BO25250.complete Sequence
1093 bp assembled on 2010-06-09
GenBank Submission: KX797116
> BO25250.complete
GAAGTTATCAGTCGACATGGACTGCTGCCTATCGGACCAGGCTTGTGAGG
AAAGGCGTATCAGCAGGGAAATTGATAAGTTCCTGAAAGCGGAAAAGAAG
AAAGCTCGACGTGAACTTAAGCTATTGGTCCTGGGCACAGGTGAATCGGG
CAAGACCACATTCATCAAACAAATGCGCATCATTCACGGCAAAGGATTTT
TGGACAAGGAGAGGAAGCAGTTCACCAAAAATGTTTTCCAAAACATATTC
ATGGCCATACAGTCGATGATCAGTGCAATGGATACTCTGCGAATTCCCTA
CGGTCAGCAGGAGCATAGTAAACTTGCCGATCTGGTGAAGAGCATCGATT
ACAAGACAGTTACCAGACTGGAGGCGCCCTACTTGAATGCCATCAAAACT
CTTTGGAAAGATGCTGGCATCAAGGAGTGCTACAATCGTCGTAGGGAATA
TCAGCTGACTGATTCAACTGAATACTTTTTGAATGACATAGCGCGAATTG
AACGGAGTGATTACCAGGCCACTGATCAGGACATTCTTCATGTTCGAGCG
CCAACAACCAATATTGTTGAGTATCCCTTCAATTTGGACGGTTTTCTGAT
AAGATTGGTGGACGTCGCTGGTCAGCGAACGGAGAGAAGAAAGTGGATTC
ATTGTTTTTCCAATGTGACATCAATTATGTTTTTGGTTGCCATGTCCGAG
TTTGATCTATCCTTGGCTGAATCGGAGAATGATAATCGTATGAAGGAATC
TAAAGCTTTATTTCACAATATAATATCGTTTTCATGGTTTCAACACTCGT
CCGTTATTCTGTTTCTAAACAAGGAGGATTTATTTAAAAAGAAAATATTG
TCAACGCATTTGGCAGACTATTTTCCTGAATATAATGGTCCAAAGAAGGA
TGCTAAGGCGGCCCGAGAATTCATATTGTACATGTTTACTAGCGTGAATC
CTGATCCTTACAAGTGCATCTATCCTCATTTCACCGTTGCTACAAATACT
GAAAATATTAAGTTCGTGTTCACTGCTGTCAAGGACACAATTCTGGAATT
GCATTTAAGTGAAACTAATTTGCTGGCAAGCTTTCTAGACCAT
BO25250.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:52:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17760-RB | 1062 | CG17760-PB | 1..1059 | 17..1075 | 5295 | 100 | Plus |
| Galphaq-RD | 1062 | CG17759-PD | 115..885 | 131..901 | 1410 | 78.9 | Plus |
| CG30054-RE | 1062 | CG30054-PE | 93..1033 | 109..1049 | 1255 | 75.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17760-RB | 1535 | CG17760-RB | 375..1434 | 16..1075 | 5300 | 100 | Plus |
| Galphaq-RD | 1615 | CG17759-RD | 548..1318 | 131..901 | 1410 | 78.9 | Plus |
| CG30054-RE | 1062 | CG30054-RE | 93..1033 | 109..1049 | 1255 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12626983..12627168 | 134..319 | 930 | 100 | Plus |
| 2R | 25286936 | 2R | 12627971..12628126 | 734..889 | 780 | 100 | Plus |
| 2R | 25286936 | 2R | 12627237..12627391 | 320..474 | 775 | 100 | Plus |
| 2R | 25286936 | 2R | 12627785..12627916 | 602..733 | 660 | 100 | Plus |
| 2R | 25286936 | 2R | 12627598..12627726 | 475..603 | 645 | 100 | Plus |
| 2R | 25286936 | 2R | 12626798..12626917 | 16..135 | 600 | 100 | Plus |
| 2R | 25286936 | 2R | 12628193..12628301 | 887..995 | 545 | 100 | Plus |
| 2R | 25286936 | 2R | 12624150..12624303 | 321..474 | 500 | 88.3 | Plus |
| 2R | 25286936 | 2R | 12616788..12616933 | 321..466 | 460 | 87.7 | Plus |
| 2R | 25286936 | 2R | 12628439..12628518 | 996..1075 | 400 | 100 | Plus |
| 2R | 25286936 | 2R | 12617987..12618142 | 734..889 | 300 | 79.5 | Plus |
| 2R | 25286936 | 2R | 12617793..12617923 | 602..732 | 295 | 81.7 | Plus |
| 2R | 25286936 | 2R | 12624565..12624645 | 606..686 | 225 | 85.2 | Plus |
| 2R | 25286936 | 2R | 12623919..12624086 | 152..319 | 210 | 75 | Plus |
| 2R | 25286936 | 2R | 12624754..12624909 | 734..889 | 195 | 75 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:52:49 has no hits.
