BO25223.complete Sequence
2011 bp assembled on 2010-07-15
GenBank Submission: KX794628
> BO25223.complete
GAAGTTATCAGTCGACATGACTTTTACGTATAAGGAACTCATAGATGTTG
CCATTGGGTCCCCGGAATCAGGACACGTTAACTTTTACGCTTTGCATGTC
CTGCTCACGTGCTTTGCCCAGCGATTGGAGGTCCTCGATGAGGTTGTCGA
GCAGGAAGACTATATGGTGGCCAATGTGCGCTTGCAAAGCAGTTTACTGA
CCTTGGGTAACACCTCGAAGTTCCGTCTTTTCGCCGGTGCGGATGCCGAG
GAGGGAGCAGCAGCCGAGCCGGCGGCAGAGCCCCCAGCCGAGGAGGCAGA
GGCACCCCCTGCGCCAGTCGAAGAGCCTCCCGCAGCGGATCCAGCACCAG
AGCCTGCTCCAGAACCTGCTCCAGAGCCTGCTGCAGAGGAACCTGCCCCA
GCGGAGCCAGTCCCAGAAGAAGCAGCTCCTGCGGAGGCTGCCGCACCATC
TCCAGAACCAGTGGGTTCCAACCATGAACCAACTCCATCTGCAACTCCGG
CTCCCGAGGAACATCCTCCTTCTGAGCCCGAGGCAGATACCTCAAAAGCA
CCAATGGATGTGCCTGCCGAGGCCAAGGGAGAGGAGCTGGCACCGCAGGC
CTCACGGGTCTCCTCGAGATCCTCCGGTCGCGACAAGTCGCACAGTCAAA
CGGACGGATCTCTTACCAATAATCTCTTGCGTCTCGAAAGACGCCTCTCC
AAGATTGAACTGCAGAAGGAACAGGCCACAATGGAGGTTCAGCAGTTTGT
GAGCAATCTCACCAGCCAGCTGAAGATCACGATGGAGCAGGTGAACAATA
TGACCCACTTGTTGATCGATCGCAAGCCGAACCCGCAGAGGTTTCGGTTA
CTCCGTCACATAGCCAAGCAGTTGAGGGTCCTGATGGTGACGACTGGTGA
TGAGGTTTCTGTGAGTTGGTCGAGTGGGGATATAGTGGACGGTGTCGAAG
AGGAGGGCCTGTCAGAGGAGGAGGTCCCAGTGGAGTCTAGTGCGCCCACG
GAGGTGGAGAAGCCTGAGGAAGAGGAGGAACTTGAATTGGAACAGCCCCT
TTGCTATTCGCCGGAGAAAATGCTTACTGAGCTTCTAGACCTCAAGTCGC
AATTCTGTGCTCTGACCAACAAGGTAAATGAACTCGCTGCAGCCTTGCTG
AAACAGGACTCCCAGAGACTGATGGACCAGATGAAGGATCTCTCGGAAAC
GGTGCGGGATATTAAGCTCTACATGGCCAGCAACAAGGAGGCTACCAATG
GCATGATGACTCGCCTCAATGACTGCGTATACCAGATACAAGTCCTAAAG
AAATCGGCATCCCATTTGGATGAGGTGAAGATTGACAAGACGGAGGTGGA
GCTTTTGTTGGCCGAAAAGGTTGACTTCCAGCAGTTGGCCACTAAAGTGT
CCCTGGAGCAACTGGAGGAGTACAAGGCCAGGTTGGAGCAGATGTTCTGC
GAGGTGCGCCACATTGTGAGCTTGAACGAGAAGAACGTCCTGCAGATCAT
CGACAATCTGCGAATGACACTGGGCATCGACGCATTGGAGCTAAGTCTCA
AGGACTTCCGGGAGATGATCGAGCGGCGGGTGCAGATTATAGCCGAGGCC
CTCCAGAAGTACATGGAGATGACCAACGATGATTGTGCCGCAGCTGCCGG
AAGAGTGAAGGTCATGCAGGATCTGGCCTGCTTGGCCTGTGACACCACCT
GTGTAATGCGAACTGTGGAGCGATCCAAGGTGCCCTCGCTGCCCAATGCT
AAGGGTTCCACCGGCCTGGGTCCCATTGTCACCTACGAACTGGGCCAGAT
CCGCAAGTCGGGCATCATGGGATACTATCGCAAGGACGAGTTCCCACACT
CCACCAGTGCCTGGACTAAAGGAGCCTCGGGTGTTCCCATGGTCAAGTGC
ACTCCGCGTCACGCGGGCGGAAGTCACACCACCCACACCGCGGATGAGCA
CATGCAGAAGGTCATTCTGTCAAAGAAGACCAGCGGTTGGACAGCAAGCT
TTCTAGACCAT
BO25223.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:42:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10869-RA | 1980 | CG10869-PA | 1..1977 | 17..1993 | 9885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:42:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10869-RA | 2227 | CG10869-RA | 120..2100 | 13..1993 | 9890 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:42:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1584993..1586788 | 1993..198 | 8980 | 100 | Minus |
| 2L | 23513712 | 2L | 1586852..1587036 | 197..13 | 910 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:42:27 has no hits.
