Clone BO25182 Report

Search the DGRC for BO25182

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:251
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptLSm-4-RB
Protein status:BO25182.pep: Imported from assembly
Sequenced Size:649

Clone Sequence Records

BO25182.complete Sequence

649 bp assembled on 2010-06-09

GenBank Submission: KX798068

> BO25182.complete
GAAGTTATCAGTCGACATGTCGTCTACGTTTAGATATAATCTATTAAGGA
GTGTAAAGCCATACACTTCATTCACTCCGCAATTGACTAAGTCTATGTTG
CGTGTCCTTATTCAAGTGTCTGTGCACTACATTGAATCAAAGAAGTCTTC
GTCGGAAGTGCTTTCCCTGGCACTAAATAAACTAACAAATGGAGGTCACG
AAATCCCTCCGAACTTTTGTGAACTTTTTACAATGGTTTTCTTGACAATG
CAAATCTTTTTAAGATATCCCAAGGGCGTGGTGAAGCATCATGAGCTGCG
AAAATGTTTAATGGACGATTTAAATTTAACAGAAGAATATGTTGAAGATA
TCTGCAAAGTTTTGCTTAACCATCGAGACGTACTGAGCAAGAACTTTTCA
GATACTAAAATGGACCGTGTCAAAATGTCAAAGTTGCAATGGAGAATCAA
CATTTCCTTATCATTAAATACCGTGCAAATTGATAAACCTACAATAGTCC
TCCACTTTAAGCTCCAAAATAAGGAATATCGAACTTTAGAATTGCCACTG
TCCATGTTTCAACAAGTGCGCTATAATATTGCTCTTTTACTAAATGAATT
GCAGTCATTGCAAAGCCGATTGGCTTTAAAAGCAAGCTTTCTAGACCAT

BO25182.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
LSm-4-RC 618 CG33677-PC 1..615 17..631 3030 99.5 Plus
LSm-4-RB 618 CG33677-PB 1..615 17..631 3030 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
LSm-4-RC 931 CG33677-RC 68..682 17..631 3030 99.5 Plus
LSm-4-RB 1578 CG33677-RB 68..682 17..631 3030 99.5 Plus
CG17768-RA 1578 CG17768-RA 68..682 17..631 3030 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10404829..10405136 324..17 1540 100 Minus
2L 23513712 2L 10404388..10404550 631..469 770 98.2 Minus
2L 23513712 2L 10404611..10404754 468..325 720 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:51:30 has no hits.

BO25182.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-09 11:57:21 Download gff for BO25182.complete
Subject Subject Range Query Range Percent Splice Strand
LSm-4-RB 33..643 17..627 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:29:02 Download gff for BO25182.complete
Subject Subject Range Query Range Percent Splice Strand
CG17768-RA 68..678 17..627 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:37:27 Download gff for BO25182.complete
Subject Subject Range Query Range Percent Splice Strand
CG17768-RA 68..678 17..627 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:37:27 Download gff for BO25182.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10404611..10404754 325..468 100 <- Minus
2L 10404392..10404550 469..627 98 <- Minus
2L 10404829..10405136 17..324 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:29:02 Download gff for BO25182.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10404392..10404550 469..627 98 <- Minus
arm_2L 10404611..10404754 325..468 100 <- Minus
arm_2L 10404829..10405136 17..324 100   Minus

BO25182.pep Sequence

Translation from 16 to 649

> BO25182.pep
MSSTFRYNLLRSVKPYTSFTPQLTKSMLRVLIQVSVHYIESKKSSSEVLS
LALNKLTNGGHEIPPNFCELFTMVFLTMQIFLRYPKGVVKHHELRKCLMD
DLNLTEEYVEDICKVLLNHRDVLSKNFSDTKMDRVKMSKLQWRINISLSL
NTVQIDKPTIVLHFKLQNKEYRTLELPLSMFQQVRYNIALLLNELQSLQS
RLALKASFLDH

BO25182.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
LSm-4-PC 205 CG33677-PC 1..205 1..205 1039 100 Plus
LSm-4-PB 205 CG33677-PB 1..205 1..205 1039 100 Plus