BO25182.complete Sequence
649 bp assembled on 2010-06-09
GenBank Submission: KX798068
> BO25182.complete
GAAGTTATCAGTCGACATGTCGTCTACGTTTAGATATAATCTATTAAGGA
GTGTAAAGCCATACACTTCATTCACTCCGCAATTGACTAAGTCTATGTTG
CGTGTCCTTATTCAAGTGTCTGTGCACTACATTGAATCAAAGAAGTCTTC
GTCGGAAGTGCTTTCCCTGGCACTAAATAAACTAACAAATGGAGGTCACG
AAATCCCTCCGAACTTTTGTGAACTTTTTACAATGGTTTTCTTGACAATG
CAAATCTTTTTAAGATATCCCAAGGGCGTGGTGAAGCATCATGAGCTGCG
AAAATGTTTAATGGACGATTTAAATTTAACAGAAGAATATGTTGAAGATA
TCTGCAAAGTTTTGCTTAACCATCGAGACGTACTGAGCAAGAACTTTTCA
GATACTAAAATGGACCGTGTCAAAATGTCAAAGTTGCAATGGAGAATCAA
CATTTCCTTATCATTAAATACCGTGCAAATTGATAAACCTACAATAGTCC
TCCACTTTAAGCTCCAAAATAAGGAATATCGAACTTTAGAATTGCCACTG
TCCATGTTTCAACAAGTGCGCTATAATATTGCTCTTTTACTAAATGAATT
GCAGTCATTGCAAAGCCGATTGGCTTTAAAAGCAAGCTTTCTAGACCAT
BO25182.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:51:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LSm-4-RC | 618 | CG33677-PC | 1..615 | 17..631 | 3030 | 99.5 | Plus |
LSm-4-RB | 618 | CG33677-PB | 1..615 | 17..631 | 3030 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LSm-4-RC | 931 | CG33677-RC | 68..682 | 17..631 | 3030 | 99.5 | Plus |
LSm-4-RB | 1578 | CG33677-RB | 68..682 | 17..631 | 3030 | 99.5 | Plus |
CG17768-RA | 1578 | CG17768-RA | 68..682 | 17..631 | 3030 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10404829..10405136 | 324..17 | 1540 | 100 | Minus |
2L | 23513712 | 2L | 10404388..10404550 | 631..469 | 770 | 98.2 | Minus |
2L | 23513712 | 2L | 10404611..10404754 | 468..325 | 720 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:51:30 has no hits.
BO25182.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-09 11:57:21 Download gff for
BO25182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LSm-4-RB | 33..643 | 17..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:29:02 Download gff for
BO25182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17768-RA | 68..678 | 17..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:37:27 Download gff for
BO25182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17768-RA | 68..678 | 17..627 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:37:27 Download gff for
BO25182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10404611..10404754 | 325..468 | 100 | <- | Minus |
2L | 10404392..10404550 | 469..627 | 98 | <- | Minus |
2L | 10404829..10405136 | 17..324 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:29:02 Download gff for
BO25182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10404392..10404550 | 469..627 | 98 | <- | Minus |
arm_2L | 10404611..10404754 | 325..468 | 100 | <- | Minus |
arm_2L | 10404829..10405136 | 17..324 | 100 | | Minus |
BO25182.pep Sequence
Translation from 16 to 649
> BO25182.pep
MSSTFRYNLLRSVKPYTSFTPQLTKSMLRVLIQVSVHYIESKKSSSEVLS
LALNKLTNGGHEIPPNFCELFTMVFLTMQIFLRYPKGVVKHHELRKCLMD
DLNLTEEYVEDICKVLLNHRDVLSKNFSDTKMDRVKMSKLQWRINISLSL
NTVQIDKPTIVLHFKLQNKEYRTLELPLSMFQQVRYNIALLLNELQSLQS
RLALKASFLDH
BO25182.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:00:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LSm-4-PC | 205 | CG33677-PC | 1..205 | 1..205 | 1039 | 100 | Plus |
LSm-4-PB | 205 | CG33677-PB | 1..205 | 1..205 | 1039 | 100 | Plus |