BO25143.complete Sequence
2026 bp assembled on 2010-07-15
GenBank Submission: KX798651
> BO25143.complete
GAAGTTATCAGTCGACATGGATTACAAATTCATTGTTTTCAACGCAGCGA
GGGACAACAATTTGGCGCAGTTGAAGGCCACCCTTTACAACAAAAGCTCC
GTCGAAGTGGGCAGCCTGATATCGGCGAAAGTGAACGGAGCCACCCCGCT
GGTCATCTCCTGCCGCAATGGCCACTACGACATTGTAGAATACCTATTGA
CAAAATGTCGGGCCAACGTGGAGCAGGTGGGATCGGTCAGTTTCGACGGG
GAACCAATAGAGGATGCCCCACCGCTGTGGTGCGCTGCGGCCGCTGGCCA
CCTGGGCATCGTAAAGATGCTCGTCCGCCGAGGGGCGAATGTGAACAGTA
CCACCAGGACGAATTCCACACCGCTGCGAGCTGCCTGCTTCGATGGACAC
TACGAGATCGTCAAGTACCTGGTACACCATGGAGCAGACTTTGAGGTGGC
GAACCGTCACGGCCACACCTGCTTGATGATCGCCTGCTACAAGGGTCACT
TCCGCATCGCCCAGTATCTGCTCTCCCTGAACGCCGATGTGAACCGCTGC
AGCGTTAAGGGCAACACGGCACTGCACGACTGCGCCGAGTCGGGCTCCTT
GCAGATCCTCCAGTTGCTGCTCAAGCACGGCGCCACCATGGACGTGGACT
ATTACGGAATGACTCCGCTGCTGGCGGCCAGTGTCACCGGTCACATGCCC
ATCGTGGAGCACTTAATCACTTTGCCCTGTGTGAGCAGGGAATCGAGGAT
TCATGCTTTGGAACTGCTAGGTGCCACGTATGTGGACCGAAAGCGGGACA
TGGCAGCGGCACTAAACCTGTGGCGTCGAGCGCTCGAGGAGCGTGCCGTG
GAGCCACCGCTGGAGAAAAAGGTTCAGGAACCAGTGCCGGCATATGAGAT
GGTTCGCGAGGTAACCAGCGTGGAGGAGCTGGAGGAGATGGTTTTGGATC
CTGATGAGATGCGAATGCAGGCTCTGGTCATTCGGCAGCGCATTCTCGGA
CCCACCCATCCGGACACCAGCTACTACATTCGATTTAGGGGCGCTCACTA
TGCGGACGCTGGTCGCTTTGACCGCTGCATCGAACTGTGGTCCTATGCGC
TCACCATGCAGCAGAAGATTCTACAGCCACTCAGCCCAATGACGCAGTCC
TCGCTGCTGTCCTTCGCGGAGCTGTTCAGCTTTATGCTGGTTGAGGCGGG
TCGCTTGCTGCCGAGAGGTCGAGTGGTTCCGCCGATCGAGCCCGACAGCA
TGCTGACGATATTCTACAAGGCGGTCAAAGAGGTTGAGCGTGGACTGGCT
TTCACGTTGGAACAGCAGAAGGACCAGCAGCATCCGCAGAAACAGCTGCC
AGCAGCTGACAAATCGCCATCCTGTTCGGCTTCCTCATCCGCATCTTCCT
CCTCCTCAACGACGCTGCTTTCGGCGCATCAGCACGATTGTAATCACGAT
CCCAATGCCCTGAGTCGCACCATGATAAGTGCCATTCACATAGGCTGTCT
GCTGAGCTCCCTGCTAGACACAGACGCCCTGAGCCCAGAGATGCGTCGCC
AGGTGATGGGGGCGCTGTACCGTCTGAATCGCTTGAAGGTGCGCGTAAGG
TTCGATCGCACCGCCTTGCACTACGCCTGCTATCGGGAGGGCACGCTGGC
CGGCCGCTATCCCTCATGCCAGTTCCCCTCGGTGACGCTGGCGAAGGCCT
TGCTGGAGGTGGGAGCTGACCCAAATGCCATCGACGAAGCGGGCAATACG
CCACTCCATTTGGCTACCATGCAGCCCTATGTGGAGCCCCTGTCGCACAT
CCTGCTCGAGGGCGGAGCGCATTTGGACACCAAAAACTATGCTGGCGAGA
CGTTTGAGAGTCTGCTGGCACCCACGCCCATGCATAAGATCATCGACCCA
ATGAAGTACACAACGCTGGCGTGTTTGGCCGCGAGGACGATCAAGAAGCA
TGACATTCGCTACGAGGGAACCGTACCAGCCACACTGTACGAGTTCATCG
AGCTGCACGCAAGCTTTCTAGACCAT
BO25143.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:37:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6966-RC | 1995 | CG6966-PC | 1..1992 | 17..2008 | 9960 | 100 | Plus |
| CG6966-RB | 1995 | CG6966-PB | 1..1992 | 17..2008 | 9960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:37:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6966-RC | 4578 | CG6966-RC | 706..2697 | 17..2008 | 9960 | 100 | Plus |
| CG6966-RB | 3445 | CG6966-RB | 706..2697 | 17..2008 | 9960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:37:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15081445..15082241 | 1826..1030 | 3985 | 100 | Minus |
| 3R | 32079331 | 3R | 15082300..15082904 | 1039..435 | 3025 | 100 | Minus |
| 3R | 32079331 | 3R | 15083119..15083481 | 437..75 | 1815 | 100 | Minus |
| 3R | 32079331 | 3R | 15081201..15081384 | 2008..1825 | 920 | 100 | Minus |
| 3R | 32079331 | 3R | 15094866..15094926 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:37:44 has no hits.