BO25250.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-09 11:57:42 Download gff for
BO25250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17760-RB | 351..1409 | 17..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:29:31 Download gff for
BO25250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17760-RB | 376..1434 | 17..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:37:55 Download gff for
BO25250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17760-RB | 376..1434 | 17..1077 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:37:55 Download gff for
BO25250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12626799..12626916 | 17..134 | 100 | -> | Plus |
| 2R | 12626984..12627168 | 135..319 | 100 | -> | Plus |
| 2R | 12627237..12627391 | 320..474 | 100 | -> | Plus |
| 2R | 12627598..12627726 | 475..603 | 100 | -> | Plus |
| 2R | 12627787..12627916 | 604..733 | 100 | -> | Plus |
| 2R | 12627971..12628124 | 734..887 | 100 | -> | Plus |
| 2R | 12628194..12628301 | 888..995 | 100 | -> | Plus |
| 2R | 12628439..12628518 | 996..1077 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:29:31 Download gff for
BO25250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8515944..8516023 | 996..1077 | 97 | | Plus |
| arm_2R | 8515103..8515231 | 475..603 | 100 | -> | Plus |
| arm_2R | 8515292..8515421 | 604..733 | 100 | -> | Plus |
| arm_2R | 8515476..8515629 | 734..887 | 100 | -> | Plus |
| arm_2R | 8515699..8515806 | 888..995 | 100 | -> | Plus |
| arm_2R | 8514304..8514421 | 17..134 | 100 | -> | Plus |
| arm_2R | 8514489..8514673 | 135..319 | 100 | -> | Plus |
| arm_2R | 8514742..8514896 | 320..474 | 100 | -> | Plus |
BO25250.pep Sequence
Translation from 16 to 1093
> BO25250.pep
MDCCLSDQACEERRISREIDKFLKAEKKKARRELKLLVLGTGESGKTTFI
KQMRIIHGKGFLDKERKQFTKNVFQNIFMAIQSMISAMDTLRIPYGQQEH
SKLADLVKSIDYKTVTRLEAPYLNAIKTLWKDAGIKECYNRRREYQLTDS
TEYFLNDIARIERSDYQATDQDILHVRAPTTNIVEYPFNLDGFLIRLVDV
AGQRTERRKWIHCFSNVTSIMFLVAMSEFDLSLAESENDNRMKESKALFH
NIISFSWFQHSSVILFLNKEDLFKKKILSTHLADYFPEYNGPKKDAKAAR
EFILYMFTSVNPDPYKCIYPHFTVATNTENIKFVFTAVKDTILELHLSET
NLLASFLDH
BO25250.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17760-PB | 353 | CG17760-PB | 1..353 | 1..353 | 1830 | 100 | Plus |
| CG30054-PE | 353 | CG30054-PE | 1..352 | 1..352 | 1279 | 68.5 | Plus |
| Galphaq-PD | 353 | CG17759-PD | 1..352 | 1..352 | 1267 | 66.8 | Plus |
| Galphaq-PK | 353 | CG17759-PK | 1..353 | 1..353 | 1261 | 66.9 | Plus |
| Galphaq-PE | 353 | CG17759-PE | 1..353 | 1..353 | 1261 | 66.9 | Plus |
