BO25249.complete Sequence
2158 bp assembled on 2010-12-13
GenBank Submission: KX796659
> BO25249.complete
GAAGTTATCAGTCGACATGACCAAGGTATCAGGGACGAAGGCAAAAGACG
ATGGCGAGCCAGCCACTAAGCGCGAACGCAAGGAGATGCATTCGCACAAG
AAAGATCGCAGGGAGCGATTGGAACGCATGGAGCGCATGGACCGCAGGGA
CCGCAGAGACCGCAGAGAACGCAGGGACCGCAAGGACCGCAAGGACCGCA
AGGACCGCAAAGAGCCAGCCAGAGGCCCCTCCTCCCGGATGAGGAACATC
TCACCAATTCACTCGAATGCTTCGGAGAGCACTGAAGCAGACTGCAGCGA
CTCCAGCTACTCGGACTCGAGCTACAGCACCTCTGGATCGTCCAGCTGCA
CAAGCTTTTTGAGCTCCACCAGCAGCAGCTACTCGTCGAGCGACAGCGAG
CCAGAGCCAGAAGGATCCGTCAAAAAGTTTGAGCGCACCAAGCACTCGTG
TTGCCATTACCGACACCATCGTCGCCATAGGCGCCACCAAAACCCTCGTC
ATTCGCACCGTCGCCGGCACGTCACCCGTTGCCATCACTCGAATCACGGA
CGCTTTTCCAAGCGTTTGGCTAAAAAGAGTCGTCGTGGCATATCCGCCGC
CAAGGGAGCTATCACGGTTAAGGAGGAGGTTGTCGAAAAAATTTCTCCTG
CTTCAGCCCCTGGGGTCATTCAGATACCGGCACCCATTCCGCTGCCCGTG
CCGGCACCCATTCCGGCTGTCCTGTCTGTTTCGGAGGCACAACCGCGTTC
CCACTCCCGTTCGCAATCGCACTCCCATCTCCATAGCCATTCCAGCTCCC
ATAACAATCCCCACCCGCAACCCGTTCCGGCCCCTGTTCCGGTACCAATT
CCTGCTCCGATCGCCATGCCAACTCCTATGAGGGAGCCAAGCAGCGTGGT
ATTGGACCGCAAGTCTCGTAGACGCAGCTCCACCTCGCAGAACATCGCCT
CGGCCGCCAGCAGTTCTATCGGCACCAACCAAGCCATCATCCAGTCTAGC
ACTATAACCATTACAAAGACGATTGCCAACGCCACTGGTATGGCCGAAAC
CAATTCAAGTGGCGGCGCTAGCATCTCCAGCACAAAAAATAAGGGGGACA
GCAGTACCGGCCAATCTTCAAAGACGGTTGTCACCAATAACGCGGGCAGC
AAGGCGGGTTACCAAGCCCCCAAGACTTCAGTGGCAAGCACATCTTCGAA
AGCGGTGGTCAGGTCTAACGCAAGCGCCAGTTCAGGCCACGGGAACCACA
CCAGTTCCAGCTCGAGTTTCACCCAGCTGCACTCCAGTGCCAGGCCCTCG
ACAGCCAAAGATCACGACAAGAGTCCTCAGCAGAACCGCTCAGGCAGCTC
AGGCCCCAAGGGCAAGTCGTCGAAGATCAACGATCCTCCACGTCGTGGCT
CTTCACCGTCTGCTGGTGCAGAACCTACTCGCCAAAAACAAAGCGTTCAA
AATCAAAATGGGCGGAATTGCAGCAGCCAGTGGAACCATCGGCGCGGTGA
AGGGGATGGAGAAGGAGCAGAAGCAAGTGGACGGGGCTACAGAGCCGTGG
GTGAGGTAAACAAAGTGGCCTACAGAAACGGAAAGGACGCCTTCAAATTT
CGCCAACCCGTGCGCAATGTTCGCCTGCACATTAAGGGATTGACGCGTCA
GGTGACCAAGGAGCACATAACCGAGATATTTGGTCACTTCGGCGCCCTGA
CGGCAGTCGACTTTCCAATGGACCGTTTCCAAGGGCGCCAGGGACGCGGA
TACGCCTTTGTGGAGTACTCACGTCCAGAGGACTGCGCCAGTGCCATCAA
GCATATGAACGGCGGGCAGATCGATGGGAAGCTGATCAGGGTGTCCGCCT
TTCAGGAAAGCATGCTAAAGGCGCCGTGGCGTCAATACCGACGTTACTCG
CCAGTCAACCGGCGCCAGAGCCAGCGTACGTTGTCCCGCTCGGGCTCGTC
GTCACGCTCTCGATCGCCGTCCCGCTCTGCGTCCGGCTCGGAATACGGGT
CGCGGTCCTCCCACTCTCGCGTCCGCTCTATGTCGGGATCGCGCTATTCT
CGGCGCAACCGTTCGCAATCGTGCTCCTACACTCGCTCATCGCCGCGCTA
CGGGCATTACCATCGCCCTAGACGCGATTCGCGTTCGCCCGCAAGCTTTC
TAGACCAT
