BO25119.complete Sequence
2437 bp assembled on 2010-12-13
GenBank Submission: KX797620
> BO25119.complete
GAAGTTATCAGTCGACATGGAGCACTTGCGACCGCTGAGCTACGAGGAGA
TGTGCCAAATGGAGCTGCTCCAGGCAGCCGGCGGATCAACGACATCCTCG
GCTCCGCCGGCCATGATGCCTATCATGGTGATACCCACAGCACTGCTGCC
GGCTCCCATCGACGGGGCAGCGGGCGGTGGAGTTCCCGGTGGTGGTGGCA
TTGGTGGTGCGGCCATGGTGGAGCACTATTATCAGCTGCAGCCCACGCAC
CACCTCCTGCCAGCCGAGCCGTTACCAACGACGGCGACAGCAACAGCAAC
AGCAAATTCCGGCGAATTGGCGCTCTTGCAAGGCGAACAACAGATTCCAC
ATCCGAGCATACAGCATCCACAGCAAATGAATATCCTGTGCACCGGAACA
CTGGGACGCCAAAGGATGCCGGCATCGGGTGGTGGCGGGCATAATCCAAA
CATAAATCCCAATCCAAATCCCTCGGTGGCGGCTACTTTGCCGCGCGGTT
TCCAGCCCGCCGCCTTCGTTACGGACGTCGAGTCGGATTTCGAGGGCAGT
GAATGCGGTGCGGGCAGCATGACCACCACCTGCATTCCGCACTTTCGCTT
CGGAGCGTGCGGCCTTCAGTCCCTGCAACAGCACCACCAGCAGCAGGATG
CAGTGGTGGGCTGTGGTTCGCTGGCCTACATGATGGGCTCTGGCACCTTG
GGTCGGGGCCGTCGTCTGGCCGGCGGTCAGGGCAAACCTAAGCGGGTTTC
CTTCAAGGGCGACAACCTGCCACCGCCGTCGCCACCGCCGCCACCAGCCG
TTGAGCTAGACGAGAATGGGCTGCCCATACCGGGTGGACCGGGAGATGCG
GGTAGCTGCTCCTACATGCACTTCGACAACTACATGGACTACCAGACAAC
TGGTTTCGGTGGATTGCCCGACGTCACCGAGCACTCGAACATCCGCCGCA
CACTGTCCCGCCAGAACTCGATCTCGAACAGCGATTCCGGCGGCGAGATA
GCCAGCATCCAGAAGTCAAAGGTGAACTTTGGCAATCCCCTCGCCGGCGG
CGTGGTCGTCGGTGGAGATATAGTTGGTCTGGACGCCAAGTCGCCCACAT
CGCTGGGTTCCACGACTGGAGCTGGCGCCACTGGTAAAGCGAAGGGAAAG
GCGTCAAGGAAGGCGAATGCCGGACCAGATGGCGGACAGAAGGGCAGGAG
AGGATCCTGGCTGGTGGCCATCACCCTGGTCAGCGCCATCTGTCTACTGG
CCATCGCCGCCACTTTGGCCTACCAGCACTTCCTTATGGCGCCCAGCCGC
AATTCCCATGCCCAAAGACTGAGAATCGTTCGTCGAATCCTGCGTGAGGT
GCCGCTGGTCGACGGGCACAACAATTATGCCTGGAATGTTCGCAAGTACG
CCCACAGCAGCCTCGAACTCCATCTCAGCCACGACGTGGACCACAAATCA
CTGTGGTCGCGACCGGCGTGGGCGCAAACGGACATGGAGCGACTCAAGCA
GGGATTAGTCAGCGTCCAAGTGTGGTCAGCATATGTGCCGTGCGAGGCGC
AAGGCTTGGACGCGGTCCAGTTGGCTCTGGAGCAGATCGACATTGTGCGG
CGATTGTCGGACATGTACGCCCGGGAAACGGTGCTGGCCACATCCTCGCA
GGACATTGTCGATGCACATCGCCGGGGACTCCTGGCCTCGCTAATTGGCG
TGGAAGGTGGCCACACGATTGGCTCCTCCCTGGGAGTCCTGCGATCCTTT
TACTCACTGGGCGCACGCTATCTCAGCCTGACCCATCGCTGTGACGTCTC
ATGGGCAGGATCGAGTGCATCGCCGGCGGAACAGGGACTCACGCCCTTTG
GCAAGGCGATTGTGCGTGAGATGAACCGGCTGGGCATGATGATAGATCTG
TCGCACAGCTCGGATGCCACGGCCAGGGATGTACTTCAGGTGACCCGCGC
TCCGGTCATCTTCTCTCATTCCGCCGCCCGCCAGCTGTGCAATTCGACGA
GAAATGTGCCGGATGACATCTTACGCCTGGTGGCCGAGAACGGGGGTCTT
ATCATGCTGAGCTTTGACTCCGAGGATGTGGCATGTGGGCGGCAGGCGCG
CCTCCAGGACGTGATCGAGCACATTAAGTATGTGCGGGCCATTGCCGGCA
TACAGCACATTGGATTGGGAGCCGGATACGATGGCATCGAGCTGCCGCCC
TTGGGACTGGAGGATGTGTCCAAATATCCCGAGCTCTTGGCCGCCCTGCT
GGAGGATCACAACTGGAGCGAGGAGGATGTGGCCATGCTCGCGGGCAGGA
ATTTTCTGCGCATCATGGAAACGGTGGAAACGGTGCGGGATTACTGGAAG
CGAGCGGCCATCCAGCCCATTGAGCAGACGGAGCCGCAGCCCAAGACGCA
GTGCACCTACATGTCCTCGGCAAGCTTTCTAGACCAT
BO25119.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:38:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44837-RE | 2406 | CG44837-PE | 1..2403 | 17..2419 | 12015 | 100 | Plus |
| CG44837-RD | 2601 | CG44837-PD | 1..2403 | 17..2419 | 12015 | 100 | Plus |
| CG44837-RC | 2406 | CG44837-PC | 1..2403 | 17..2419 | 12015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44837-RE | 3746 | CG44837-RE | 283..2688 | 14..2419 | 12030 | 100 | Plus |
| CG44837-RD | 3746 | CG44837-RD | 283..2688 | 14..2419 | 12030 | 100 | Plus |
