BO25168.complete Sequence
5506 bp assembled on 2010-12-13
GenBank Submission: KX798837
> BO25168.complete
GAAGTTATCAGTCGACATGGATCGCTACGACATGGAGGACGTCGTTGTGG
CGCCCCCTGCCGAGTGCAGTTCGCCGCTCAAGGAGTGGCGCCTCAAGCGC
CAGGCGGGCACACTAGACCGCTCCGATATCATCGAGTTCTTAAAGCGCGA
GTCTCCCAAGTATTTTGATTACCAGACTAGCGCTACAGTTAAAGATACCA
ATGTGATTACTCTAAAGTGCATGTTTAAGGAGTCGCTGGCCAAGGAGGAG
ATCATCGATGTCGTTGTGGAGTTTATGCTGGGCGACAATCCTTCCTCCGC
ACTGGAGAAGCTCCGACTGGAGGGCAACACGGCCACCGTCTGTGGCAAGG
TCTTTAAGAACGGGGAGCCCACCTACAGCTGCCGCGAGTGCGGCGTCGAT
CCCACCTGCGTGCTTTGCGTCAACTGTTTCAAGCGCTCGGCGCATCGCTT
TCACAAGTACAAGATGTCCACTTCCGGCGGCGGCGGCTGCTGTGACTGCG
GAGACGACGAGGCCTGGAAGAAGGATCAGTACTGCGAGCTGCATCTGGCA
AATCGCAAGAATCCGCTGGAGAGCAAGATCCTGACCGACGCAGTACTTGA
GCGGGTTGAGATCTGCTTTGGGGCAATCCTCGCCTTCTGCGTGAGTTATC
TGGAAATCGAGCCAAACGCCAGTCTACAGTGCCTGGATGGAAACGTGGAA
GGCGGCCAAGTGGACGGAGCGCAGTATTGCACTGTGCTCTACAACGACGA
GTCGCACACGTTCGACCAAGTCATTCAGACGCTGACCAAAATTGCCAAGT
GTCGGGCAAAGGACGCCATGGAAATCGTGGCGGCAATTGATCGCGAGGGA
CGAGCGGTGGTCAAATGCGATACATTTGAGGAGTGCAACAAACTAAAGGT
ATCCATCGAGAACCAAATGATTCTGCCGACCTCCCTGGTGTCGACGGCAC
GCAACAATCAGTCACTCAGGACATCGGTGCTGCACATCGGGGCCGTGGCC
TGTCAGCAGTTTGCCCTGCAGCTTCTCGGCTGGTTCCAGGAGTTCCTGGT
GCGACACTACCTCTTCCGGAAGACGTTCTCCGAGTTGGTGCAGCGCAAGC
AGGAGACATTCTGCATCCGGCACATCCTTGAGTACGACGTGAAGCTTTGG
AAGACGGCGCGCACCTGCTGGCACCGCCTCCTGATCTCTGGTATGCTTAT
GGAGTACGACAACAAAATGATCCTAGCCCAGGAGTTTTCGCGACGCTACG
CCACTATTGTGGAGGACTTTATCAGCGATGATCATGATCACGCCTTTTCG
ATTGTGTCGCTCAGTGTCCAGCTGTTCACGGTGCCCAGCATAGCCCATCA
TCTGATCGCTCATGAGGGCATCTTTGACAAGCTGCTGCACACGTTCTACC
ACGTTGCCATCGAGAAGTTCATTCGTAACAAGACGCTGCACTTTAGCAAG
AACATCGCCAGCCTCACCTTCTTCAAGCGGGCTAACTACATCCTCTACGA
TCTGCGATACCTGCTCAGCCTAAAGCCGGATGTGCTGAGCAATGATTTAC
GAAACGGTTTCCTAGAAGGCTGCCGGGCTTTGATGCGCGTTCTAAACGTG
ATGCAGGGCATGGAGTCGATGACCAGACAGACGGGCCAACATATGGACTA
CGAGCCAGAGTGGGAGTGCGCCTTCAACCTGCACATCAAGCTGGCCACGA
CCATCTCGCAGGTGATTGATTGGGCGTCCGGCGATGTGAAGCTGCTGCGT
AAGCTCTACAAGATGACAATGCGGGCGCTGGTGAGCAACAGCTTTATTGT
GGGTGGCGAGAAGGTCATGCAGCCGAAAAAAGTGGCGGACCATGTAGCCA
ACTGTCTAGTTTACGACATATCAGTGCAGCCGGTATCCATCCACTTGCCT
TTGTCGCGTTTCTTCGCCGGAATCTATCTGCACTTGGGTGCCCACGATTT
AACGTACGACGGGCTGCAGACGGAAACAGAAGCGTTGAGCATTAAGCTAA
CGCCCAGGGAGATTATAGAACCGGTTTTGTGCACCCAAGCAATGATCGCC
CAGGTGGGCGCAGGACTGTGGCGCCGCAATGGTTACACCCTGCTGCATCA
GCTCTACTTCTACCGAAATGTACGTTGCCGCGTGGAGATGCTGGACAGGG
