BO25139.complete Sequence
3535 bp assembled on 2010-08-11
GenBank Submission: KX797598
> BO25139.complete
GAAGTTATCAGTCGACATGTCCCTGGCCGACATGGGCACAGCCTCTCGAT
CCGCCGGCGGAGAAGGTGGTAGACACTATGATCTAGCCACGGGCGGAGCT
GGAAGTGGGGGTCATCCAGTGGGCGGCGGTCTGCCCGGAGGCCGCATGAC
GCACTCCCTCAGCACTCCTTCCGGGGTGGATGGCACGCCCTCCACACCCC
GACATCGCGGCGGCAAAAAGCTGACTGTTCGCATCCAGATGCTGGACGAC
TCGATCACCATGTTCCAAGTACAGGCTAAAGCACTGGGCCGCGTGCTGTT
TGAACAGGTATGCCGTCAGCTGAATTTACTGGAGGCCGACTACTTCGGCT
TGGAGTACCAGGAAGTCTCCACACATACCAAATACTGGCTGGATCTGGAG
AAGCCAATGAACCGCCAGGTGGGCCTCTCTCTTATCGATCCAGTGCTGCG
CTTCTGCATCAAGTTCTATACACCCGATCCAGCGCAATTGGAAGAGGAGT
ACACCAGGTATTTGTTCTGCTTGCAAATCAAACGAGACCTGGCCACAGGC
AGTCTGCAGTGCAACGATAACACGGCGGCCTTAATGGCAAGCTACATTGT
ACAGGCGTCATGCGGCGACTTCGTTCCGGAGGATTATCCCGACCATACTT
ATCTGTCCTCGTATCGCTTTGTGCCCAACCAGGACGCCACCATGCAGCGA
AAGATTATGGAGAACCACAAAAAGCATGTTGGTCAATCCCCGGCGGAGGC
GGACCTTAACCTCTTGGAGACGGCTCGGAGGTGTGAGCTGTATGGCATGA
AAATGCATCCGGCGAAGGATGTGGAAGGGGTGCCGCTTAATCTGGCTGTG
GCCCACATGGGCATCACAGTCTTCCAGAACATCACGCGGATCAACACCTT
CTCGTGGGCTAAGATACGCAAGATTTCTTTCAAGCGCAAGCGATTCCTGG
TCAAACTGCATCCAGAGGGATATGGATATTACAAGGATACCGTGGAGTTC
TTCTTCGAGGGTCGCAACGAGTGCAAAAACTTCTGGAAAAAATGCGTCGA
AAATCACGGATTCTTCCGATGCACTGCCGTACAAAATACGCCCAGGCGCA
AAACTCGCGTTCTCTCGCGGGGTAGTTCATTCCGCTATAGCGGAAAAACC
CAGAAGCAGATTATCGAGTTCGTTCGCGAAAATTATGTGAAGCGCCAAAA
CTTCCAAAGGTCTCAGTCATTCCGGCAAGGGCCACTGAATGCTAGTAGCC
GAAGTCAATCGCATACGTATGTGAATTCCAGCATTTCAGCCAATCCCCTT
CTCCCAATTGACACTGCGGCATGGGACTATCGCAATCAATGCAGCGACTC
GATGACCCCTTCTCTGACGAAGAAGGCAGCGGATACCTTGGATCGCCGAC
GCGACAATCCTATCGGCCACATGCGTTCTCAAGTCACAGCAGCCCAGGTG
GAGATCTATCAGACGAAGAACTATGCAGCGGACTCGCCAACCTCCCAGGA
GGAAGCGGAATGCTCGGCGGCGGGGGCGGAACGGCAACACCACTCGGCAG
TGGCTATGGACAAACTGAATTCGAACCGCTCACTTTCGCCCCAGGGACCG
CAGTCGTGGACTTCGCCCAGTCACAGCAGCCACCACCAACAGCGCGGTCC
CGATCCGGCTCGTGTGCATCCAGGCGATCACAATACAGATGGGTACTATG
GAATAAATGGAAATATGTCGTTGGACAGGCGCGGTGAAATCACCACTCCA
CCAACGCGGTACGACCTCACCTTAGGATCGGATAAGTCTTCGTCACTATC
CCGATCTGAGGCAGGAACATATGACGTAATACAGGCAGAAATCCAGCACG
CTAAGAGACAGGAGCTAGCCACAGGCGTTGCCACCGCCTCGCACCAGAAT
GGGAACGGAAACGGAAATGGGCATACCCTGAGCACACAACACGATATTGA
GGCAGAAGTGAAAAAGCGGAAATGGCCCACCGAGCCCAGCTACTTTTTGG
CCAAGGAGCTGTTGATGACGGAACGTACGTACAAGAAGGATCTAGATGTG
CTGAACACAACCTTCCGACAGGTGCTGAGTCTCGGGGATGTGGAGCAGCT
GCAGCCGCTGTTCGAGCTGCTCGACTCCCTGGCCCAGCACCACAATCTCT
TCCTGCGCGACATCGAACACCGCATGGTGCAGTGGGAGGGAAGAGGAGGC
