BO25230.complete Sequence
1480 bp assembled on 2010-06-09
GenBank Submission: KX798574
> BO25230.complete
GAAGTTATCAGTCGACATGACGGAACGACAGCCGTTGCTCCTCCAGAGCG
ATGCCTCTGACTACGAGGGCAGTCGAGGATCGGCAGCACGACCCGTGCGC
AGCTCTCCGCCGGACAACACTCTCGTCAACGTGCACAGCGAGGACAGCTT
AGCAGCCTCTGGATCGGGAGATGATGAAATTGGATCGACGGATAAGTCCT
ATAACCCCACCCATCATCGCGACCTGGAGCATCCGACGTCCAACTTCGAT
ACCCTGGTTCATCTGCTGAAGGGCAACATTGGTACGGGCATTCTGGCAAT
GCCGGATGCCTTTAAGAACGCCGGACTTTATGTGGGACTCTTTGGCACAA
TGATCATGGGAGCCATCTGCACCCACTGCATGCACATGCTGGTCAACTGC
TCCCACGAGCTGTGCCGGAGATTCCAGCAGCCATCGTTAGATTTCTCGGA
GGTGGCATACTGCAGTTTTGAGTCGGGACCTTTGGGACTAAGACGATACT
CCATGTTGGCTCGACGAATTGTTACCACGTTCTTGTTTATCACGCAAATC
GGTTTCTGCTGCGTCTACTTCCTCTTTGTGGCGTTGAATATCAAGGACGT
TATGGATCACTACTACAAGATGCCTGTGCAGATTTACCTGCTTATAATGC
TTGGACCCATGATCCTGTTGAATCTGGTGCGGAATCTGAAGTATTTGACA
CCCGTTTCGCTGGTTGCCGCCCTGCTCACAGTTGCCGGACTGGCCATTAC
ATTCTCGTACATGCTGGTGGATCTGCCGGATGTGCACACGGTCAAGCCGG
TGGCCACTTGGGCGACGTTGCCTCTATATTTTGGAACCGCCATCTACGCG
TTCGAGGGAATTGGTGTTGTCCTGCCCTTGGAGAACAATATGCGCACACC
CGAGGACTTTGGCGGCACCACAGGTGTCCTCAACACGGGCATGGTGATCG
TGGCCTGCTTGTACACAGCTGTCGGGTTCTTCGGCTACCTGAAGTACGGC
GAACACGTGGAGGGCAGCATTACCCTAAATCTGCCGCAAGGCGACACACT
TTCCCAGTTGGTGCGGATTTCAATGGCGGTGGCCATCTTCCTCTCGTATA
CGCTTCAGTTTTATGTGCCTGTGAACATCGTGGAACCCTTTGTGCGAAGT
CATTTCGATACAACGAGGGCCAAGGATTTGTCAGCAACTGTGCTGCGAGT
TGTTCTGGTCACTTTTACCTTCCTGCTGGCCACCTGTATTCCCAATCTAG
GCTCCATTATCTCGCTGGTAGGAGCCGTCAGCAGCTCAGCTTTGGCCCTA
ATTGCACCACCCATAATTGAAGTTATTACATTTTACAACGTTGGCTATGG
ACGCTTCAATTGGATGCTATGGAAGGACGTTTTAATCCTGATCTTTGGAC
TCTGTGGCTTTGTGTTTGGCACCTGGGCCAGCTTAGCTCAAATCCTGAAC
GACAGAACCCACGCAAGCTTTCTAGACCAT
BO25230.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:52:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13384-RL | 1449 | CG13384-PL | 1..1446 | 17..1462 | 7170 | 99.7 | Plus |
| CG13384-RK | 1449 | CG13384-PK | 1..1446 | 17..1462 | 7170 | 99.7 | Plus |
| CG13384-RC | 1515 | CG13384-PC | 67..1512 | 17..1462 | 7170 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13384-RL | 2226 | CG13384-RL | 109..1554 | 17..1462 | 7170 | 99.7 | Plus |
| CG13384-RK | 2484 | CG13384-RK | 367..1812 | 17..1462 | 7170 | 99.7 | Plus |
| CG13384-RC | 2430 | CG13384-RC | 313..1758 | 17..1462 | 7170 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8386482..8387378 | 151..1047 | 4455 | 99.8 | Plus |
| 2L | 23513712 | 2L | 8387891..8388132 | 1221..1462 | 1195 | 99.6 | Plus |
| 2L | 23513712 | 2L | 8387659..8387831 | 1048..1220 | 850 | 99.4 | Plus |
| 2L | 23513712 | 2L | 8386247..8386385 | 17..155 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:52:33 has no hits.
BO25230.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-09 11:57:37 Download gff for
BO25230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13384-RC | 301..1746 | 17..1464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:29:27 Download gff for
BO25230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13384-RC | 313..1758 | 17..1464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:37:51 Download gff for
BO25230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13384-RC | 313..1758 | 17..1464 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:37:51 Download gff for
BO25230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8386247..8386385 | 17..155 | 100 | -> | Plus |
| 2L | 8387891..8388132 | 1221..1464 | 98 | | Plus |
| 2L | 8386487..8387378 | 156..1047 | 99 | -> | Plus |
| 2L | 8387659..8387831 | 1048..1220 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:29:27 Download gff for
BO25230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8386247..8386385 | 17..155 | 100 | -> | Plus |
| arm_2L | 8386487..8387378 | 156..1047 | 99 | -> | Plus |
| arm_2L | 8387659..8387831 | 1048..1220 | 99 | -> | Plus |
| arm_2L | 8387891..8388132 | 1221..1464 | 98 | | Plus |
BO25230.pep Sequence
Translation from 16 to 1480
> BO25230.pep
MTERQPLLLQSDASDYEGSRGSAARPVRSSPPDNTLVNVHSEDSLAASGS
GDDEIGSTDKSYNPTHHRDLEHPTSNFDTLVHLLKGNIGTGILAMPDAFK
NAGLYVGLFGTMIMGAICTHCMHMLVNCSHELCRRFQQPSLDFSEVAYCS
FESGPLGLRRYSMLARRIVTTFLFITQIGFCCVYFLFVALNIKDVMDHYY
KMPVQIYLLIMLGPMILLNLVRNLKYLTPVSLVAALLTVAGLAITFSYML
VDLPDVHTVKPVATWATLPLYFGTAIYAFEGIGVVLPLENNMRTPEDFGG
TTGVLNTGMVIVACLYTAVGFFGYLKYGEHVEGSITLNLPQGDTLSQLVR
ISMAVAIFLSYTLQFYVPVNIVEPFVRSHFDTTRAKDLSATVLRVVLVTF
TFLLATCIPNLGSIISLVGAVSSSALALIAPPIIEVITFYNVGYGRFNWM
LWKDVLILIFGLCGFVFGTWASLAQILNDRTHASFLDH
BO25230.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13384-PL | 482 | CG13384-PL | 1..482 | 1..482 | 2501 | 100 | Plus |
| CG13384-PK | 482 | CG13384-PK | 1..482 | 1..482 | 2501 | 100 | Plus |
| CG13384-PC | 504 | CG13384-PC | 23..504 | 1..482 | 2501 | 100 | Plus |
| CG13384-PG | 482 | CG13384-PG | 1..482 | 1..482 | 2501 | 100 | Plus |
| CG13384-PI | 483 | CG13384-PI | 1..483 | 1..482 | 2489 | 99.8 | Plus |