ACATAGCCTGCCTGCAGATAGGCGCCTCCCTAATGGAGAGCAACGAGTTC
CTGATCCATGTGTTGAATAGGTTCAACACGATCCCCTGGTTACAGGAAAA
CTACTGGTCCCTATTGTCGGGTAATGAAATGAACGATGATATCATTCGAG
AGGCGTCAATCTTTGACGAGTTCCTGGAACTTCTGATCGTGATCATTGGA
GAACGTTGGATGCCTGGCGTTTCGATGGTGACCGAAGAGGATCGCCTGCG
CAAGGAGATCATCCAGCTGTTGTGTATCAAGCCATACTCACACTCGGAGT
TGAGTCGCGCCTTGCCAGATGGCAATAGCGGAAATAGCGACAACGTTTTC
GAGGAAGTTATCAACACGGTTGCCGTGTTCAAGAAACCCGTTGGAGCCGA
CAGCAAGGGGGTGTACGAACTAAAGGAACATTTGCTTAAGGAGTTCAACA
TGTACTTCTATCACTACACCAAAGAGGACAAGTCCAAGGCCGAGGAACTG
CAACGGGAGCGCCGAAAGGCCAAGAAGCAGCTTGTCTGCTGCCCGCCACC
AATGTTGCCAAAACTAACACCAGCCTTCACACCCATGGCCAACATCCTGC
AGTGCCCTGTGTTCCTCAACATCTGCAGCTTGATTATGGAAAGGGCTTTA
AATGCTTACAGTCGCAGCTTTACCGAATCGCATCTTCAAAAGGTCCTTCA
CCTGCTGGGTTATGCCATTCAGGAGGAGCTTAGCGAGCACTATCCCTTCT
TGAGCTTCTACGAGCGTTCCCAGGAGTACGGAATTCTGGAGAAGTTGGAA
GAGCTCGCTCGCTGCCCGAGGTTGGAGGCTCATTATGACTTTGTGCTGTG
GACCATCGAGCGCTTCAAGCAGCTGCAGGCCAAGCAGGCTCCCAGTGATG
GTAGAGCAGGACCCAGTTGCTCTCAGCAAGGAACCGGAGGGAAATTGTCA
CTCAGCGCTGAGGAGCAAGCGCGAGAGGAGAGGGAGAATCGTGCTCGTCT
AGCCGCCGAGCGTCGAGCCCACATTATGGCCCAGATGCAGAAAGCCCAAA
AGTCGTTCATAAGCAGCAATGCAGAAATGTTTGCGGACACCGAAAACGAA
ACACGCAAGGAGTCAGCATCCACGGGTCCAATGGATTGGGAGGATATTCC
CCCCGAGGAAGAACAGGGAGCAGTGGCCCTTGAGTCGAAGGTAGCCTGCT
TGGGGCCGGACCGCAAGTTTTATCACGGCACCGATGATACCTTTAAATGC
ATCCTCTGCTTCGAGAACTGTGCCATTAGCCGTGGGGGCCGGCAATTGGT
TAGCTCTGCCTTTGTCCAAACCTCGCGTGTGATCTTCACTACGCCCAATT
TGCGTAATAGTCAGAGCGCACTGCACATTAGTTGCTGCGGTCATGTGATG
CACTACAGCTGCTGGCTGGAGTACTTCACCAACGAGGAGTTCAAGGAGCT
GCGTCGTCCGCACCGCAATCGTGCGGCCCTAGCCCAGGCCGCCAACGTGG
AGTTCCAATGTCCGTATTGCCGAACCCTAAGTAACGCTATAATACCGGTA
ACCGAAACGCTGCCCGCTTTTTCGGCGCCTCCTTCACCGAACGAAAGCTA
TTTACCATTGGACAGTTTCGTGGAGATCATGAGCACACTGGCCATCGAAC
TGGGTAACGTGAAGGACCACGAATTGACAACACTTCCAAGTGTGTCCAAC
ATTTTGCGCTTGTCCGGCGTGGTCGGTGGCTTGGCTCAATTCGAGCGGAG
CGTGCAGCTCATCAAGAATCCTCCTAGACTGCATGCTGACTACATCGAAG
GAATTGAATTCCTTAAAAAAGCCCTGCTAAATACCATGAAGATTCAGCAG
TCACATCTAAAGGACCATCCAGCCATCGAAAGTATCGAAATGGTACCCAT
ACTGTGGGACAGCTGCAGCTACACGCTGCAGGCACTGGAGATCTATTTGT
ACGCGGTCGAGAAGCCATTGAAGGCCGAGCTGTCAATGCGCCACCAGAGC
TGTGCCAGGAACTTGGTGAGGGCTTGCTCACGCAGTTCGGCCTTGGAATG
GGAAACTGATCTTCCATTGCTTCCGCCGATGCGTTCCCAGGCGGAGTTTT
CCTCTAGACTGCTGGATACAATCTTCAATCAAAATGACACCAGTGTGCTC
GAGTGGGACTGCTTCCGCGTGCTAGTGCCGTTCCAGTTTGGAGTGCTCAA
TCTGATGGTACCCGAGAAGGGATATAAAACAATCATACCCAGCGGCAGCA
