BO25128.complete Sequence
3556 bp assembled on 2012-04-24
GenBank Submission: KX798119
> BO25128.complete
GAAGTTATCAGTCGACATGTCGACCTATTTCGGGGTCTATATCCCGACCT
CCAAAGCGGGCTGTTTTGAGGGATCGGTGTCGCAGTGCATCGGCTCCATA
GCCGCGGTGAACATAAAGCCATCCAATCCGGCGTCTGGATCGGCATCAGT
AGCATCGGGATCGCCATCCGGCTCGGCGGCATCCGTGCAAACGGGCAACG
CAGACGATGGCAGTGCTGCCACCAAGTACGAGGATCCCGACTATCCACCG
GACTCGCCACTGTGGCTGATCTTCACGGAGAAATCCAAGGCGCTGGACAT
CCTGCGACACTACAAGGAGGCGCGCCTCCGCGAGTTTCCCAATCTGGAGC
AGGCGGAGAGTTACGTTCAGTTTGGGTTCGAGAGCATCGAGGCGCTCAAG
AGATTTTGCAAGGCAAAGCCCGAAAGCAAGCCCATTCCGATAATCAGCGG
TAGCGGTTACAAGAGCTCACCGACCTCGACGGACAATTCGTGCTCCTCCT
CGCCGACGGGTAACGGCAGTGGCTTCATCATTCCCCTGGGAAGCAATTCC
TCAATGTCGAATTTACTGCTCAGTGACTCACCGACTTCCTCGCCGAGCAG
CTCCAGCAACGTCATTGCCAATGGGCGACAGCAGCAGATGCAGCAGCAAC
AGCAGCAGCAGCCGCAGCAGCCGGATGTGTCCGGAGAAGGCCCTCCTTTC
CGGGCGCCCACCAAACAGGAACTGGTAGAGTTTCGCAAGCAAATCGAAGG
TGGTCACATAGACCGGGTGAAGAGGATTATATGGGAGAATCCACGATTTT
TGATCAGCAGCGGTGATACGCCCACCAGTTTGAAGGAGGGCTGTCGCTAT
AATGCCATGCACATCTGCGCCCAGGTCAATAAGGCCAGGATCGCTCAGTT
GCTGTTAAAGACCATTTCGGATCGGGAGTTCACTCAGCTTTACGTTGGCA
AGAAGGGCAGTGGCAAGATGTGTGCTGCCCTCAACATCAGTCTCCTGGAC
TATTACCTGAACATGCCGGACAAGGGGCGCGGCGAAACACCGCTCCACTT
TGCCGCAAAGAACGGTCATGTGGCCATGGTCGAGGTTCTCGTTTCCTATC
CGGAGTGCAAATCGCTGCGGAATCATGAGGGCAAGGAGCCCAAGGAAATC
ATCTGCCTGCGTAATGCTAATGCTACACATGTGACCATCAAGAAGCTGGA
GCTGCTCTTGTACGATCCGCATTTTGTGCCCGTACTAAGATCCCAGTCAA
ATACACTGCCGCCAAAAGTGGGTCAACCGTTCTCGCCCAAAGATCCACCG
AACCTGCAACACAAAGCGGACGATTACGAGGGCCTCAGCGTGGACCTGGC
AATCAGTGCGCTGGCGGGACCCATGTCCCGCGAAAAGGCCATGAACTTCT
ATCGCCGTTGGAAGACACCACCGCGGGTCAGCAACAATGTGATGTCGCCG
CTGGCTGGTTCACCATTTAGCTCGCCGGTGAAAGTAACCCCAAGCAAGTC
GATCTTTGACCGAAGTGCTGGAAACTCGAGTCCAGTCCACTCAGGACGCA
GAGTGCTCTTTAGTCCATTGGCGGAGGCGACCAGCTCACCAAAACCGACG
AAAAACGTGCCCAATGGCACCAATGAGTGCGAGCACAACAATAATAATGT
GAAGCCAGTGTATCCGTTGGAGTTCCCGGCGACACCCATTCGAAAAATGA
AACCGGATTTATTCATGGCCTATCGCAATAACAATAGCTTTGATTCGCCA
TCTTTGGCCGATGACTCCCAAATCCTGGACATGAGCCTAAGCCGCAGCCT
GAATGCGTCGCTAAATGACAGCTTCCGTGAGCGGCACATCAAGAACACTG
ATATCGAGAAGGGTCTGGAGGTGGTCGGCCGCCAACTGGCACGACAGGAG
CAGTTAGAGTGGCGCGAGTACTGGGATTTTCTCGATTCATTTTTGGACAT
TGGTACGACCGAAGGCCTGGCCCGTCTTGAAGCGTATTTCCTGGAAAAGA
CCGAACAGCAGGCGGATAAATCAGAAACGGTCTGGAACTTTGCCCATCTG
CATCAGTATTTCGATTCGATGGCCGGCGAGCAACAGCAGCAACTCCGAAA
GGATAAAAATGAGGCTGCGGGAGCAACTTCGCCATCCGCCGGAGTCATGA
CTCCGTACACATGCGTAGAGAAGTCGCTGCAAGTGTTCGCCAAGCGCATC
ACTAAAACGTTGATCAACAAAATCGGCAACATGGTGTCCATCAACGACAC
GCTGCTCTGTGAGCTCAAAAGACTGAAATCGCTGATTGTCAGCTTCAAGG
ATGATGCCCGCTTCATTAGCGTGGACTTTAGCAAGGTGCATTCACGTATC
GCCCACCTGGTGGCCAGCTATGTGACCCACTCGCAGGAGGTCAGCGTAGC
CATGCGTCTACAATTGTTGCAGATGCTCCGAAGTTTGCGGCAACTGCTGG
