BO25118.complete Sequence
3052 bp assembled on 2010-07-15
GenBank Submission: KX799040
> BO25118.complete
GAAGTTATCAGTCGACATGAGTTTATTAGAGCCTCCTTGTCTAGTCCTGG
AAAAGGCGCTGCTTTTGGGAGCGTTGCTGCTGGCCGTCCTTGCCACACCA
CTTCTGGCCACAAGCGGCTTACGGGTGCCCACATTCCTGCTGGAGCCCGC
ACCCCGGCTGCTCTTCGGCAACGACACGGGTGCCCAGGTCACCTGCACCG
CCCACGGCAGCCCGCCGCCCCTCGTCACGTGGGTCCTTCGCGACGGATCG
CTGGCCACCCAGGTGCCGGGCCTCAGGAAAATATCAGGCAACGGCACCCT
GCACTTCCCCCCATTCCTGGCCCAATATTATCGCACGGATGTTCACGAGG
CCACCTACAGATGCCGGGCGAGCAACGAGGCGGGCACCGTCCTCAGTCGA
AATGTTCAGGTGCATGCAGTGGTGCGTCGTCAATTCCACGTGCACGTGGA
AAACACTGAAGTCTATTTGGGAAATTCGGCGTTGATTAAGTGCGCCATTC
CGGAGTATGTGCGGCCCTATGTGCGCGTGGCCAGTTGGCATCGTGGCGAG
GAGATACTCCTGCCGGATCTGTCGGATGTCGCGGGACGCTATGTGGTCCT
GGCCGCCTCCGGGGATCTCTATGTGCGTTCCGTGCGTTCCGAGGACGGAC
TGATGAAGTTCAGCTGCCTGGTGACAAATACACTGAACGGCGAGCGACAG
CGCAGCGATGCGGTGATGCTGCAGGTCAAAGAGTTAAGCAAGAATCTGGC
TCCTCGGACCACCCAGAAACCGGTGATGGAGATTCACGTGGAGCGTGGAA
ACGACGTTCATCTGCCGTGCAACATCCAGGGCAACCCATTTCCCATATTT
ACCTGGTATCGCGTTTCCGACTCGGCAGCCCTCTATCCCATACCCTCGTC
ACAGCGAGTGATACTTTCGCGCACACTGCTGCTCATCAAAAATGCTGACG
AACGCGATGCGGGCAAGTGGATTTGCCAGGCCTCGAATCAGTTTGGGGAG
CAGCGCATCGAGATCCGACTCAGTGTCAATTCGTATGTGTCCGTGCATAT
ATTGCCGCAAGTTCAAATTGTCAATTCGGGCGGAACGGCGAATTTCAATT
GTACGACAACGGGTTCAGCGATCGATGCCATCGACTGGCTGCACAACGGC
AAACCGCTGCAGGCGAATAATGCACTCACCACCGGCAGGGATAACATACG
CTTCCTGTCGAAGAGCTCGCTCCTGGTCCAAAACGTTGGACGGCGGGACC
GCGGTGTCTATCAGTGCCTCGTGGAAAACCAACGCGCCAGTGCCCAGGCG
ATGGCTGAGTTGAAGTTGGGCGACACTGTGCCGGAATTGATTTACACCTT
CATTGAGCAGAACGTTCGTCCCGGGCCATTAATATCGCTTAAGTGCTCCG
CCAGCGGCTCGCCGCCTCCACAATTCGCCTGGCTGCTGGACTCGCAGCCC
ATCATGGATGTATCGCTGCATCATCGGTTCGCGATCGGGCAATTTGTCGA
TATGTCTGGCGATGTGATAAGCCATTTAAATATCTCGCACGTGCGTCCGG
ACGACGGTGGTCTCTACAAGTGCGTGGCCAGCAACTCGATGGGCAGCGTT
CAGCACTCGGCCAGGTTGAATGTTTACGGACCTCCGTATGTGAGAGCCAT
TGGACCGATTAAAGCCGTTGCGGGCGAGGATATAATTGTGCACTGTCCGT
TCGCCGGTTATCCCGTCGAGCAAATTAGATGGGAGAAGGCGCACCAGGAA
TTGACAACGAGCAACCACTACGAACTGGCTTCGGTGGCTGACGGAGGGCA
GCTGGTCATCAAGAATGTGGAACCGGGTCGGGATCAGGGCATATACACGT
GCATTGTAAGGAGTCGGGCTGGCGAGGAGGCGCGACGGGACATGCAGCTG
AATGTGAACAGTCCGCCCGTCATCGAGCCCTTCAAGTTCCCCAAGAATCT
GCAGGAGGGCGGACGGGCCCAAATCACCTGTGCGGTCTCCTCCGGCGACA
TGCCCATCTACTTCAGTTGGAAGAAGGACGACAGCTCCATCCCAAGCAGT
TTGCAGATTACCGAGAAGAAGGAGGAGTTCTACTCGCTGCTGGTCTTCAA
GGATATCAGTGCGAGGCACAGTGGCAAGTACACCTGCTATGCCAGCAACG
CTGCTGCCAAGGTGAACTACACGGCTGAGCTGCAGGTGCGAGTGGCGCCT
CGCTGGAGATACGAGCCCATGGACACGGCCATTATGCTGGGCAACACAAT
ATCGATAAATTGTGAGGCGGAAGGATATCCGATTCCGACTATTACCTGGT
