Clone BO25231 Report

Search the DGRC for BO25231

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:252
Well:31
Vector:pDNR-Dual
Associated Gene/Transcriptap-RC
Protein status:BO25231.pep: Imported from assembly
Sequenced Size:1438

Clone Sequence Records

BO25231.complete Sequence

1438 bp assembled on 2012-04-24

GenBank Submission: KX799951

> BO25231.complete
GAAGTTATCAGTCGACATGGGCGTCTGCACCGAGGAGCGCCCTGTGATGC
ATTGGCAGAGCGCAAGATTTCTTGGGCCCGGCGCAAGGGAGAAAAGTCCA
ACACCACCTGTAGCACATCAAGGGAGCAATCAATGTGGCAGTGCTGCAGG
TGCAAATAACAATCACCCATTGTTCCGCGCGTGCTCCTCATCCTCGTGTC
CAGATATTTGTGATCATAGTACAAAGCCATTTGGCAACGCTTACGGCACC
GAGTCATTTAGAAGCTACGAAACAGCCGATCGTGCTACCTTTGAGGACTC
AGCCGCCAAATTCTCCATCAGCCGCAGTCGAACAGACTGCACGGAGGTCA
GCGACGAGACGACGTCGGGCATATCATTCAAGACCGAACCCTTCGGACCG
CCCAGCAGTCCCGAGTCCACAAGCGATAGCAAAATAACGCGCAACCTCGA
CGACTGCTCCGGCTGCGGACGTCAGATACAGGATCGCTTCTACCTCTCCG
CTGTGGAAAAACGGTGGCATGCAAGTTGCCTACAGTGCTACGCCTGTCGG
CAGCCGCTGGAACGGGAATCCTCATGCTACTCACGTGACGGCAACATTTA
TTGCAAAAACGATTATTATAGTTTTTTTGGTACTCGCCGATGCTCGCGCT
GCCTGGCCTCCATCAGCTCCAACGAGCTGGTCATGCGCGCCAGAAATCTT
GTTTTTCACGTCAACTGCTTCTGCTGCACTGTCTGCCACACGCCACTGAC
AAAGGGAGACCAGTACGGCATCATCGACGCCCTCATCTACTGCAGGACCC
ACTACAGCATAGCCAGGGAGGGGGATACCGCCTCATCCAGTATGAGCGCC
ACCTACCCGTACAGCGCCCAGTTCGGCTCACCCCACAACGACTCCTCGAG
CCCGCACTCGGACCCTAGTCGGAGCATTGTTCCTACGGGCATCTTTGTGC
CCGCGTCCCACGTAATCAACGGACTGCCGCAGCCAGCTCGTCAAAAGGGC
AGGCCCCGCAAGCGCAAGCCCAAGGACATCGAGGCGTTCACCGCTAACAT
AGATCTCAACACTGAGTACGTGGACTTTGGCCGAGGCTCGCACCTAAGCT
CCTCGTCGCGCACCAAACGAATGCGAACCTCGTTTAAGCATCACCAGCTG
CGTACCATGAAGTCCTACTTTGCCATTAATCATAACCCTGATGCAAAGGA
TCTAAAACAATTGTCACAGAAAACTGGTTTACCAAAGAGGGTCCTACAGG
TCTGGTTTCAAAATGCAAGGGCCAAATGGCGCCGCATGATGATGAAGCAG
GATGGCAGCGGCCTGCTGGAGAAGGGCGAAGGCGCTCTGGACCTCGACAG
CATCTCCGTGCACAGTCCTACGTCGTTTATATTGGGAGGACCGAACAGCA
CACCGCCACTTAACTTGGACGCAAGCTTTCTAGACCAT