CCGACGAGCGTGGTCGAGAACAGCATTTGGGCTGCGTATGCGCTAGTCTA
TTGCTGATGCTGGAACAGGCGCCGACATCCGCCGTGCATCTACCAGACAC
TCTGAAGACCGAGGAGCTATGTTGCGCCGCCTGGGAGACGGAGCAGTGTT
GCGCCTGTCTGTGGGACGCAAATCTCAGCCGTAAGACCAGTCGTCGAAAG
CGCACTAAGTCGCTGCGGGCAGCTGCTGTTGTTCAGTCTCAGGGTCAGCT
TCAGGATACTTCGGGATCGACAGGGTCGTCAGCCTTGCACGCTTCGCTTG
GTGTGGGATCGACCAGTTTGGGAGCATCGAGGGTCGTGGCGTCCGCTTCG
AAAGATGCTTGGCGCCGTCAACAAAGCGACGACGAGGACTACGACAGCGA
TGAGCAAGTAATCTTTTTCGACTGCACTAATGTTACGCTGCCTTATGGAA
GCAGCAGCGAGGACGAGGAAAACTTCCGTACGCCGCCGCAAAGCTTGTCG
CCAGGTATTTCCATGGATTTGGAGCCGCGTTACGAGTTGTTTATTTTTGG
AAACGAGCCAACCAAGCGAGATTTGGATGTGCTGAATGCCCTTTCCAATG
TCGACATTGATAAGGAAACACTGCCGCATGTCTACGCCTGGAAGACTGCC
ATGGAGAGCTACTCCTGTGCTGAAATGAATCTCTTCCCATCCCCAAGGAA
CGTCAAGGTTCAAAAGCCGGAGCCTTGGTATTCTGGAACCAGTTCTAGCC
ACAACAGCCAACCATTGTTGCATCCCAAGCGTCTGCTTGCCACGCCAAAG
CTGAATGCCGTGGTCAGCGGCAGACGCGGATCCGGACCATTGACGGCGCC
AGTTACACCGCGTCTGGCGCGAACTCCGTCCGCCGCCAGTATTCAAGTTG
CATCCGAGACGAATGGCGAGTCGGTCGGAACTGCTGTGACTCCGGCATCG
CCGATTTTGAGTTTTGCCGCCTTGACGGCAGCGACGCAGTCATTCCAAAC
ACCATTGAACAAGGTGCGCGGCTTGTTCAGCCAATATCGGGATCAACGGT
CCTATAACGAGGGGGACACGCCGCTGGGCAATCGGAACGCAAGCTTTCTA
GACCAT
BO25128.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:37:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0222-RE | 3525 | CG8465-PE | 1..3522 | 17..3538 | 17580 | 99.9 | Plus |
l(1)G0222-RD | 3525 | CG8465-PD | 1..3522 | 17..3538 | 17580 | 99.9 | Plus |
l(1)G0222-RG | 3510 | CG8465-PG | 1..3507 | 17..3538 | 17320 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:37:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0222-RE | 3876 | CG8465-RE | 155..3676 | 17..3538 | 17580 | 99.9 | Plus |
l(1)G0222-RD | 3870 | CG8465-RD | 149..3670 | 17..3538 | 17580 | 99.9 | Plus |
l(1)G0222-RG | 3855 | CG8465-RG | 149..3655 | 17..3538 | 17320 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:37:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17573540..17574540 | 2300..1300 | 5005 | 100 | Minus |
X | 23542271 | X | 17575050..17575768 | 1147..429 | 3595 | 100 | Minus |
X | 23542271 | X | 17572909..17573477 | 2866..2298 | 2815 | 99.6 | Minus |
X | 23542271 | X | 17572054..17572459 | 3538..3133 | 2030 | 100 | Minus |
X | 23542271 | X | 17578513..17578744 | 248..17 | 1160 | 100 | Minus |
X | 23542271 | X | 17575843..17576022 | 428..249 | 900 | 100 | Minus |
X | 23542271 | X | 17574820..17574972 | 1300..1148 | 765 | 100 | Minus |
X | 23542271 | X | 17572710..17572843 | 3000..2867 | 670 | 100 | Minus |
X | 23542271 | X | 17572520..17572652 | 3132..3000 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:37:36 has no hits.