TGTTCGACTTTTACATCATGCAGACTATGTTCCTGGCCCAGCTGACCAAG
GCGGTCCTCTGCTTTGACGTGGAGAAGGAGAAGGCCAAACGAGCGGAGAA
GGCGCCCAATTCTGAACTTACACAGTTGGATTACATAGAGCAGCTACCGT
CACGGATTCGGGACAACATGATCGACTTTTATCGTCGCTACAATATCCCA
GCGAGAGTGCTGCAGAAGACTAAACAGAAACAGCTGGTGGAGGAAGAATC
GGAAGAGAATCAGGGTCATGGGCAAACAGTGGTGATACCCTGTGAATCGC
ATCATTTGGCCCTTCTTCTCGAGTACGTGCAGCGACAGATGAGCTCGTTC
CTGCGCTGCTCCTGTCTCTTCTATCGCTTTCTCACCGATGTGGATTTCCC
AGACACATTTCCCACAGATCAACCGGATCGCTTTGATCTGATGTGCCAGT
ACTTGGGCCTGGACCCCATGCTGGGTGTCTACTTTGACATGGAGACGGTA
TACGCCACCATGATGCACTCGTTTGCCTCGCATCCTCACATTGACCGTGA
AGTGGAACAGCGTTGTCAGCCTGACGCCCGTCGTTCCCTTCAGGTGGAAC
CTTGCCTGCGCCCGCTGCCCCGCTTGAAGGTACTGTGTGATGACTTCAGC
GATTTGATCAACAGCGTCTCGGACATCTTCTGTCCGAACAACGAGCGCGA
AGAGATGAAGACACCAACGATGTGTCTGATATGCGGCTTAATCCTGTGCG
GTCAGTCGTACTGCTGCCAGCCAGAGCTGGGCAAGGTCTCGGTGGGCGCA
TGCACTCATCACGCTCACGCTTGTGGCGCCGAAGTGGGCATCTTTCTGCG
CATTCGCGACTGCCAGGTGGTGTACCTGGGCCGTGGCAAGGGGTGCTTCG
TCCCGCCGCCATATTTGGACGAGTACGGCGAGACGGATATGGGTCTGAGG
CGCGGTAATCCGCTGAGACTGTCCCAGGCGGCTTACAGAAAGATCTACCT
GCAGTGGCTGGGGCATGGGCTGCACGGCGAGATCGCCCGTCTGAACGACA
ACGCCAATGTGGCAGCGGCGGCGCAGTGGCATCACATGGCAAGCTTTCTA
GACCAT
BO25168.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:38:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9086-RC | 5475 | CG9086-PC | 1..5472 | 17..5488 | 27360 | 100 | Plus |
| CG9086-RB | 5475 | CG9086-PB | 1..5472 | 17..5488 | 27360 | 100 | Plus |
| CG9086-RA | 5475 | CG9086-PA | 1..5472 | 17..5488 | 27360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9086-RC | 7096 | CG9086-RC | 360..5831 | 17..5488 | 27360 | 100 | Plus |
| CG9086-RB | 6241 | CG9086-RB | 218..5689 | 17..5488 | 27360 | 100 | Plus |
| CG9086-RA | 6383 | CG9086-RA | 360..5831 | 17..5488 | 27360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16958676..16960076 | 4371..2971 | 7005 | 100 | Minus |
| X | 23542271 | X | 16960512..16961675 | 2730..1567 | 5820 | 100 | Minus |
| X | 23542271 | X | 16957497..16958615 | 5488..4370 | 5595 | 100 | Minus |
| X | 23542271 | X | 16961740..16962434 | 1569..875 | 3460 | 99.9 | Minus |
| X | 23542271 | X | 16962931..16963266 | 548..213 | 1680 | 100 | Minus |
| X | 23542271 | X | 16962492..16962826 | 881..547 | 1675 | 100 | Minus |
| X | 23542271 | X | 16967495..16967672 | 194..17 | 890 | 100 | Minus |