TCAAAGGGCAGGGCAAAGGGTCAAAGGACTTTAAGCCCCTGAGTATGCGT
AATCACTCACTACTATTAAATCTGGCGACGGACAATGATGAGGGTTATTA
TATGTGCCAGGCAACCAATGAAATCGGAGCTGGTCTCAAAAAGACCATTC
GTATAAATGTGAATGAACCCGCACGATTCGAGCAATCTGCCCGTAACATA
AGTTCCCGTCGCAACGATCCCGTGACCTTGGACTGCCATGCCAAGGGCGA
CGAACCCATCACAATTGGTTGGACGCAGAACAACGGACGCATCGATCTGA
ATAACTTCCGGTTTAGCATAGCGGAGATGAAAACGGAAAAGGGCGTGGAC
TCCCAGCTGACCATCGGTCATTCGGACCGCCACGACTCCGGAGTATACCG
ATGCATAGCGGAGAATCCCTACGGAAGGGCGGAGCAGATTATCTTCCTCG
CTGTTCAGGAGCGACCAGATACGCCCTCCCATCTGGAGATCTTTGAGGTG
GGTTCGCGCACAGTGAAGCTTAGCTGGCGTCGACCCTTCGATGGAAACTC
GCCCGTTCTCAGCTATCTAGTGCAGTACCAGGCTTTAAAGTACCTACAGT
CCCATGGTTCTTTGGCCGCAGCTGGAGGGGATTGGAATGGGCACGTCATC
AACGTCAGCCTGCCGTCGACGAGCATAAGTCGCAGGTATGTGTTCATGCT
AGAAATATTTTTGGCATCCCAGTCTGCTACACTTGCAAGCTTTCTAGACC
AT
BO25118.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:34:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dscam3-RD | 3021 | CG31190-PD | 1..3018 | 17..3034 | 15090 | 100 | Plus |
| Dscam3-RF | 6234 | CG31190-PF | 1..2974 | 17..2990 | 14855 | 100 | Plus |
| Dscam3-RE | 6264 | CG31190-PE | 1..2974 | 17..2990 | 14855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:34:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dscam3-RD | 3712 | CG31190-RD | 459..3480 | 13..3034 | 15095 | 100 | Plus |
| Dscam3-RF | 7745 | CG31190-RF | 459..3436 | 13..2990 | 14860 | 99.9 | Plus |
| Dscam3-RE | 7656 | CG31190-RE | 459..3436 | 13..2990 | 14860 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:34:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17482662..17483231 | 3034..2465 | 2850 | 100 | Minus |
| 3R | 32079331 | 3R | 17489704..17489928 | 1194..970 | 1125 | 100 | Minus |
| 3R | 32079331 | 3R | 17497354..17497575 | 277..56 | 1110 | 100 | Minus |
| 3R | 32079331 | 3R | 17487257..17487462 | 1629..1424 | 1030 | 100 | Minus |
| 3R | 32079331 | 3R | 17492436..17492600 | 581..417 | 825 | 100 | Minus |
| 3R | 32079331 | 3R | 17483295..17483448 | 2465..2312 | 770 | 100 | Minus |
| 3R | 32079331 | 3R | 17484989..17485140 | 1912..1761 | 760 | 100 | Minus |
| 3R | 32079331 | 3R | 17492030..17492180 | 731..581 | 755 | 100 | Minus |
| 3R | 32079331 | 3R | 17484751..17484896 | 2056..1911 | 730 | 100 | Minus |
| 3R | 32079331 | 3R | 17494087..17494232 | 419..274 | 730 | 100 | Minus |
| 3R | 32079331 | 3R | 17484261..17484398 | 2192..2055 | 690 | 100 | Minus |
| 3R | 32079331 | 3R | 17485212..17485345 | 1761..1628 | 670 | 100 | Minus |
| 3R | 32079331 | 3R | 17487990..17488117 | 1322..1195 | 640 | 100 | Minus |