BO25128.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-06 12:07:58 Download gff for
BO25128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0222-RB | 155..3270 | 17..3132 | 99 | == | Plus |
l(1)G0222-RB | 3271..3661 | 3148..3540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 11:43:27 Download gff for
BO25128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0222-RE | 155..3676 | 17..3540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:17 Download gff for
BO25128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0222-RD | 149..3670 | 17..3540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:53:44 Download gff for
BO25128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0222-RD | 149..3670 | 17..3540 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:53:44 Download gff for
BO25128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17572051..17572459 | 3133..3540 | 99 | <- | Minus |
X | 17572520..17572651 | 3001..3132 | 100 | <- | Minus |
X | 17572710..17572843 | 2867..3000 | 100 | <- | Minus |
X | 17572909..17573475 | 2300..2866 | 99 | <- | Minus |
X | 17573541..17574539 | 1301..2299 | 100 | <- | Minus |
X | 17574820..17574972 | 1148..1300 | 100 | <- | Minus |
X | 17575050..17575768 | 429..1147 | 100 | <- | Minus |
X | 17575843..17576022 | 249..428 | 100 | <- | Minus |
X | 17578513..17578744 | 17..248 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:17 Download gff for
BO25128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17466084..17466492 | 3133..3540 | 99 | <- | Minus |
arm_X | 17466553..17466684 | 3001..3132 | 100 | <- | Minus |
arm_X | 17466743..17466876 | 2867..3000 | 100 | <- | Minus |
arm_X | 17466942..17467508 | 2300..2866 | 99 | <- | Minus |
arm_X | 17467574..17468572 | 1301..2299 | 100 | <- | Minus |
arm_X | 17468853..17469005 | 1148..1300 | 100 | <- | Minus |
arm_X | 17469083..17469801 | 429..1147 | 100 | <- | Minus |
arm_X | 17469876..17470055 | 249..428 | 100 | <- | Minus |
arm_X | 17472546..17472777 | 17..248 | 100 | | Minus |
BO25128.pep Sequence
Translation from 16 to 3556
> BO25128.pep
MSTYFGVYIPTSKAGCFEGSVSQCIGSIAAVNIKPSNPASGSASVASGSP
SGSAASVQTGNADDGSAATKYEDPDYPPDSPLWLIFTEKSKALDILRHYK
EARLREFPNLEQAESYVQFGFESIEALKRFCKAKPESKPIPIISGSGYKS
SPTSTDNSCSSSPTGNGSGFIIPLGSNSSMSNLLLSDSPTSSPSSSSNVI
ANGRQQQMQQQQQQQPQQPDVSGEGPPFRAPTKQELVEFRKQIEGGHIDR
VKRIIWENPRFLISSGDTPTSLKEGCRYNAMHICAQVNKARIAQLLLKTI
SDREFTQLYVGKKGSGKMCAALNISLLDYYLNMPDKGRGETPLHFAAKNG
HVAMVEVLVSYPECKSLRNHEGKEPKEIICLRNANATHVTIKKLELLLYD
PHFVPVLRSQSNTLPPKVGQPFSPKDPPNLQHKADDYEGLSVDLAISALA
GPMSREKAMNFYRRWKTPPRVSNNVMSPLAGSPFSSPVKVTPSKSIFDRS
AGNSSPVHSGRRVLFSPLAEATSSPKPTKNVPNGTNECEHNNNNVKPVYP
LEFPATPIRKMKPDLFMAYRNNNSFDSPSLADDSQILDMSLSRSLNASLN
DSFRERHIKNTDIEKGLEVVGRQLARQEQLEWREYWDFLDSFLDIGTTEG
LARLEAYFLEKTEQQADKSETVWNFAHLHQYFDSMAGEQQQQLRKDKNEA
AGATSPSAGVMTPYTCVEKSLQVFAKRITKTLINKIGNMVSINDTLLCEL
KRLKSLIVSFKDDARFISVDFSKVHSRIAHLVASYVTHSQEVSVAMRLQL
LQMLRSLRQLLADERGREQHLGCVCASLLLMLEQAPTSAVHLPDTLKTEE
LCCAAWETEQCCACLWDANLSRKTSRRKRTKSLRAAAVVQSQGQLQDTSG
STGSSALHASLGVGSTSLGASRVVASASKDAWRRQQSDDEDYDSDEQVIF
FDCTNVTLPYGSSSEDEENFRTPPQSLSPGISMDLEPRYELFIFGNEPTK
RDLDVLNALSNVDIDKETLPHVYAWKTAMESYSCAEMNLFPSPRNVKVQK
PEPWYSGTSSSHNSQPLLHPKRLLATPKLNAVVSGRRGSGPLTAPVTPRL
ARTPSAASIQVASETNGESVGTAVTPASPILSFAALTAATQSFQTPLNKV
RGLFSQYRDQRSYNEGDTPLGNRNASFLDH
BO25128.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:06:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0222-PE | 1174 | CG8465-PE | 1..1174 | 1..1174 | 6081 | 100 | Plus |
l(1)G0222-PD | 1174 | CG8465-PD | 1..1174 | 1..1174 | 6081 | 100 | Plus |
l(1)G0222-PG | 1169 | CG8465-PG | 1..1169 | 1..1174 | 6036 | 99.6 | Plus |
l(1)G0222-PF | 1110 | CG8465-PF | 11..1110 | 75..1174 | 5679 | 99.7 | Plus |