CACGAAGCCCACCGCATCGGAGACGTCATGATGAAGCACATGGCCGCTCT
GCCCATCTACGATGAGTACGTGCAGACGCACCTGGACATCTTGCACTGTA
TGAACGACATGTACGAAGGCGATGAACGCTTCCGTCAGGTGTACAAGGAG
TTTGAGCAGCAAAAGGTTTGCTATCTACCCATCGGCGAACTTCTACTGAA
GCCCCTCAACCGCCTGTTGCACTACCAACTGATCTTAGAGCGGCTCTGCG
ACTACTATGGGGAGGAGCATATCGACTATGCCGATGCTATGGCCGTGCAC
CACTTGCTCGTTCGCAGCACCAAGGGTATTAGGTCCCAGCTTCCCGACTC
TGCAAACTTTGTGGAGCTGTGTGAACTGCAACGCGACATCAACTTCGAGC
AGTTGGTTCAGCCCCATCGCCGCCTCATCCGCCAGGGATGCCTTCTGAAG
CACTCCAAGCGCGGTCTGCAGCAGAGGATGTTCTTCTTGTTCTCCGACCT
GCTGCTCTACGGTTCGAAGTCCCCGCTGGACCAGAGCTTCCGCATTTTAG
GCCACGTTCCTGTGCGTTCATTACTCACCGAGAACGCCGAGCACAACACC
TTCTCCATCTTCGGCGGACAGTGTGCCATCACAGTGAGTGCGGGCACCAC
CGCTGAAAAGACCCTCTGGCTGGCCGAGCTCTCCAAGGCGGCCGCGGATA
TTAAAAACCGACCGCCCAACATGCAACTCCAGCTAACGACGCTCAAGAAC
TGCAGCTCCTCGGAGGAGGGCCTGGACCTATTCGGTCTGAGCAACGGGAA
CAACAGCAGCCTGAACAGCAGTGTGAACGGCGGCGGTCCGCTGACTACGC
AGCAGCAGAAGTTGCAGCTGCAGCAACAGCAGCAAAACAGGACGCAGCCA
TCCCGAAGCAATACGGCTCTGCACGTCTGTTGGCATCGTGGCGCCACCGT
AGGACTGGGCGATCACCTGATAGCCGCCGAGCACCAGTTGTCCGGTTATC
TGCTGCGAAAGTTCAAGAATAGCTCCGGCTGGCAGAAGCTCTGGGTGGTG
TTCACGTCCTTTTGTCTGTACTTTTACAAGAGCTACCAGGACGAGTTCGC
ACTGGCTAGTCTGCCGCTATTGGGTTACACGGTGGGTCCTCCTGGTCACC
AAGATGCCGTTCAGAAGGAGTTCGTCTTCAAGCTTTCCTTTAAGAACCAC
GTCTACTTCTTCCGCGCGGAAAGTGCGCACACCTACAACAGATGGCTGGA
GGTACTGCGCAGCACAACCCAAACCCAGGACTTCAAGAACGTACACAGCC
ATGCTGTGTTGGGCAACGCAAGCTTTCTAGACCAT
BO25139.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:18:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdep-RE | 3504 | CG44193-PE | 1..3501 | 17..3517 | 17490 | 100 | Plus |
| Cdep-RF | 3492 | CG44193-PF | 1..3489 | 17..3517 | 17275 | 99.6 | Plus |
| Cdep-RG | 12822 | CG44193-PG | 1..1672 | 17..1688 | 8345 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:18:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdep-RE | 5038 | CG44193-RE | 1012..4512 | 17..3517 | 17490 | 100 | Plus |
| Cdep-RF | 5026 | CG44193-RF | 1012..4500 | 17..3517 | 17275 | 99.6 | Plus |
| Cdep-RG | 15976 | CG44193-RG | 1012..2683 | 17..1688 | 8345 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:18:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4940673..4941941 | 1687..2955 | 6345 | 100 | Plus |
| 3R | 32079331 | 3R | 4942302..4942788 | 2955..3441 | 2435 | 100 | Plus |
| 3R | 32079331 | 3R | 4917874..4918132 | 17..275 | 1295 | 100 | Plus |
| 3R | 32079331 | 3R | 4926076..4926331 | 1433..1688 | 1280 | 100 | Plus |
