAACGGGAGGATGCGGGAGCG
GGATGCCAGGGTGATCTTCCGACAGTTGGTGTCCGCCATTCAGTACTGCC
ACAGCAAGTTTGTGGTTCATCGGGATCTGAAGGCGGAGAACCTGTTGCTG
GACCAGCACATGAACATTAAAATAGCGGACTTTGGCTTCGGCAATACCTT
CGATCCCAACGCCCAGCTTGAAACGTTCTGCGGGAGTCCACCATATGCTG
CCCCTGAACTTTTCATGGGCAGGAAGTACGCCGGCCCGGAGGTGGACGCC
TGGTCGCTGGGAGTGGTGCTGTACACTCTCGTCAGCGGTTCGCTGCCCTT
TGATGGAGGCACCCTAAAGGAGTTGCGGGAAAGAGTCCTGCGGGGCAAGT
ACCGTGTGCCCTACTACATCTCAATGGACTGCGAAAACCTAATGAGAAAG
TTCCTGGTCCTGAATCCCGCCAAGCGCACTTCGCTTTCTGCTGTGATGTC
GGATAAGTGGATAAATCTGGGCCACGATGAATCCGACCGATTGCGTCCGT
TTCGCGAGAAGCCCATGGAGCTGCAGGATGCAGCCCGGTTCGATTTACTG
ATGAGCATGGGCCACAAGCGCCGTGATGTGGAGCAGTCTGTAAAGGGGCA
ACTGTTCGACGACATCTATTGCACATACATGCTCCTGGGCGTGGCCAAGC
CGCGCTCCTCGAACCGCAGTACGAAACCGGAGGCTATACCAACAGTGGAT
TTAACTACTCCAGCTGTCAGTAGCCCGCTTCCTAATATCACCACACCCAC
TGTTACCATAGCTCATGTCACGCTTGCGCTGGACAAGAATCCGCCCATCC
ACTCCTCCTCAGCATCGGGTAGACCCATTGCGCCACGTTTGGCAAATGCA
CCCAATACACCGACTTCAACGCCACCAACGGGACCGCCTGCCAAGCCCAC
AAGACGCACTCCAGCCAGGACACCAGCCCGGAAGGCCACCAACCATACGA
GCGGCCAAGGACGTCCGGAGCCTTCGAGTCTTCCGCACACTCCGCAGTCA
AAGAGAGCCAGTGCCAACATGGATGTGAAGCCCACGCTGCTGAGTGCCCA
GCGACAATTGGCCCAGACCCAAAAGCTGGCCAACACTCCTCCGCGCTTCC
AGTACCCCGTTGCCCAAACTCCGAATCAAGCTCAGGGATCCTCCAGGCGG
CCCACGACCCTGTACGAGAAAGCGGAACCTGCAGTCACTCCACTTCTGGT
GCCCAAGTCGCCGGCCATGGGTGCTCGACTGCTAGAACGGATTCCCGGAG
GTGGAGCAGTGGAAAAGACCTCCGACAAGCCCTTCACCCGACAAAATGTG
GCACGGGCCACTTTTCATTTCGGCCAAGCGCGCAGTGGCAAACGGGGCGG
TGGATCAGGAAATGGCGCAGGCGGAGAGGAGGACAGCTATCAGACGCCAC
CCTTATCCGCGGACGACACCAAGCCCGCCTCGCGGGTAGGTTTCTTCTCC
AAGCTGACCGCACGTTTCGGTCGAAGGGTAATCCACTTGAACGAAAAGGA
TGTCACCGAGCAGCGCAAGAACCTCACCAAAGCAAGCTTTCTAGACCAT
BO25115.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:33:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| KP78a-RB | 2118 | CG6715-PB | 1..2115 | 17..2131 | 10575 | 100 | Plus |
| KP78b-RB | 1815 | CG17216-PB | 148..1136 | 269..1257 | 1645 | 77.8 | Plus |
| KP78b-RA | 1815 | CG17216-PA | 148..1136 | 269..1257 | 1645 | 77.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:33:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| KP78a-RB | 4988 | CG6715-RB | 637..2751 | 17..2131 | 10575 | 100 | Plus |
| KP78b-RB | 4988 | CG17216-RB | 637..2751 | 17..2131 | 10575 | 100 | Plus |
| KP78a-RB | 4988 | CG6715-RB | 3091..4079 | 269..1257 | 1645 | 77.8 | Plus |
| KP78b-RB | 4988 | CG17216-RB | 3091..4079 | 269..1257 | 1645 | 77.8 | Plus |
| KP78b-RA | 2066 | CG17216-RA | 233..1221 | 269..1257 | 1645 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:33:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11348531..11350645 | 2131..17 | 10575 | 100 | Minus |
| 3R | 32079331 | 3R | 11347203..11348191 | 1257..269 | 1645 | 77.8 | Minus |
| 2R | 25286936 | 2R | 19471301..19471467 | 765..931 | 235 | 76 | Plus |
| X | 23542271 | X | 2059589..2059660 | 739..668 | 195 | 84.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:33:26 has no hits.