BO25143.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:48:02 Download gff for
BO25143.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6966-RB | 686..2677 | 17..2010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:37 Download gff for
BO25143.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6966-RB | 686..2677 | 17..2010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:33:18 Download gff for
BO25143.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6966-RB | 706..2697 | 17..2010 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:33:18 Download gff for
BO25143.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15081199..15081383 | 1826..2010 | 98 | <- | Minus |
| 3R | 15081446..15082232 | 1039..1825 | 100 | <- | Minus |
| 3R | 15082301..15082901 | 438..1038 | 100 | <- | Minus |
| 3R | 15083119..15083479 | 77..437 | 100 | <- | Minus |
| 3R | 15094867..15094926 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:37 Download gff for
BO25143.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10920589..10920648 | 17..76 | 100 | | Minus |
| arm_3R | 10906921..10907105 | 1826..2010 | 98 | <- | Minus |
| arm_3R | 10907168..10907954 | 1039..1825 | 100 | <- | Minus |
| arm_3R | 10908023..10908623 | 438..1038 | 100 | <- | Minus |
| arm_3R | 10908841..10909201 | 77..437 | 100 | <- | Minus |
BO25143.pep Sequence
Translation from 16 to 2026
> BO25143.pep
MDYKFIVFNAARDNNLAQLKATLYNKSSVEVGSLISAKVNGATPLVISCR
NGHYDIVEYLLTKCRANVEQVGSVSFDGEPIEDAPPLWCAAAAGHLGIVK
MLVRRGANVNSTTRTNSTPLRAACFDGHYEIVKYLVHHGADFEVANRHGH
TCLMIACYKGHFRIAQYLLSLNADVNRCSVKGNTALHDCAESGSLQILQL
LLKHGATMDVDYYGMTPLLAASVTGHMPIVEHLITLPCVSRESRIHALEL
LGATYVDRKRDMAAALNLWRRALEERAVEPPLEKKVQEPVPAYEMVREVT
SVEELEEMVLDPDEMRMQALVIRQRILGPTHPDTSYYIRFRGAHYADAGR
FDRCIELWSYALTMQQKILQPLSPMTQSSLLSFAELFSFMLVEAGRLLPR
GRVVPPIEPDSMLTIFYKAVKEVERGLAFTLEQQKDQQHPQKQLPAADKS
PSCSASSSASSSSSTTLLSAHQHDCNHDPNALSRTMISAIHIGCLLSSLL
DTDALSPEMRRQVMGALYRLNRLKVRVRFDRTALHYACYREGTLAGRYPS
CQFPSVTLAKALLEVGADPNAIDEAGNTPLHLATMQPYVEPLSHILLEGG
AHLDTKNYAGETFESLLAPTPMHKIIDPMKYTTLACLAARTIKKHDIRYE
GTVPATLYEFIELHASFLDH
BO25143.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:28:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6966-PC | 664 | CG6966-PC | 1..664 | 1..664 | 3446 | 100 | Plus |
| CG6966-PB | 664 | CG6966-PB | 1..664 | 1..664 | 3446 | 100 | Plus |
| Fem-1-PB | 650 | CG9025-PB | 51..644 | 43..665 | 702 | 32 | Plus |
| Fem-1-PA | 702 | CG9025-PA | 103..696 | 43..665 | 702 | 32 | Plus |
| m-cup-PB | 701 | CG11896-PB | 95..699 | 34..664 | 653 | 31.4 | Plus |