| 3R | 32079331 | 3R | 4923234..4923478 | 730..974 | 1210 | 99.6 | Plus |
| 3R | 32079331 | 3R | 4922590..4922826 | 273..509 | 1185 | 100 | Plus |
| 3R | 32079331 | 3R | 4922945..4923168 | 506..729 | 1120 | 100 | Plus |
| 3R | 32079331 | 3R | 4923532..4923696 | 974..1138 | 810 | 99.4 | Plus |
| 3R | 32079331 | 3R | 4925893..4926011 | 1316..1434 | 595 | 100 | Plus |
| 3R | 32079331 | 3R | 4925544..4925652 | 1208..1316 | 545 | 100 | Plus |
| 3R | 32079331 | 3R | 4944973..4945050 | 3440..3517 | 390 | 100 | Plus |
| 3R | 32079331 | 3R | 4923753..4923830 | 1134..1211 | 390 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 01:18:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6879 | 2990..3084 | 183 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6852 | 2990..3084 | 177 | 68.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6708..6825 | 2978..3092 | 168 | 65 | Plus |
BO25139.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-11 10:21:45 Download gff for
BO25139.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdep-RE | 1012..4512 | 17..3519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:39 Download gff for
BO25139.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdep-RE | 1012..4512 | 17..3519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:56 Download gff for
BO25139.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdep-RE | 1012..4512 | 17..3519 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:56 Download gff for
BO25139.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4940675..4941940 | 1689..2954 | 100 | -> | Plus |
| 3R | 4942302..4942788 | 2955..3441 | 100 | -> | Plus |
| 3R | 4944975..4945050 | 3442..3519 | 97 | | Plus |
| 3R | 4923234..4923477 | 730..973 | 99 | -> | Plus |
| 3R | 4923532..4923692 | 974..1134 | 100 | -> | Plus |
| 3R | 4923754..4923828 | 1135..1209 | 100 | -> | Plus |
| 3R | 4925546..4925652 | 1210..1316 | 100 | -> | Plus |
| 3R | 4925894..4926009 | 1317..1432 | 100 | -> | Plus |
| 3R | 4926076..4926331 | 1433..1688 | 100 | -> | Plus |
| 3R | 4917874..4918131 | 17..274 | 100 | -> | Plus |
| 3R | 4922592..4922824 | 275..507 | 100 | -> | Plus |
| 3R | 4922947..4923168 | 508..729 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:39 Download gff for
BO25139.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 749476..749550 | 1135..1209 | 100 | -> | Plus |