BO25115.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:42:49 Download gff for
BO25115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KP78a-RA | 1..2115 | 17..2133 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:46 Download gff for
BO25115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KP78b-RB | 637..2751 | 17..2133 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:32 Download gff for
BO25115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KP78b-RB | 637..2751 | 17..2133 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:32 Download gff for
BO25115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11348527..11350645 | 17..2133 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:46 Download gff for
BO25115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7174249..7176367 | 17..2133 | 99 | | Minus |
BO25115.pep Sequence
Translation from 16 to 2149
> BO25115.pep
MSVDNSLGILDLSSGKESEKTAMTAANKENDPDSHFTGTIVTTGATAQPA
TPTTSNATALPATPTVAAGQDLGDGACSSKNTDSKFQSYVNGNGNGVYKI
IKTLGKGNFAKVKLAIHVPTGREVAIKVIDKTQLNTSARQKLYREVKIMK
LLNHPNIVRLFQVIESERTLYLVMEYASRGELFDHLVKNGRMRERDARVI
FRQLVSAIQYCHSKFVVHRDLKAENLLLDQHMNIKIADFGFGNTFDPNAQ
LETFCGSPPYAAPELFMGRKYAGPEVDAWSLGVVLYTLVSGSLPFDGGTL
KELRERVLRGKYRVPYYISMDCENLMRKFLVLNPAKRTSLSAVMSDKWIN
LGHDESDRLRPFREKPMELQDAARFDLLMSMGHKRRDVEQSVKGQLFDDI
YCTYMLLGVAKPRSSNRSTKPEAIPTVDLTTPAVSSPLPNITTPTVTIAH
VTLALDKNPPIHSSSASGRPIAPRLANAPNTPTSTPPTGPPAKPTRRTPA
RTPARKATNHTSGQGRPEPSSLPHTPQSKRASANMDVKPTLLSAQRQLAQ
TQKLANTPPRFQYPVAQTPNQAQGSSRRPTTLYEKAEPAVTPLLVPKSPA
MGARLLERIPGGGAVEKTSDKPFTRQNVARATFHFGQARSGKRGGGSGNG
AGGEEDSYQTPPLSADDTKPASRVGFFSKLTARFGRRVIHLNEKDVTEQR
KNLTKASFLDH
BO25115.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:24:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| KP78a-PB | 705 | CG6715-PB | 1..705 | 1..705 | 3645 | 100 | Plus |
| KP78b-PB | 604 | CG17216-PB | 1..604 | 23..705 | 1760 | 57.2 | Plus |
| KP78b-PA | 604 | CG17216-PA | 1..604 | 23..705 | 1760 | 57.2 | Plus |
| par-1-PL | 833 | CG8201-PL | 178..830 | 18..687 | 1290 | 42.3 | Plus |
| par-1-PW | 832 | CG8201-PW | 178..829 | 18..687 | 1288 | 41.7 | Plus |
