Clone BO25144 Report

Search the DGRC for BO25144

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:251
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG34232-RA
Protein status:BO25144.pep: Imported from assembly
Sequenced Size:415

Clone Sequence Records

BO25144.complete Sequence

415 bp assembled on 2010-06-09

GenBank Submission: KX799871

> BO25144.complete
GAAGTTATCAGTCGACATGTTGAAGGCGATTATCGTTTTTGCCACTATCT
TGGTGGCCGTGGCCATGGCCATGCAGCCACTGGAGGACAATGAGCGAACC
CATCATCTGAACCACAAGCGCCAGTTGTCGCAACAGCACCACCACCACCA
CCAAAAGCTCCAGGAGGTGAGGCATTCGGGCCATGATAGTCTGAAACATG
GTGGTTCCCACGTTAAGGAGCATCAAGCGCATCACTCTGAGCGAAAGGCC
AGGCAGAGCCACAAGGAGCCGGGCCACAAGAAGAGTCACCACCAGAAGGA
GCACCGCCAGCAGCAGGACAACCACACCCGCAAATCCCGATCGCATTCCA
AGGGCAGCAAGCAGCATCACAAGCGGCACACGGGATCGCGTCGCCACGCA
AGCTTTCTAGACCAT

BO25144.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG34232-RC 384 CG34232-PC 1..381 17..397 1905 100 Plus
CG34232-RA 384 CG34232-PA 1..381 17..397 1905 100 Plus
CG34232-RB 390 CG34232-PB 18..387 28..397 1850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG34232-RC 775 CG34232-RC 178..559 16..397 1910 100 Plus
CG34232-RA 702 CG34232-RA 105..486 16..397 1910 100 Plus
CG34232-RB 831 CG34232-RB 246..615 28..397 1850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12165125..12165494 397..28 1850 100 Minus
Blast to na_te.dros performed 2014-11-28 02:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 696..737 295..336 111 73.8 Plus
gypsy12 10218 gypsy12 GYPSY12 10218bp 8578..8619 295..336 111 73.8 Plus

BO25144.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-09 11:57:28 Download gff for BO25144.complete
Subject Subject Range Query Range Percent Splice Strand
CG34232-RA 91..466 22..399 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:29:15 Download gff for BO25144.complete
Subject Subject Range Query Range Percent Splice Strand
CG34232-RA 91..466 22..399 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:37:38 Download gff for BO25144.complete
Subject Subject Range Query Range Percent Splice Strand
CG34232-RA 111..486 22..399 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:37:38 Download gff for BO25144.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12165123..12165497 22..399 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:29:15 Download gff for BO25144.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8052628..8053002 22..399 98   Minus

BO25144.pep Sequence

Translation from 16 to 415

> BO25144.pep
MLKAIIVFATILVAVAMAMQPLEDNERTHHLNHKRQLSQQHHHHHQKLQE
VRHSGHDSLKHGGSHVKEHQAHHSERKARQSHKEPGHKKSHHQKEHRQQQ
DNHTRKSRSHSKGSKQHHKRHTGSRRHASFLDH

BO25144.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG34232-PC 127 CG34232-PC 1..127 1..127 696 100 Plus
CG34232-PA 127 CG34232-PA 1..127 1..127 696 100 Plus
CG34232-PB 129 CG34232-PB 7..129 5..127 678 100 Plus