BO25231.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
ap-RC 1407 CG8376-PC 1..1404 17..1420 7020 100 Plus
ap-RA 1410 CG8376-PA 1..1407 17..1420 6955 99.8 Plus
ap-RE 741 CG8376-PE 1..738 683..1420 3690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
ap-RC 3089 CG8376-RC 972..2377 15..1420 7030 100 Plus
ap-RA 4114 CG8376-RA 972..2380 15..1420 6965 99.8 Plus
ap-RE 2149 CG8376-RE 73..1437 56..1420 6825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5708611..5708869 1052..794 1295 100 Minus
2R 25286936 2R 5717281..5717500 482..263 1100 100 Minus
2R 25286936 2R 5717555..5717764 264..55 1050 100 Minus
2R 25286936 2R 5708181..5708381 1251..1051 1005 100 Minus
2R 25286936 2R 5708925..5709105 796..616 890 99.4 Minus
2R 25286936 2R 5707936..5708108 1420..1248 865 100 Minus
2R 25286936 2R 5716649..5716790 621..480 710 100 Minus
2R 25286936 2R 5725821..5725861 55..15 205 100 Minus
Blast to na_te.dros performed on 2014-11-28 07:49:06 has no hits.

BO25231.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-06 12:07:31 Download gff for BO25231.complete
Subject Subject Range Query Range Percent Splice Strand
ap-RA 972..2378 17..1422 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:01:45 Download gff for BO25231.complete
Subject Subject Range Query Range Percent Splice Strand
ap-RC 972..2375 17..1422 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:27 Download gff for BO25231.complete
Subject Subject Range Query Range Percent Splice Strand
ap-RC 974..2377 17..1422 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:04:33 Download gff for BO25231.complete
Subject Subject Range Query Range Percent Splice Strand
ap-RC 974..2377 17..1422 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:04:33 Download gff for BO25231.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5717282..5717498 265..481 100 <- Minus
2R 5717555..5717763 56..264 100 <- Minus
2R 5725821..5725859 17..55 100   Minus
2R 5716649..5716788 482..621 100 <- Minus
2R 5707934..5708106 1250..1422 98 <- Minus
2R 5708183..5708379 1053..1249 100 <- Minus
2R 5708611..5708867 796..1052 100 <- Minus
2R 5708926..5709099 622..795 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:27 Download gff for BO25231.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1604787..1605003 265..481 100 <- Minus
arm_2R 1605060..1605268 56..264 100 <- Minus
arm_2R 1613326..1613364 17..55 100   Minus
arm_2R 1595439..1595611 1250..1422 98 <- Minus
arm_2R 1595688..1595884 1053..1249 100 <- Minus
arm_2R 1596116..1596372 796..1052 100 <- Minus
arm_2R 1596431..1596604 622..795 100 <- Minus
arm_2R 1604154..1604293 482..621 100 <- Minus

BO25231.pep Sequence

Translation from 16 to 1438

> BO25231.pep
MGVCTEERPVMHWQSARFLGPGAREKSPTPPVAHQGSNQCGSAAGANNNH
PLFRACSSSSCPDICDHSTKPFGNAYGTESFRSYETADRATFEDSAAKFS
ISRSRTDCTEVSDETTSGISFKTEPFGPPSSPESTSDSKITRNLDDCSGC
GRQIQDRFYLSAVEKRWHASCLQCYACRQPLERESSCYSRDGNIYCKNDY
YSFFGTRRCSRCLASISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQY
GIIDALIYCRTHYSIAREGDTASSSMSATYPYSAQFGSPHNDSSSPHSDP
SRSIVPTGIFVPASHVINGLPQPARQKGRPRKRKPKDIEAFTANIDLNTE
YVDFGRGSHLSSSSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLS
QKTGLPKRVLQVWFQNARAKWRRMMMKQDGSGLLEKGEGALDLDSISVHS
PTSFILGGPNSTPPLNLDASFLDH

BO25231.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:10
Subject Length Description Subject Range Query Range Score Percent Strand
ap-PC 468 CG8376-PC 1..468 1..468 2525 100 Plus
ap-PA 469 CG8376-PA 1..469 1..468 2513 99.8 Plus
ap-PE 246 CG8376-PE 1..246 223..468 1311 100 Plus
ap-PB 246 CG8376-PB 1..246 223..468 1311 100 Plus
tup-PB 465 CG10619-PB 49..331 142..451 391 31.5 Plus