| CG44837-RC | 3746 | CG44837-RC | 283..2688 | 14..2419 | 12030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11851709..11852604 | 2419..1524 | 4480 | 100 | Minus |
| 3L | 28110227 | 3L | 11862284..11863165 | 895..14 | 4410 | 100 | Minus |
| 3L | 28110227 | 3L | 11854246..11854879 | 1526..893 | 3170 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:38:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2478 | 222..385 | 153 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6903 | 220..378 | 136 | 57.3 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3236..3312 | 228..306 | 128 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6814..6897 | 220..304 | 125 | 62.4 | Plus |
BO25119.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:54:48 Download gff for
BO25119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34420-RC | 286..2688 | 17..2421 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:33:54 Download gff for
BO25119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44837-RC | 286..2688 | 17..2421 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:16 Download gff for
BO25119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44837-RC | 286..2688 | 17..2421 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:16 Download gff for
BO25119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11862284..11863162 | 17..895 | 100 | | Minus |
| 3L | 11851705..11852603 | 1525..2421 | 99 | <- | Minus |
| 3L | 11854248..11854876 | 896..1524 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:33:54 Download gff for
BO25119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11844805..11845703 | 1525..2421 | 99 | <- | Minus |
| arm_3L | 11847348..11847976 | 896..1524 | 100 | <- | Minus |
| arm_3L | 11855384..11856262 | 17..895 | 100 | | Minus |
BO25119.pep Sequence
Translation from 16 to 2437
> BO25119.pep
MEHLRPLSYEEMCQMELLQAAGGSTTSSAPPAMMPIMVIPTALLPAPIDG
AAGGGVPGGGGIGGAAMVEHYYQLQPTHHLLPAEPLPTTATATATANSGE
LALLQGEQQIPHPSIQHPQQMNILCTGTLGRQRMPASGGGGHNPNINPNP
NPSVAATLPRGFQPAAFVTDVESDFEGSECGAGSMTTTCIPHFRFGACGL
QSLQQHHQQQDAVVGCGSLAYMMGSGTLGRGRRLAGGQGKPKRVSFKGDN
LPPPSPPPPPAVELDENGLPIPGGPGDAGSCSYMHFDNYMDYQTTGFGGL
PDVTEHSNIRRTLSRQNSISNSDSGGEIASIQKSKVNFGNPLAGGVVVGG
DIVGLDAKSPTSLGSTTGAGATGKAKGKASRKANAGPDGGQKGRRGSWLV
AITLVSAICLLAIAATLAYQHFLMAPSRNSHAQRLRIVRRILREVPLVDG
HNNYAWNVRKYAHSSLELHLSHDVDHKSLWSRPAWAQTDMERLKQGLVSV
QVWSAYVPCEAQGLDAVQLALEQIDIVRRLSDMYARETVLATSSQDIVDA
HRRGLLASLIGVEGGHTIGSSLGVLRSFYSLGARYLSLTHRCDVSWAGSS
ASPAEQGLTPFGKAIVREMNRLGMMIDLSHSSDATARDVLQVTRAPVIFS
HSAARQLCNSTRNVPDDILRLVAENGGLIMLSFDSEDVACGRQARLQDVI
EHIKYVRAIAGIQHIGLGAGYDGIELPPLGLEDVSKYPELLAALLEDHNW
SEEDVAMLAGRNFLRIMETVETVRDYWKRAAIQPIEQTEPQPKTQCTYMS
SASFLDH
BO25119.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:46:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44837-PE | 801 | CG44837-PE | 1..801 | 1..801 | 4186 | 100 | Plus |
| CG44837-PD | 866 | CG44837-PD | 1..801 | 1..801 | 4186 | 100 | Plus |
| CG44837-PC | 801 | CG44837-PC | 1..801 | 1..801 | 4186 | 100 | Plus |
| CG44837-PB | 964 | CG44837-PB | 443..964 | 280..801 | 2647 | 98.9 | Plus |
| CG6154-PD | 434 | CG6154-PD | 54..417 | 434..790 | 1047 | 54.1 | Plus |