| 3R | 32079331 | 3R | 17483821..17483943 | 2313..2191 | 615 | 100 | Minus |
| 3R | 32079331 | 3R | 17491727..17491849 | 852..730 | 615 | 100 | Minus |
| 3R | 32079331 | 3R | 17490286..17490403 | 970..853 | 590 | 100 | Minus |
| 3R | 32079331 | 3R | 17487790..17487891 | 1423..1322 | 510 | 100 | Minus |
| 3R | 32079331 | 3R | 17498266..17498309 | 56..13 | 205 | 97.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:34:29 has no hits.
BO25118.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:42:52 Download gff for
BO25118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31190-RD | 411..3428 | 17..3036 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:03 Download gff for
BO25118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dscam3-RD | 463..3480 | 17..3036 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:56 Download gff for
BO25118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dscam3-RD | 463..3480 | 17..3036 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:56 Download gff for
BO25118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17492436..17492597 | 420..581 | 100 | <- | Minus |
| 3R | 17494087..17494229 | 277..419 | 100 | <- | Minus |
| 3R | 17497355..17497574 | 57..276 | 100 | <- | Minus |
| 3R | 17498266..17498305 | 17..56 | 100 | | Minus |
| 3R | 17492030..17492179 | 582..731 | 100 | <- | Minus |
| 3R | 17487990..17488117 | 1195..1322 | 100 | <- | Minus |
| 3R | 17489704..17489927 | 971..1194 | 100 | <- | Minus |
| 3R | 17490286..17490403 | 853..970 | 100 | <- | Minus |
| 3R | 17491727..17491847 | 732..852 | 100 | <- | Minus |
| 3R | 17482660..17483230 | 2466..3036 | 99 | <- | Minus |
| 3R | 17483295..17483447 | 2313..2465 | 100 | <- | Minus |
| 3R | 17483822..17483941 | 2193..2312 | 100 | <- | Minus |
| 3R | 17484261..17484396 | 2057..2192 | 100 | <- | Minus |
| 3R | 17484751..17484896 | 1911..2056 | 100 | <- | Minus |
| 3R | 17484991..17485140 | 1761..1910 | 100 | <- | Minus |
| 3R | 17485213..17485344 | 1629..1760 | 100 | <- | Minus |
| 3R | 17487258..17487462 | 1424..1628 | 100 | <- | Minus |
| 3R | 17487790..17487890 | 1323..1423 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:03 Download gff for
BO25118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13317752..13317901 | 582..731 | 100 | <- | Minus |
| arm_3R | 13318158..13318319 | 420..581 | 100 | <- | Minus |
| arm_3R | 13319809..13319951 | 277..419 | 100 | <- | Minus |
| arm_3R | 13323077..13323296 | 57..276 | 100 | <- | Minus |