| X | 23542271 | X | 16960144..16960274 | 2971..2841 | 655 | 100 | Minus |
| X | 23542271 | X | 16960338..16960451 | 2844..2731 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:38:31 has no hits.
BO25168.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:54:50 Download gff for
BO25168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9086-RA | 330..5801 | 17..5490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:34:00 Download gff for
BO25168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9086-RA | 360..5831 | 17..5490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:25 Download gff for
BO25168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9086-RA | 360..5831 | 17..5490 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:25 Download gff for
BO25168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16957495..16958614 | 4371..5490 | 99 | <- | Minus |
| X | 16958677..16960075 | 2972..4370 | 100 | <- | Minus |
| X | 16960144..16960272 | 2843..2971 | 100 | <- | Minus |
| X | 16960340..16960451 | 2731..2842 | 100 | <- | Minus |
| X | 16960512..16961673 | 1569..2730 | 100 | <- | Minus |
| X | 16961741..16962428 | 881..1568 | 100 | <- | Minus |
| X | 16962493..16962825 | 548..880 | 100 | <- | Minus |
| X | 16962932..16963266 | 213..547 | 100 | <- | Minus |
| X | 16963703..16963720 | 195..212 | 100 | <- | Minus |
| X | 16967495..16967672 | 17..194 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:34:00 Download gff for
BO25168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16851528..16852647 | 4371..5490 | 99 | <- | Minus |
| arm_X | 16852710..16854108 | 2972..4370 | 100 | <- | Minus |
| arm_X | 16854177..16854305 | 2843..2971 | 100 | <- | Minus |
| arm_X | 16854373..16854484 | 2731..2842 | 100 | <- | Minus |
| arm_X | 16854545..16855706 | 1569..2730 | 100 | <- | Minus |
| arm_X | 16855774..16856461 | 881..1568 | 100 | <- | Minus |
| arm_X | 16856526..16856858 | 548..880 | 100 | <- | Minus |
| arm_X | 16856965..16857299 | 213..547 | 100 | <- | Minus |
| arm_X | 16857736..16857753 | 195..212 | 100 | <- | Minus |
| arm_X | 16861528..16861705 | 17..194 | 100 | | Minus |
BO25168.pep Sequence
Translation from 16 to 5506
> BO25168.pep
MDRYDMEDVVVAPPAECSSPLKEWRLKRQAGTLDRSDIIEFLKRESPKYF
DYQTSATVKDTNVITLKCMFKESLAKEEIIDVVVEFMLGDNPSSALEKLR
LEGNTATVCGKVFKNGEPTYSCRECGVDPTCVLCVNCFKRSAHRFHKYKM
