BO25120.complete Sequence
2947 bp assembled on 2010-07-15
GenBank Submission: KX797708
> BO25120.complete
GAAGTTATCAGTCGACATGGACCAGAATGGCGCATCGGGAAGTCATCCGA
ACAGGCTATCCCAAGGAAGAGGAGCCCATGCGCGCGAACGTGGCGCCACA
GTTTCCGCGGCGGCAAATCGGAGTAACATTATCGACGAAATGGCCAAAAT
ATGCGAAGCCGATCGCCAGACTTTCGCCATCGCTCGACGGACTCGGGGTC
ACGAGCGGCTTGCGGTGGACAACAGCGACTTCGTCGCCGTGGAGGATCTT
ATTTTGTCCTACGCAGAGCCCACGCCCGAGGACCAGGTCGAGATGATCAT
GAGCGACTTTTGCTCGTCTCCAACATACGCAGAGGATGAGGATGAGCCCA
GCCATGAGTCGGAGCCGTGGTTTCGATTTCGCAACAAAAGGATCAGAACC
TACAGCCGGAAGAGGGATCCCAAAAGCCACAAGGCCGTTCAAAACGAGAA
GCGTAGAGGTTCCTCAGGCCTCTCCGTGCAGAGGGATCTCAATACTTCGT
TCACATCTATGGCTTGTGATTTCGATGCTTCATCACAGAAGATACACGAG
GTCCTTTTGAACCTCAGTCAATACTTTTCCGCGACCGCGACAGCTTCCGG
TCCGACTCCTGTCCCATCGCAAATAGATCTGCCAACCGAAGCAAGGCAGG
ATTCTGGTGACGAGTGTTTCAACGCTGAATTGGAGAACTTGAGGGATGAC
CTGTTGCAGAGCGGATTTACATTTGAGGCCTCTTTCTATGAAAATGAGCA
TGAGCAGGAAGGTCCAGGAACTATGGCAGACACTATTTATGGCGATAGCA
TGCAATCGGTTCCCACTACGCGCCTCCGATTGGAAAGTGGAAAACGTAAT
GTTTGGTCTGATGCAGACTCTACATTGAAAAAAGCTGATGTCGAAATTGC
TGAAAATAAGAAACTTTTGATGGGCCAAACGCAAGCAAAAAATGTTGACA
TAGAGGAGAACACAAACTTCATATTAGAAGGCATACCACTAAGTGAATGG
CTAACTCCGATGGAACTGCCCGAGATCTCCAAAGATGTAATCAAACATAT
ACCCGATAAAAAGTTAAAGTTGGAGCCAAGTTCCCAGAAAGAACAAAAAA
GTAGCAAAGATTCAAATGCATCAAAGGTTAGAGGAGCCTCAAAACAATCT
TGTGATATTAACACGAAAAACGAAGGAACTACTATTCTGGATCAGCCTAA
TGCTGCAGAGCAAGAAAACCTATTGAACGACGGCGAGCTTCTTGAGGAGT
TTCTTTTTAATGATTGGCAACCAATGCAGTGCTCTAATGGCCCATCAACC
TCCAAAAACGCAATTCAAGGGCCTAAAGAAAACATCAATTCAATAAATCT
GGACGACAAGGAGCAACCAGAAAAGCAGACTCCTAATAAAAGTCAGACCA
TAAGCAGTCATCAACTTAATGGCATTCGAAAGAAGTCCTTCAAATTTATC
GAGGTTTCGGAAGAAATGAAAATTAAAGGCGAAGAGTTTGTAGACAAAGT
TGTATCCGGCCTATATCACTTTAGTCACAAGTGCAACTTACGTACTGAGG
AATACTCCGATAATCATAGTCAAGTAATGGAATCAACACAGTGTGCGGAA
TTCAAATCAGCCCCAAGCAAGCCCATCGAAATATTGGATGGTAAGGAAAC
CTACAATGCAATAGCTAAAGTTGACGTTGGAGAAATAAATGGAAAATTCA
GTCCTCTCAATAACGATACTATAGCAGAGCCCGAGTTTTGTGGCTTTCGC
ACAGCCTCAAATAAGGCAATTCCGATTTCTGAGAAGATGAAAATCAAAAC
TGCAGAGTTTATGGCTGAGTTTCAATCCAAAGAAACAATTCAACAAAATG
ATTATTTAGTCCATCAGCCAAATGACAAACCGACGTCTGTTGGACTTGAT
ACAGCCTTAAAAAGATCAATAGAGAGTTCAGAGGAAATGCGATCGAAAGC
TTCCAAGTTGGTGGTCGTTGATACTACAATGCGGGAACCGCATCAACCCA
CACTTGACCCAGTTTGCCGTGACTTAAATGAATCACAGTTTTTCGGCTTT
AGAACAGCGTCAAACAAAGCCATTGAGATTACCGAGGCGATGGAGAAGAG
AGGAGCCATGTTTCTGGCCCAGTCTAAAGCTACAGACCAATTAAACGGGT
GGCAGCCAAGCGATTTTCCTGATGTTCTACCCACCTCTCCAAACAATGAG
ATTCATTCAATAAATGTTGAAAATAATAAGGCTGTGAATACTAAAACCGT
ATCTGAGACCGAATTCTTCGGCTTTCGTACCGCTTCAAATAAAGGAATTG
TGATTTCGGAAAATACGAAAATCAAAGTTGCACAGTTCATGAGTGAATTT
CAAGCCGCCGATGCAAGCACTGACTCGAACCAACCAACTGTGATCTCTGA
GGAATCGAGAAATATTGATGCCAAGTTCGTAGATGAAGCGGCGGCAGAAG
ACAGTGCCAACAAGCCAACTTTTTGCAATGTACAAAGTCTAAAAAATACC
TCAGATATTGAGCATTTCAAACACGACTTCTTCGTGGAGCATTCTGCAAA
GGAAGAGCATCCGCTGTGTAGCCAGCCATTGGTGAGGACACCCAGAAGGT
CGCAGGAGATCCACTCCTCACTATCGCAACTTGCCGGCAAATCACCACTG
GACCAGGCCACCAAGAAGTCCGTAATAGCTCGCCGGAACCTCCTGTCACT
AAAAAGAAAGCGAAAGATCATTTTGTCAACTGAAACTTCCACTTCCTGCG
CCTTACCCACTATGGAGCGATTCGCTCCCAAGCCTTCCTCGACAAGTACT
CCGCTGGCCGACAGGGACTTAAATCGCTCCAAGGACTGTACAAAGAATAG
ACAGGATGCGGAGGACATGTCCCCTATTTGCATGCAACCCAAAAAGAGTC
GAAGACTTGGTCTGAGTCGAAGTCGCTATGCAAGCTTTCTAGACCAT
