BO25180.complete Sequence
613 bp assembled on 2010-06-09
> BO25180.complete
GAAGTTATCAGTCGACATGTTTCGTAGCTTGGTGAATATTACAAGCAAAT
ACAAAGTCCTACGCGGCATGATATCGTATGGCACCCTCTGGCCCTGCGGC
TCCCTCATCGAGCAGACCATGATCGAGAAGAAGACATTCCGGACGTACGA
CTGGATGAAGTGCCTTAGGTTCAGCTTATTCGGCTTCTTCTTTATGGGGC
CCACCATATATGTGTGGATCAGATTGGCCAGCGTTATGTGGCCGCGCACC
GACATTAAGTCATCGCTCTGCAAGGCGATCACCGAGCAGACCGCTTATGA
TCCGATGGCCATCAGCTCGTTCCTCTTCTTCATGACCTTGATGGAGGGCA
ACTCGTACGCGGAGGCCAAGCGGGAGGTCAACGATAAATTCCTGGACGCC
TACAAGGTGGGCGTTATTTATTGGCCCTGCGTGCAGACGGTGAACTTCGC
CTTTGTTCCGGCGCGAAACCAGGTCGTGTTTACCTCCTTCTTCAGCATGT
GCTGGACCACCTTCCTGGCCTACGTCAAGTTCCTGCAGCTGCACCCTCCC
GTCGATGTGGACCACCACGCCCTGGACATCCACTTCCTGGAGATGGCAAG
CTTTCTAGACCAT
BO25180.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:51:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2022-RB | 582 | CG2022-PB | 1..579 | 17..595 | 2880 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2022-RB | 902 | CG2022-RB | 156..734 | 17..595 | 2880 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4986668..4986888 | 595..375 | 1090 | 99.5 | Minus |
3R | 32079331 | 3R | 4988249..4988460 | 378..167 | 1060 | 100 | Minus |
3R | 32079331 | 3R | 4988536..4988689 | 170..17 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:51:25 has no hits.
BO25180.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-09 11:57:20 Download gff for
BO25180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2022-RA | 162..734 | 23..597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:29:00 Download gff for
BO25180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2022-RB | 162..734 | 23..597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:37:26 Download gff for
BO25180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2022-RB | 162..734 | 23..597 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:37:26 Download gff for
BO25180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4986665..4986886 | 377..597 | 98 | <- | Minus |
3R | 4988251..4988458 | 169..376 | 100 | <- | Minus |
3R | 4988538..4988683 | 23..168 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:29:00 Download gff for
BO25180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 812387..812608 | 377..597 | 98 | <- | Minus |
arm_3R | 813973..814180 | 169..376 | 100 | <- | Minus |
arm_3R | 814260..814405 | 23..168 | 100 | | Minus |
BO25180.pep Sequence
Translation from 16 to 613
> BO25180.pep
MFRSLVNITSKYKVLRGMISYGTLWPCGSLIEQTMIEKKTFRTYDWMKCL
RFSLFGFFFMGPTIYVWIRLASVMWPRTDIKSSLCKAITEQTAYDPMAIS
SFLFFMTLMEGNSYAEAKREVNDKFLDAYKVGVIYWPCVQTVNFAFVPAR
NQVVFTSFFSMCWTTFLAYVKFLQLHPPVDVDHHALDIHFLEMASFLDH
BO25180.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:00:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2022-PB | 193 | CG2022-PB | 1..193 | 1..193 | 1035 | 99.5 | Plus |
CG14778-PA | 186 | CG14778-PA | 15..180 | 10..176 | 453 | 46.7 | Plus |
CG14777-PF | 196 | CG14777-PF | 23..181 | 12..171 | 434 | 47.5 | Plus |
CG14777-PC | 196 | CG14777-PC | 23..181 | 12..171 | 434 | 47.5 | Plus |
CG14777-PE | 196 | CG14777-PE | 23..181 | 12..171 | 434 | 47.5 | Plus |