| arm_3R | 13323988..13324027 | 17..56 | 100 | | Minus |
| arm_3R | 13308382..13308952 | 2466..3036 | 99 | <- | Minus |
| arm_3R | 13309017..13309169 | 2313..2465 | 100 | <- | Minus |
| arm_3R | 13309544..13309663 | 2193..2312 | 100 | <- | Minus |
| arm_3R | 13309983..13310118 | 2057..2192 | 100 | <- | Minus |
| arm_3R | 13310473..13310618 | 1911..2056 | 100 | <- | Minus |
| arm_3R | 13310713..13310862 | 1761..1910 | 100 | <- | Minus |
| arm_3R | 13310935..13311066 | 1629..1760 | 100 | <- | Minus |
| arm_3R | 13312980..13313184 | 1424..1628 | 100 | <- | Minus |
| arm_3R | 13313512..13313612 | 1323..1423 | 100 | <- | Minus |
| arm_3R | 13313712..13313839 | 1195..1322 | 100 | <- | Minus |
| arm_3R | 13315426..13315649 | 971..1194 | 100 | <- | Minus |
| arm_3R | 13316008..13316125 | 853..970 | 100 | <- | Minus |
| arm_3R | 13317449..13317569 | 732..852 | 100 | <- | Minus |
BO25118.pep Sequence
Translation from 16 to 3052
> BO25118.pep
MSLLEPPCLVLEKALLLGALLLAVLATPLLATSGLRVPTFLLEPAPRLLF
GNDTGAQVTCTAHGSPPPLVTWVLRDGSLATQVPGLRKISGNGTLHFPPF
LAQYYRTDVHEATYRCRASNEAGTVLSRNVQVHAVVRRQFHVHVENTEVY
LGNSALIKCAIPEYVRPYVRVASWHRGEEILLPDLSDVAGRYVVLAASGD
LYVRSVRSEDGLMKFSCLVTNTLNGERQRSDAVMLQVKELSKNLAPRTTQ
KPVMEIHVERGNDVHLPCNIQGNPFPIFTWYRVSDSAALYPIPSSQRVIL
SRTLLLIKNADERDAGKWICQASNQFGEQRIEIRLSVNSYVSVHILPQVQ
IVNSGGTANFNCTTTGSAIDAIDWLHNGKPLQANNALTTGRDNIRFLSKS
SLLVQNVGRRDRGVYQCLVENQRASAQAMAELKLGDTVPELIYTFIEQNV
RPGPLISLKCSASGSPPPQFAWLLDSQPIMDVSLHHRFAIGQFVDMSGDV
ISHLNISHVRPDDGGLYKCVASNSMGSVQHSARLNVYGPPYVRAIGPIKA
VAGEDIIVHCPFAGYPVEQIRWEKAHQELTTSNHYELASVADGGQLVIKN
VEPGRDQGIYTCIVRSRAGEEARRDMQLNVNSPPVIEPFKFPKNLQEGGR
AQITCAVSSGDMPIYFSWKKDDSSIPSSLQITEKKEEFYSLLVFKDISAR
HSGKYTCYASNAAAKVNYTAELQVRVAPRWRYEPMDTAIMLGNTISINCE
AEGYPIPTITWFKGQGKGSKDFKPLSMRNHSLLLNLATDNDEGYYMCQAT
NEIGAGLKKTIRINVNEPARFEQSARNISSRRNDPVTLDCHAKGDEPITI
GWTQNNGRIDLNNFRFSIAEMKTEKGVDSQLTIGHSDRHDSGVYRCIAEN
PYGRAEQIIFLAVQERPDTPSHLEIFEVGSRTVKLSWRRPFDGNSPVLSY
LVQYQALKYLQSHGSLAAAGGDWNGHVINVSLPSTSISRRYVFMLEIFLA
SQSATLASFLDH
BO25118.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:24:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dscam3-PD | 1006 | CG31190-PD | 1..1006 | 1..1006 | 5255 | 100 | Plus |
| Dscam3-PF | 2077 | CG31190-PF | 1..991 | 1..991 | 5181 | 99.9 | Plus |
| Dscam3-PE | 2087 | CG31190-PE | 1..991 | 1..991 | 5181 | 99.9 | Plus |
| Dscam3-PC | 2007 | CG31190-PC | 1..1015 | 1..991 | 5146 | 97.5 | Plus |
| Dscam1-PAL | 2016 | CG17800-PAL | 8..986 | 11..992 | 1716 | 36.9 | Plus |