BO25120.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:34:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Brca2-RA | 2916 | CG30169-PA | 1..2913 | 17..2929 | 14565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:34:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Brca2-RA | 3291 | CG30169-RA | 130..3042 | 17..2929 | 14565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:34:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24527236..24529332 | 833..2929 | 10485 | 100 | Plus |
| 2R | 25286936 | 2R | 24526301..24527047 | 17..763 | 3735 | 100 | Plus |
| 2R | 25286936 | 2R | 24527104..24527177 | 760..833 | 370 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 04:34:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 6269..6356 | 1791..1880 | 129 | 64.8 | Plus |
BO25120.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:42:53 Download gff for
BO25120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30169-RA | 102..3014 | 17..2931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:09 Download gff for
BO25120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brca2-RA | 130..3042 | 17..2931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:32:06 Download gff for
BO25120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brca2-RA | 130..3042 | 17..2931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:32:06 Download gff for
BO25120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24526301..24527045 | 17..761 | 100 | -> | Plus |
| 2R | 24527106..24527177 | 762..833 | 100 | -> | Plus |
| 2R | 24527237..24529332 | 834..2931 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:09 Download gff for
BO25120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20414629..20414700 | 762..833 | 100 | -> | Plus |
| arm_2R | 20413824..20414568 | 17..761 | 100 | -> | Plus |
| arm_2R | 20414760..20416855 | 834..2931 | 99 | | Plus |
BO25120.pep Sequence
Translation from 16 to 2947
> BO25120.pep
MDQNGASGSHPNRLSQGRGAHARERGATVSAAANRSNIIDEMAKICEADR
QTFAIARRTRGHERLAVDNSDFVAVEDLILSYAEPTPEDQVEMIMSDFCS
SPTYAEDEDEPSHESEPWFRFRNKRIRTYSRKRDPKSHKAVQNEKRRGSS
GLSVQRDLNTSFTSMACDFDASSQKIHEVLLNLSQYFSATATASGPTPVP
SQIDLPTEARQDSGDECFNAELENLRDDLLQSGFTFEASFYENEHEQEGP
GTMADTIYGDSMQSVPTTRLRLESGKRNVWSDADSTLKKADVEIAENKKL
LMGQTQAKNVDIEENTNFILEGIPLSEWLTPMELPEISKDVIKHIPDKKL
KLEPSSQKEQKSSKDSNASKVRGASKQSCDINTKNEGTTILDQPNAAEQE
NLLNDGELLEEFLFNDWQPMQCSNGPSTSKNAIQGPKENINSINLDDKEQ
PEKQTPNKSQTISSHQLNGIRKKSFKFIEVSEEMKIKGEEFVDKVVSGLY
HFSHKCNLRTEEYSDNHSQVMESTQCAEFKSAPSKPIEILDGKETYNAIA
KVDVGEINGKFSPLNNDTIAEPEFCGFRTASNKAIPISEKMKIKTAEFMA
EFQSKETIQQNDYLVHQPNDKPTSVGLDTALKRSIESSEEMRSKASKLVV
VDTTMREPHQPTLDPVCRDLNESQFFGFRTASNKAIEITEAMEKRGAMFL
AQSKATDQLNGWQPSDFPDVLPTSPNNEIHSINVENNKAVNTKTVSETEF
FGFRTASNKGIVISENTKIKVAQFMSEFQAADASTDSNQPTVISEESRNI
DAKFVDEAAAEDSANKPTFCNVQSLKNTSDIEHFKHDFFVEHSAKEEHPL
CSQPLVRTPRRSQEIHSSLSQLAGKSPLDQATKKSVIARRNLLSLKRKRK
IILSTETSTSCALPTMERFAPKPSSTSTPLADRDLNRSKDCTKNRQDAED
MSPICMQPKKSRRLGLSRSRYASFLDH
BO25120.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:24:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Brca2-PA | 971 | CG30169-PA | 1..971 | 1..971 | 4997 | 100 | Plus |
