BO25259.complete Sequence
1114 bp assembled on 2010-06-09
GenBank Submission: KX797065
> BO25259.complete
GAAGTTATCAGTCGACATGGCCAAGGATAATCTAACAGCAGTGCTGCACG
GCATTGAGGACATGCGATTGGAGCAACGTCCTATTCCAGAGATTGCTGAT
GATGAGGTTCTCCTGGCCATGGATAGTGTTGGCATTTGCGGCTCTGATGT
ACACTACCTTGCACACGGACGCATTGGCGACTTTGTGCTCACTAAGCCCA
TGATTATTGGCCACGAGTCCGCCGGCGTGGTGGCTAAGCTGGGCAAGAAG
GTGACCACACTGAAGGTCGGCGACCGCGTGGCCATCGAACCGGGCGTACC
CTGCCGTAAGTGCGACCATTGCAAGCAGGGCAAATACAACCTGTGCCCCG
GAATGGTCTTCTGTGCCACGCCCCCCTACGACGGCAACCTCACCCGCTAC
TACAAGCATGCGGCGGACTTCTGCTTCAAGCTGCCCGACCACGTCACCAT
GGAGGAGGGCGCCCTGCTCGAGCCTCTGTCTGTGGGCGTGCATGCCTGCA
AGCGGGCGGAGGTCACCCTGGGCTCAAAAGTTCTCATCCTGGGAGCAGGA
CCCATTGGCCTGGTCACTTTAATGGCTGCTCAAGCCATGGGTGCGTCTGA
GATCCTCATTACGGATCTTGTGCAGCAACGCCTCGATGTAGCTAAAGAGC
TAGGTGCAACTCACACCCTCCTGCTGAAACGGGATCAGACCGCCGAGGAG
ACGGCGGTGCTCGTCCAAAAAACGATGGGCGGTCAGCCGGACAAGTCCAT
CGACTGCTGTGGAGCAGAGAGCAGTGCCCGACTGGCCATCTTCGCCACTC
GTTCCGGTGGCATTGTGGTGGTGGTGGGCATGGGAGCAGCTGAGATCAAG
TTGCCCCTAATTAATGCCCTGGCCCGGGAAGTGGACATCCGCGGCGTCTT
CCGCTACTGCAATGACTATGCCGCTGCCCTGGCCCTTGTCGCCTCCGGAA
AGGTGAATGTTAAGCGTCTGGTGACCCACCATTTCGACATCAAGGAAACG
GCAAAGGCGTTTGAAACGTCACGAAAGGGACTGGGTGGTGCCATCAAGGT
CATGATCCACGTCCAGCCCAGAGACACCAACAATCCTCGCAAATTCGCAA
GCTTTCTAGACCAT
BO25259.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:53:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sodh-1-RB | 1083 | CG1982-PB | 1..1080 | 17..1096 | 5400 | 100 | Plus |
| Sodh-1-RA | 1083 | CG1982-PA | 1..1080 | 17..1096 | 5400 | 100 | Plus |
| Sodh-2-RA | 1083 | CG4649-PA | 13..1067 | 29..1083 | 2215 | 80.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sodh-1-RB | 1195 | CG1982-RB | 70..1149 | 17..1096 | 5400 | 100 | Plus |
| Sodh-1-RA | 1387 | CG1982-RA | 262..1341 | 17..1096 | 5400 | 100 | Plus |
| Sodh-2-RA | 1346 | CG4649-RA | 71..1138 | 16..1083 | 2220 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7053127..7053598 | 104..575 | 2360 | 100 | Plus |
| 3R | 32079331 | 3R | 7053862..7054082 | 574..794 | 1105 | 100 | Plus |
| 3R | 32079331 | 3R | 10876899..10877362 | 104..567 | 1090 | 82.3 | Plus |
| 3R | 32079331 | 3R | 7054315..7054495 | 916..1096 | 905 | 100 | Plus |
| 3R | 32079331 | 3R | 7054140..7054261 | 794..915 | 610 | 100 | Plus |
| 3R | 32079331 | 3R | 10877428..10877648 | 574..794 | 460 | 80.5 | Plus |
| 3R | 32079331 | 3R | 10877883..10878049 | 917..1083 | 295 | 78.4 | Plus |
| 3R | 32079331 | 3R | 7052596..7052650 | 17..71 | 275 | 100 | Plus |
| 3R | 32079331 | 3R | 10877702..10877823 | 794..915 | 235 | 79.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:53:11 has no hits.
BO25259.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-09 11:57:47 Download gff for
BO25259.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sodh-1-RA | 262..1341 | 17..1098 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:29:40 Download gff for
BO25259.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sodh-1-RA | 262..1341 | 17..1098 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:37:59 Download gff for
BO25259.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sodh-1-RA | 262..1341 | 17..1098 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:37:59 Download gff for
BO25259.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7054315..7054495 | 916..1098 | 98 | | Plus |
| 3R | 7053863..7054081 | 575..793 | 100 | -> | Plus |
| 3R | 7052596..7052649 | 17..70 | 100 | -> | Plus |
| 3R | 7052708..7052741 | 71..104 | 100 | -> | Plus |
| 3R | 7053128..7053597 | 105..574 | 100 | -> | Plus |
| 3R | 7054140..7054261 | 794..915 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:29:40 Download gff for
BO25259.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2879585..2879803 | 575..793 | 100 | -> | Plus |
| arm_3R | 2878318..2878371 | 17..70 | 100 | -> | Plus |
| arm_3R | 2878430..2878463 | 71..104 | 100 | -> | Plus |
| arm_3R | 2879862..2879983 | 794..915 | 100 | -> | Plus |
| arm_3R | 2878850..2879319 | 105..574 | 100 | -> | Plus |
| arm_3R | 2880037..2880217 | 916..1098 | 98 | | Plus |
BO25259.pep Sequence
Translation from 16 to 1114
> BO25259.pep
MAKDNLTAVLHGIEDMRLEQRPIPEIADDEVLLAMDSVGICGSDVHYLAH
GRIGDFVLTKPMIIGHESAGVVAKLGKKVTTLKVGDRVAIEPGVPCRKCD
HCKQGKYNLCPGMVFCATPPYDGNLTRYYKHAADFCFKLPDHVTMEEGAL
LEPLSVGVHACKRAEVTLGSKVLILGAGPIGLVTLMAAQAMGASEILITD
LVQQRLDVAKELGATHTLLLKRDQTAEETAVLVQKTMGGQPDKSIDCCGA
ESSARLAIFATRSGGIVVVVGMGAAEIKLPLINALAREVDIRGVFRYCND
YAAALALVASGKVNVKRLVTHHFDIKETAKAFETSRKGLGGAIKVMIHVQ
PRDTNNPRKFASFLDH
BO25259.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sodh-1-PB | 360 | CG1982-PB | 1..360 | 1..360 | 1853 | 100 | Plus |
| Sodh-1-PA | 360 | CG1982-PA | 1..360 | 1..360 | 1853 | 100 | Plus |
| Sodh-2-PA | 360 | CG4649-PA | 1..360 | 1..360 | 1688 | 90.3 | Plus |
| CG4836-PB | 1214 | CG4836-PB | 892..1205 | 24..343 | 423 | 31.5 | Plus |
| CG4836-PC | 1217 | CG4836-PC | 895..1208 | 24..343 | 423 | 31.5 | Plus |
