Clone BO25251 Report

Search the DGRC for BO25251

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:252
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptMED10-RB
Protein status:BO25251.pep: Imported from assembly
Sequenced Size:433

Clone Sequence Records

BO25251.complete Sequence

433 bp assembled on 2012-04-24

GenBank Submission: KX799101

> BO25251.complete
GAAGTTATCAGTCGACATGTCTGCACCGCTAGAGAACCTTGAGACCCAGC
TAGAGATGTTCATCGAGAATGTTCGTCAGATCCGCATAATCGTAAGCGAT
TTTCAGCCACAGGGTCAAAATGTACTCAACCAGAAAATTAACAGCTTGGT
GACCGGCCTACAAGAGATCGACAAGCTGCGCTCCCAGGTGCAGGACGTCT
ATGTGCCATTTGAAGTGTTTTTTGACTACATCGACCAAGACAAGAATCCT
CAGCTGTACACCAAGGATTGCGTGGAGAAGGCACTGGCCAAGAACGAGGA
GGTCAAGGGCAAGATCGAGGGCCTGAAGAAGTTCAAAACGAATCTGCTGC
TGGAGCTGTATAAAACATTTCCCAATGAGATGAACAACTACCGCGCTTAT
CGCAAGGACTCCATGGCAAGCTTTCTAGACCAT

BO25251.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
MED10-RB 402 CG5057-PB 1..399 17..415 1995 100 Plus
MED10-RC 402 CG5057-PC 1..399 17..415 1995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
MED10-RB 597 CG5057-RB 119..517 17..415 1995 100 Plus
MED10-RC 638 CG5057-RC 119..517 17..415 1995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16232380..16232656 139..415 1385 100 Plus
3L 28110227 3L 16232202..16232323 17..138 610 100 Plus
Blast to na_te.dros performed on 2014-11-28 07:49:45 has no hits.

BO25251.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-06 12:07:33 Download gff for BO25251.complete
Subject Subject Range Query Range Percent Splice Strand
MED10-RA 174..566 17..417 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:01:46 Download gff for BO25251.complete
Subject Subject Range Query Range Percent Splice Strand
MED10-RB 174..572 17..417 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:30 Download gff for BO25251.complete
Subject Subject Range Query Range Percent Splice Strand
MED10-RC 119..517 17..417 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:04:45 Download gff for BO25251.complete
Subject Subject Range Query Range Percent Splice Strand
MED10-RC 119..517 17..417 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:04:45 Download gff for BO25251.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16232202..16232323 17..138 100 -> Plus
3L 16232380..16232656 139..417 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:30 Download gff for BO25251.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16225302..16225423 17..138 100 -> Plus
arm_3L 16225480..16225756 139..417 99   Plus

BO25251.pep Sequence

Translation from 16 to 433

> BO25251.pep
MSAPLENLETQLEMFIENVRQIRIIVSDFQPQGQNVLNQKINSLVTGLQE
IDKLRSQVQDVYVPFEVFFDYIDQDKNPQLYTKDCVEKALAKNEEVKGKI
EGLKKFKTNLLLELYKTFPNEMNNYRAYRKDSMASFLDH

BO25251.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:00
Subject Length Description Subject Range Query Range Score Percent Strand
MED10-PB 133 CG5057-PB 1..133 1..133 680 100 Plus
MED10-PC 133 CG5057-PC 1..133 1..133 680 100 Plus