BO25249.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:37:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34334-RA | 2127 | CG34334-PA | 1..2124 | 17..2140 | 10620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34334-RA | 2556 | CG34334-RA | 205..2328 | 17..2140 | 10620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22873016..22875139 | 17..2140 | 10620 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 15:37:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\worf | 4174 | Dmir\worf WORF 4174bp Derived from AY144572. | 803..859 | 821..877 | 132 | 70.2 | Plus |
BO25249.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:54:47 Download gff for
BO25249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34334-RA | 205..2328 | 17..2142 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:33:52 Download gff for
BO25249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34334-RA | 205..2328 | 17..2142 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:13 Download gff for
BO25249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34334-RA | 205..2328 | 17..2142 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:13 Download gff for
BO25249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22873016..22875139 | 17..2142 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:33:52 Download gff for
BO25249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 22274852..22276975 | 17..2142 | 99 | | Plus |
BO25249.pep Sequence
Translation from 16 to 2158
> BO25249.pep
MTKVSGTKAKDDGEPATKRERKEMHSHKKDRRERLERMERMDRRDRRDRR
ERRDRKDRKDRKDRKEPARGPSSRMRNISPIHSNASESTEADCSDSSYSD
SSYSTSGSSSCTSFLSSTSSSYSSSDSEPEPEGSVKKFERTKHSCCHYRH
HRRHRRHQNPRHSHRRRHVTRCHHSNHGRFSKRLAKKSRRGISAAKGAIT
VKEEVVEKISPASAPGVIQIPAPIPLPVPAPIPAVLSVSEAQPRSHSRSQ
SHSHLHSHSSSHNNPHPQPVPAPVPVPIPAPIAMPTPMREPSSVVLDRKS
RRRSSTSQNIASAASSSIGTNQAIIQSSTITITKTIANATGMAETNSSGG
ASISSTKNKGDSSTGQSSKTVVTNNAGSKAGYQAPKTSVASTSSKAVVRS
NASASSGHGNHTSSSSSFTQLHSSARPSTAKDHDKSPQQNRSGSSGPKGK
SSKINDPPRRGSSPSAGAEPTRQKQSVQNQNGRNCSSQWNHRRGEGDGEG
AEASGRGYRAVGEVNKVAYRNGKDAFKFRQPVRNVRLHIKGLTRQVTKEH
ITEIFGHFGALTAVDFPMDRFQGRQGRGYAFVEYSRPEDCASAIKHMNGG
QIDGKLIRVSAFQESMLKAPWRQYRRYSPVNRRQSQRTLSRSGSSSRSRS
PSRSASGSEYGSRSSHSRVRSMSGSRYSRRNRSQSCSYTRSSPRYGHYHR
PRRDSRSPASFLDH
BO25249.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:46:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34334-PA | 708 | CG34334-PA | 1..708 | 1..708 | 3668 | 100 | Plus |
| RnpS1-PA | 374 | CG16788-PA | 1..374 | 342..679 | 365 | 30.6 | Plus |
| Mur89F-PC | 2158 | CG4090-PC | 286..767 | 72..534 | 185 | 21.8 | Plus |
| Mur89F-PB | 2159 | CG4090-PB | 286..767 | 72..534 | 185 | 21.8 | Plus |
| SC35-PD | 195 | CG5442-PD | 23..176 | 535..696 | 155 | 32.5 | Plus |
