BO25172.complete Sequence
1618 bp assembled on 2010-12-13
GenBank Submission: KX796392
> BO25172.complete
GAAGTTATCAGTCGACATGTTCTATACATTTAGTTGGATTTCGAAGCATT
ACAAGAAAATGAGAAAATTCGAGTCAGCTGAGTGGGAAAATGTCACACAA
CTGAACTTGGCCGAGGCGCAGGTATTTACTGGAGACGAAGGGAACCTTCA
GTCTATGGAGAAAATTTACTTGAAATTCTTTGAAAAGGATGATCTCATCA
GTCGAATGGCCTTGTTCAATCAGTTTCACCTCTACACCTGCAAGACGCCG
CAATCGCCGCAGCAATTTCTTTACCACTTTTATGTGAAGTACATCATTCA
AGAACTGAAGGCTCACGCGTTAGTAGAGTGGTCCTGGCTGTTGCTCAGGA
AGTTTGGGCGAGGGGGATCCATCGAGGAGGAGCAGGCAAGCCGGGCAGCT
TACAAGCGACGGACAGAGGGCACACTACCGAAGATCAAAGTCCTGATGAG
CCAAGCAGATCGCTCCGTGTGGCGCTGTGATCCCCAGGAACACCAGTCAG
GGGTCACCCATGAGGAGGTCACCCGCCTTCTGCAGGGTTACGTGGAGAAT
GAGGTGGACCTTAACAGCGATGGAGCGTGCAATCAGGAATGTGGTTACTA
CAAATTAGCCAAAAACGAGGGTTGCTTCGATAATAAGTTCTGTTCCGAGC
AGCCAAAATGTACGGGCGGAGTTCATGATTGTCGCTTTGTGGAGTCGAAC
ATGAAGATTTGTCAGGCGGAAAAGAACTCTAGCAGGCGGTACGAGTTCAT
AAAGTACGAAAGTGGCCTTGTTCATGGCAATGAGAAACCTTGTGCCACGT
GGTTGAACAGTGCAAAGAGTTGGAATCGGTGGCTTTTCATGGAATGCAGC
TACTGCCTTTGCTTGTGCGATGATCAGAGTCCTCAATCGGATCGGTACTT
CAATCTGCGTCCTGTGATCGCCGATGTTAAAAATAACAGGGTCGTGGTGG
GGCTCCGATTTGTGAAGAGGAATCGCATTTTTCACCTGCAAGTCCAAGAA
GGTGAACTTCTGCCACTTGGAGACATCAACGGGACAACTCTTCGGTGGAA
GCCCGTGGATTCGTACTCCATATCCGACAAGGATGTGTCTGAAAACGTTG
ACTACCATACACTAACCTACGAAAAGCGATCAATTGATCTGGGTGATCTG
AATGCGAAAATAAATTCTGTGGTTACCGGCCTGCGCTTCCGAGTGTTTGG
AGCCCATCTTCAACTGGAGGCCCAGTTCACCGCGGTTGAGTTTGAAAGCG
GAAAGCTCATCGATCCGAAGAAGACCAGCCACTGGATCTCCATGGGCACC
GATCAGCCGAGGGAGAGACTGCCACTGATGGACGCCCAGGTATCCACTAA
ATCCTCAGTGCTCTCGATACCTTACCCTAGTGACAACCAGTTCATCGAAT
TCACCAACACGGGCTTCGTCCAGGATGCCGCCCAAAGAACGGTGCCCTTC
ATCGATATTCAGGACGTTGTATCGGACCCACCAGTTCCACTGTCCGGAAT
CGGAATTTACTATAAGGGTCAAGATGGCTACGGTGGTTTTTTGGCGCCAC
GAATCATTACCTACGATTTCACCTCATATGTTCAGATCCCAACATGGGAA
GCAAGCTTTCTAGACCAT
BO25172.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:38:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31664-RB | 1587 | CG31664-PB | 1..1584 | 17..1600 | 7920 | 100 | Plus |
| CG31664-RC | 1590 | CG31664-PC | 1..1587 | 17..1600 | 7855 | 99.8 | Plus |
| l(1)G0193-RB | 1941 | CG2206-PB | 1718..1906 | 1383..1571 | 255 | 75.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31664-RB | 1971 | CG31664-RB | 254..1837 | 17..1600 | 7920 | 100 | Plus |
| CG31664-RC | 2075 | CG31664-RC | 254..1840 | 17..1600 | 7855 | 99.8 | Plus |
| l(1)G0193-RB | 2559 | CG2206-RB | 2110..2298 | 1383..1571 | 255 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1825185..1825904 | 940..221 | 3600 | 100 | Minus |
| 2L | 23513712 | 2L | 1824761..1825137 | 1312..936 | 1885 | 100 | Minus |
| 2L | 23513712 | 2L | 1824407..1824697 | 1600..1310 | 1455 | 100 | Minus |
| 2L | 23513712 | 2L | 1825987..1826193 | 223..17 | 1035 | 100 | Minus |
| X | 23542271 | X | 7941739..7941927 | 1571..1383 | 255 | 75.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:38:43 has no hits.