BO25223.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:48:17 Download gff for
BO25223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10869-RA | 124..2100 | 17..1995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:36 Download gff for
BO25223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10869-RA | 124..2100 | 17..1995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:35:12 Download gff for
BO25223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10869-RA | 124..2100 | 17..1995 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:35:12 Download gff for
BO25223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1584991..1586788 | 198..1995 | 99 | <- | Minus |
| 2L | 1586852..1587032 | 17..197 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:36 Download gff for
BO25223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1584991..1586788 | 198..1995 | 99 | <- | Minus |
| arm_2L | 1586852..1587032 | 17..197 | 100 | | Minus |
BO25223.pep Sequence
Translation from 16 to 2011
> BO25223.pep
MTFTYKELIDVAIGSPESGHVNFYALHVLLTCFAQRLEVLDEVVEQEDYM
VANVRLQSSLLTLGNTSKFRLFAGADAEEGAAAEPAAEPPAEEAEAPPAP
VEEPPAADPAPEPAPEPAPEPAAEEPAPAEPVPEEAAPAEAAAPSPEPVG
SNHEPTPSATPAPEEHPPSEPEADTSKAPMDVPAEAKGEELAPQASRVSS
RSSGRDKSHSQTDGSLTNNLLRLERRLSKIELQKEQATMEVQQFVSNLTS
QLKITMEQVNNMTHLLIDRKPNPQRFRLLRHIAKQLRVLMVTTGDEVSVS
WSSGDIVDGVEEEGLSEEEVPVESSAPTEVEKPEEEEELELEQPLCYSPE
KMLTELLDLKSQFCALTNKVNELAAALLKQDSQRLMDQMKDLSETVRDIK
LYMASNKEATNGMMTRLNDCVYQIQVLKKSASHLDEVKIDKTEVELLLAE
KVDFQQLATKVSLEQLEEYKARLEQMFCEVRHIVSLNEKNVLQIIDNLRM
TLGIDALELSLKDFREMIERRVQIIAEALQKYMEMTNDDCAAAAGRVKVM
QDLACLACDTTCVMRTVERSKVPSLPNAKGSTGLGPIVTYELGQIRKSGI
MGYYRKDEFPHSTSAWTKGASGVPMVKCTPRHAGGSHTTHTADEHMQKVI
LSKKTSGWTASFLDH
BO25223.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:25:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10869-PA | 659 | CG10869-PA | 1..659 | 1..659 | 3355 | 100 | Plus |
| CG10014-PA | 421 | CG10014-PA | 335..418 | 78..155 | 184 | 52.4 | Plus |
| CG18130-PA | 706 | CG18130-PA | 597..705 | 75..192 | 173 | 44.6 | Plus |
| CG5514-PC | 1109 | CG5514-PC | 374..499 | 77..195 | 164 | 36.8 | Plus |
| CG5514-PA | 1109 | CG5514-PA | 374..499 | 77..195 | 164 | 36.8 | Plus |
| CG10014-PA | 421 | CG10014-PA | 322..419 | 70..173 | 160 | 46.7 | Plus |