STSGGGGCCDCGDDEAWKKDQYCELHLANRKNPLESKILTDAVLERVEIC
FGAILAFCVSYLEIEPNASLQCLDGNVEGGQVDGAQYCTVLYNDESHTFD
QVIQTLTKIAKCRAKDAMEIVAAIDREGRAVVKCDTFEECNKLKVSIENQ
MILPTSLVSTARNNQSLRTSVLHIGAVACQQFALQLLGWFQEFLVRHYLF
RKTFSELVQRKQETFCIRHILEYDVKLWKTARTCWHRLLISGMLMEYDNK
MILAQEFSRRYATIVEDFISDDHDHAFSIVSLSVQLFTVPSIAHHLIAHE
GIFDKLLHTFYHVAIEKFIRNKTLHFSKNIASLTFFKRANYILYDLRYLL
SLKPDVLSNDLRNGFLEGCRALMRVLNVMQGMESMTRQTGQHMDYEPEWE
CAFNLHIKLATTISQVIDWASGDVKLLRKLYKMTMRALVSNSFIVGGEKV
MQPKKVADHVANCLVYDISVQPVSIHLPLSRFFAGIYLHLGAHDLTYDGL
QTETEALSIKLTPREIIEPVLCTQAMIAQVGAGLWRRNGYTLLHQLYFYR
NVRCRVEMLDRDIACLQIGASLMESNEFLIHVLNRFNTIPWLQENYWSLL
SGNEMNDDIIREASIFDEFLELLIVIIGERWMPGVSMVTEEDRLRKEIIQ
LLCIKPYSHSELSRALPDGNSGNSDNVFEEVINTVAVFKKPVGADSKGVY
ELKEHLLKEFNMYFYHYTKEDKSKAEELQRERRKAKKQLVCCPPPMLPKL
TPAFTPMANILQCPVFLNICSLIMERALNAYSRSFTESHLQKVLHLLGYA
IQEELSEHYPFLSFYERSQEYGILEKLEELARCPRLEAHYDFVLWTIERF
KQLQAKQAPSDGRAGPSCSQQGTGGKLSLSAEEQAREERENRARLAAERR
AHIMAQMQKAQKSFISSNAEMFADTENETRKESASTGPMDWEDIPPEEEQ
GAVALESKVACLGPDRKFYHGTDDTFKCILCFENCAISRGGRQLVSSAFV
QTSRVIFTTPNLRNSQSALHISCCGHVMHYSCWLEYFTNEEFKELRRPHR
NRAALAQAANVEFQCPYCRTLSNAIIPVTETLPAFSAPPSPNESYLPLDS
FVEIMSTLAIELGNVKDHELTTLPSVSNILRLSGVVGGLAQFERSVQLIK
NPPRLHADYIEGIEFLKKALLNTMKIQQSHLKDHPAIESIEMVPILWDSC
SYTLQALEIYLYAVEKPLKAELSMRHQSCARNLVRACSRSSALEWETDLP
LLPPMRSQAEFSSRLLDTIFNQNDTSVLEWDCFRVLVPFQFGVLNLMVPE
KGYKTIIPSGSMFDFYIMQTMFLAQLTKAVLCFDVEKEKAKRAEKAPNSE
LTQLDYIEQLPSRIRDNMIDFYRRYNIPARVLQKTKQKQLVEEESEENQG
HGQTVVIPCESHHLALLLEYVQRQMSSFLRCSCLFYRFLTDVDFPDTFPT
DQPDRFDLMCQYLGLDPMLGVYFDMETVYATMMHSFASHPHIDREVEQRC
QPDARRSLQVEPCLRPLPRLKVLCDDFSDLINSVSDIFCPNNEREEMKTP
TMCLICGLILCGQSYCCQPELGKVSVGACTHHAHACGAEVGIFLRIRDCQ
VVYLGRGKGCFVPPPYLDEYGETDMGLRRGNPLRLSQAAYRKIYLQWLGH
GLHGEIARLNDNANVAAAAQWHHMASFLDH
BO25168.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:46:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9086-PC | 1824 | CG9086-PC | 1..1824 | 1..1824 | 9617 | 100 | Plus |
| CG9086-PB | 1824 | CG9086-PB | 1..1824 | 1..1824 | 9617 | 100 | Plus |
| CG9086-PA | 1824 | CG9086-PA | 1..1824 | 1..1824 | 9617 | 100 | Plus |
| CG42593-PC | 2218 | CG42593-PC | 205..343 | 89..222 | 172 | 30 | Plus |
| CG42593-PC | 2218 | CG42593-PC | 2075..2202 | 1668..1800 | 172 | 30.1 | Plus |
| CG42593-PA | 2219 | CG42593-PA | 205..343 | 89..222 | 172 | 30 | Plus |