BO25172.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:54:51 Download gff for
BO25172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31664-RB | 137..1715 | 22..1602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:34:03 Download gff for
BO25172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31664-RB | 259..1837 | 22..1602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:29 Download gff for
BO25172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31664-RB | 259..1837 | 22..1602 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:29 Download gff for
BO25172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1824405..1824695 | 1312..1602 | 99 | <- | Minus |
| 2L | 1824762..1825133 | 940..1311 | 100 | <- | Minus |
| 2L | 1825186..1825901 | 224..939 | 100 | <- | Minus |
| 2L | 1825987..1826188 | 22..223 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:34:03 Download gff for
BO25172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1824405..1824695 | 1312..1602 | 99 | <- | Minus |
| arm_2L | 1824762..1825133 | 940..1311 | 100 | <- | Minus |
| arm_2L | 1825186..1825901 | 224..939 | 100 | <- | Minus |
| arm_2L | 1825987..1826188 | 22..223 | 100 | | Minus |
BO25172.pep Sequence
Translation from 16 to 1618
> BO25172.pep
MFYTFSWISKHYKKMRKFESAEWENVTQLNLAEAQVFTGDEGNLQSMEKI
YLKFFEKDDLISRMALFNQFHLYTCKTPQSPQQFLYHFYVKYIIQELKAH
ALVEWSWLLLRKFGRGGSIEEEQASRAAYKRRTEGTLPKIKVLMSQADRS
VWRCDPQEHQSGVTHEEVTRLLQGYVENEVDLNSDGACNQECGYYKLAKN
EGCFDNKFCSEQPKCTGGVHDCRFVESNMKICQAEKNSSRRYEFIKYESG
LVHGNEKPCATWLNSAKSWNRWLFMECSYCLCLCDDQSPQSDRYFNLRPV
IADVKNNRVVVGLRFVKRNRIFHLQVQEGELLPLGDINGTTLRWKPVDSY
SISDKDVSENVDYHTLTYEKRSIDLGDLNAKINSVVTGLRFRVFGAHLQL
EAQFTAVEFESGKLIDPKKTSHWISMGTDQPRERLPLMDAQVSTKSSVLS
IPYPSDNQFIEFTNTGFVQDAAQRTVPFIDIQDVVSDPPVPLSGIGIYYK
GQDGYGGFLAPRIITYDFTSYVQIPTWEASFLDH
BO25172.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:47:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31664-PB | 528 | CG31664-PB | 1..528 | 1..528 | 2834 | 100 | Plus |
| CG31664-PC | 529 | CG31664-PC | 1..529 | 1..528 | 2822 | 99.8 | Plus |
| l(1)G0193-PA | 664 | CG2206-PA | 122..660 | 4..525 | 1396 | 50.1 | Plus |
| l(1)G0193-PB | 646 | CG2206-PB | 116..642 | 7..525 | 1385 | 51.5 | Plus |