| arm_3R | 751268..751374 | 1210..1316 | 100 | -> | Plus |
| arm_3R | 751616..751731 | 1317..1432 | 100 | -> | Plus |
| arm_3R | 751798..752053 | 1433..1688 | 100 | -> | Plus |
| arm_3R | 743596..743853 | 17..274 | 100 | -> | Plus |
| arm_3R | 748314..748546 | 275..507 | 100 | -> | Plus |
| arm_3R | 748669..748890 | 508..729 | 100 | -> | Plus |
| arm_3R | 748956..749199 | 730..973 | 99 | -> | Plus |
| arm_3R | 749254..749414 | 974..1134 | 100 | -> | Plus |
| arm_3R | 766397..767662 | 1689..2954 | 100 | -> | Plus |
| arm_3R | 768024..768510 | 2955..3441 | 100 | -> | Plus |
| arm_3R | 770697..770772 | 3442..3519 | 97 | | Plus |
BO25139.pep Sequence
Translation from 16 to 3535
> BO25139.pep
MSLADMGTASRSAGGEGGRHYDLATGGAGSGGHPVGGGLPGGRMTHSLST
PSGVDGTPSTPRHRGGKKLTVRIQMLDDSITMFQVQAKALGRVLFEQVCR
QLNLLEADYFGLEYQEVSTHTKYWLDLEKPMNRQVGLSLIDPVLRFCIKF
YTPDPAQLEEEYTRYLFCLQIKRDLATGSLQCNDNTAALMASYIVQASCG
DFVPEDYPDHTYLSSYRFVPNQDATMQRKIMENHKKHVGQSPAEADLNLL
ETARRCELYGMKMHPAKDVEGVPLNLAVAHMGITVFQNITRINTFSWAKI
RKISFKRKRFLVKLHPEGYGYYKDTVEFFFEGRNECKNFWKKCVENHGFF
RCTAVQNTPRRKTRVLSRGSSFRYSGKTQKQIIEFVRENYVKRQNFQRSQ
SFRQGPLNASSRSQSHTYVNSSISANPLLPIDTAAWDYRNQCSDSMTPSL
TKKAADTLDRRRDNPIGHMRSQVTAAQVEIYQTKNYAADSPTSQEEAECS
AAGAERQHHSAVAMDKLNSNRSLSPQGPQSWTSPSHSSHHQQRGPDPARV
HPGDHNTDGYYGINGNMSLDRRGEITTPPTRYDLTLGSDKSSSLSRSEAG
TYDVIQAEIQHAKRQELATGVATASHQNGNGNGNGHTLSTQHDIEAEVKK
RKWPTEPSYFLAKELLMTERTYKKDLDVLNTTFRQVLSLGDVEQLQPLFE
LLDSLAQHHNLFLRDIEHRMVQWEGRGGHEAHRIGDVMMKHMAALPIYDE
YVQTHLDILHCMNDMYEGDERFRQVYKEFEQQKVCYLPIGELLLKPLNRL
LHYQLILERLCDYYGEEHIDYADAMAVHHLLVRSTKGIRSQLPDSANFVE
LCELQRDINFEQLVQPHRRLIRQGCLLKHSKRGLQQRMFFLFSDLLLYGS
KSPLDQSFRILGHVPVRSLLTENAEHNTFSIFGGQCAITVSAGTTAEKTL
WLAELSKAAADIKNRPPNMQLQLTTLKNCSSSEEGLDLFGLSNGNNSSLN
SSVNGGGPLTTQQQKLQLQQQQQNRTQPSRSNTALHVCWHRGATVGLGDH
LIAAEHQLSGYLLRKFKNSSGWQKLWVVFTSFCLYFYKSYQDEFALASLP
LLGYTVGPPGHQDAVQKEFVFKLSFKNHVYFFRAESAHTYNRWLEVLRST
TQTQDFKNVHSHAVLGNASFLDH
BO25139.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:44:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdep-PE | 1167 | CG44193-PE | 1..1167 | 1..1167 | 6179 | 100 | Plus |
| Cdep-PF | 1163 | CG44193-PF | 1..1163 | 1..1167 | 6139 | 99.7 | Plus |
| Cdep-PG | 4273 | CG44193-PG | 1..557 | 1..557 | 2962 | 100 | Plus |
| Cdep-PC | 404 | CG44193-PC | 1..398 | 1..398 | 2120 | 100 | Plus |
| cora-PE | 699 | CG11949-PE | 21..340 | 58..381 | 691 | 41.4 | Plus |
