Clone BO25141 Report

Search the DGRC for BO25141

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:251
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCSN8-RB
Protein status:BO25141.pep: Imported from assembly
Sequenced Size:580

Clone Sequence Records

BO25141.complete Sequence

580 bp assembled on 2010-06-09

GenBank Submission: KX794983

> BO25141.complete
GAAGTTATCAGTCGACATGCATTTAAATAAATATAGTGAAGTAGTGGAGC
GGCTTGAGAACGAGGAATTTGAGCAAGTCGAACTGGGAGCTGAAGTCTAC
CAGCAATTACTTGCTATTTACCTCTATCAAAACAAACTGGCTGATGCCAA
GTTGTTGTGGATGAGAGTTCCAGCTAACCTAAGGGATGACAAGGAACTGA
TCCAGCTGAACCTGCTCAATATTGCCCTGCAGAACAATAACTATGCCGAT
TTCTTCAAACACATCAAGTATGAGTGGTCGGAAAGAGTAAAGTCACCTGT
GGAGGATCTTCTAAATAAGCAACGCGAAGAGCTGTTCAAACTAATGGGCA
GCGCATATATGTCCATTTACCAGCACAATCTACTGGAATTGTCACTAATG
TCGGAGGACGAACTGAAACACGCCTGTGCGGCCTTAAATTGGACTGAGGA
ACTGGACGGTGACCGGGTAATCCTGAAGCCCAAGGTTCAGGAAGCACCGC
CAGCTCGTGGAAACGATGACCAGTTGCTTAAGTTGACCGAGTTTGTAACC
TTCCTAGAGAATGCAAGCTTTCTAGACCAT

BO25141.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
CSN8-RB 549 CG42522-PB 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
CSN8-RB 641 CG13383-RB 69..614 17..562 2730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8365389..8365636 315..562 1240 100 Plus
2L 23513712 2L 8365153..8365328 139..314 880 100 Plus
2L 23513712 2L 8365038..8365105 72..139 340 100 Plus
2L 23513712 2L 8364923..8364979 17..73 285 100 Plus
Blast to na_te.dros performed 2014-11-28 02:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
F-element 4708 F-element F 4708bp 2581..2611 116..146 119 87.1 Plus

BO25141.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-09 11:57:26 Download gff for BO25141.complete
Subject Subject Range Query Range Percent Splice Strand
CSN8-RB 57..602 17..564 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:29:13 Download gff for BO25141.complete
Subject Subject Range Query Range Percent Splice Strand
CSN8-RB 69..614 17..564 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:37:36 Download gff for BO25141.complete
Subject Subject Range Query Range Percent Splice Strand
CSN8-RB 69..614 17..564 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:37:36 Download gff for BO25141.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8364923..8364979 17..73 100 -> Plus
2L 8365040..8365104 74..138 100 -> Plus
2L 8365153..8365328 139..314 100 -> Plus
2L 8365389..8365636 315..564 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:29:13 Download gff for BO25141.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8364923..8364979 17..73 100 -> Plus
arm_2L 8365040..8365104 74..138 100 -> Plus
arm_2L 8365153..8365328 139..314 100 -> Plus
arm_2L 8365389..8365636 315..564 99   Plus

BO25141.pep Sequence

Translation from 16 to 580

> BO25141.pep
MHLNKYSEVVERLENEEFEQVELGAEVYQQLLAIYLYQNKLADAKLLWMR
VPANLRDDKELIQLNLLNIALQNNNYADFFKHIKYEWSERVKSPVEDLLN
KQREELFKLMGSAYMSIYQHNLLELSLMSEDELKHACAALNWTEELDGDR
VILKPKVQEAPPARGNDDQLLKLTEFVTFLENASFLDH

BO25141.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
CSN8-PB 182 CG13383-PB 1..182 1..182 937 100 Plus