BO25260.complete Sequence
1480 bp assembled on 2010-06-09
GenBank Submission: KX795878
> BO25260.complete
GAAGTTATCAGTCGACATGAGTTTTATTTTTAAATTTATTGCCACTTTTG
TACGCAAAATGCTGGAGCTGTTGCAATTTGGAGGGAAAACCCTTACGCAC
ACGCTGAGTATTTATGTAAAAACGAACACGGGCAAAACGCTGACCGTTAA
TCTGGAGCCCCAGTGGGATATTAAAAACGTAAAGGAACTGGTGGCACCAC
AATTGGGACTTCAGCCGGATGATCTAAAGATCATATTTGCCGGTAAGGAA
CTAAGCGATGCCACGACAATAGAGCAATGTGACTTGGGTCAGCAAAGCGT
TTTGCATGCCATTCGTTTGCGACCGCCCGTGCAGCGCCAGAAAATCCAGT
CGGCCACTTTGGAGGAGGAGGAACCTTCGCTTAGCGATGAAGCCTCCAAG
CCTCTAAATGAAACTCTGTTGGACTTGCAGCTGGAAAGCGAGGAGCGTCT
GAATATAACCGATGAAGAAAGAGTCCGTGCCAAAGCGCATTTCTTTGTAC
ATTGCAGCCAATGCGATAAGCTGTGTAATGGCAAACTTCGGGTCCGCTGC
GCTTTATGCAAGGGCGGCGCCTTTACTGTCCATCGTGATCCGGAGTGTTG
GGATGATGTCTTGAAGTCGCGTAGAATTCCCGGTCATTGTGAAAGTCTGG
AGGTGGCCTGCGTGGACAACGCGGCTGGCGATCCGCCCTTCGCTGAATTC
TTCTTCAAGTGTGCTGAGCATGTCTCCGGCGGGGAGAAGGATTTTGCGGC
TCCATTGAATCTAATCAAGAATAACATCAAGAATGTTCCTTGCCTGGCCT
GCACGGATGTGAGTGATACCGTGTTGGTTTTCCCCTGCGCATCGCAGCAC
GTCACCTGTATCGACTGCTTCCGCCATTATTGCCGTTCCCGTTTGGGCGA
GCGTCAGTTTATGCCGCATCCGGACTTCGGCTACACCTTGCCCTGTCCCG
CAGGCTGCGAGCACTCGTTCATCGAGGAGATTCATCACTTCAAGCTGTTG
ACACGCGAGGAGTACGATCGGTACCAGAGATTCGCCACCGAGGAGTATGT
CCTACAGGCAGGTGGAGTACTCTGCCCCCAGCCAGGATGCGGCATGGGCC
TTTTGGTGGAGCCCGATTGTCGCAAGGTGACATGCCAGAACGGCTGTGGA
TACGTGTTCTGCCGCAATTGTCTGCAGGGCTACCATATCGGGGAGTGTCT
GCCCGAGGGGACGGGCGCCAGTGCCACAAACTCCTGCGAGTACACCGTGG
ACCCAAATCGAGCTGCCGAGGCGCGATGGGATGAGGCCAGCAATGTCACC
ATCAAAGTCAGCACCAAGCCCTGTCCAAAATGCAGAACCCCAACGGAGCG
AGATGGCGGTTGCATGCACATGGTCTGCACACGCGCTGGCTGCGGATTCG
AGTGGTGCTGGGTCTGCCAGACTGAGTGGACACGCGACTGCATGGGAGCC
CACTGGTTCGGCGCAAGCTTTCTAGACCAT
BO25260.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:50:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| park-RC | 1449 | CG10523-PC | 1..1446 | 17..1462 | 7200 | 99.9 | Plus |
| park-RB | 1449 | CG10523-PB | 1..1446 | 17..1462 | 7200 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| park-RC | 1609 | CG10523-RC | 68..1513 | 17..1462 | 7200 | 99.9 | Plus |
| park-RB | 1630 | CG10523-RB | 89..1534 | 17..1462 | 7200 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21195186..21195632 | 1258..812 | 2235 | 100 | Minus |
| 3L | 28110227 | 3L | 21195772..21196119 | 813..466 | 1740 | 100 | Minus |
| 3L | 28110227 | 3L | 21196445..21196702 | 274..17 | 1290 | 100 | Minus |
| 3L | 28110227 | 3L | 21196193..21196387 | 467..273 | 975 | 100 | Minus |
| 3L | 28110227 | 3L | 21194850..21194957 | 1462..1355 | 540 | 100 | Minus |
| 3L | 28110227 | 3L | 21195033..21195130 | 1356..1259 | 460 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:50:36 has no hits.
BO25260.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-09 11:57:09 Download gff for
BO25260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| park-RC | 78..1508 | 32..1464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:28:39 Download gff for
BO25260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| park-RB | 104..1534 | 32..1464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:37:11 Download gff for
BO25260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| park-RB | 104..1534 | 32..1464 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:37:11 Download gff for
BO25260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21194848..21194956 | 1356..1464 | 98 | <- | Minus |
| 3L | 21195034..21195130 | 1259..1355 | 97 | <- | Minus |
| 3L | 21195186..21195630 | 814..1258 | 100 | <- | Minus |
| 3L | 21195772..21196117 | 468..813 | 100 | <- | Minus |
| 3L | 21196193..21196385 | 275..467 | 100 | <- | Minus |
| 3L | 21196445..21196687 | 32..274 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:28:39 Download gff for
BO25260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21188134..21188230 | 1259..1355 | 97 | <- | Minus |
| arm_3L | 21187948..21188056 | 1356..1464 | 98 | <- | Minus |
| arm_3L | 21188286..21188730 | 814..1258 | 100 | <- | Minus |
| arm_3L | 21188872..21189217 | 468..813 | 100 | <- | Minus |
| arm_3L | 21189293..21189485 | 275..467 | 100 | <- | Minus |
| arm_3L | 21189545..21189787 | 32..274 | 100 | | Minus |
BO25260.pep Sequence
Translation from 16 to 1480
> BO25260.pep
MSFIFKFIATFVRKMLELLQFGGKTLTHTLSIYVKTNTGKTLTVNLEPQW
DIKNVKELVAPQLGLQPDDLKIIFAGKELSDATTIEQCDLGQQSVLHAIR
LRPPVQRQKIQSATLEEEEPSLSDEASKPLNETLLDLQLESEERLNITDE
ERVRAKAHFFVHCSQCDKLCNGKLRVRCALCKGGAFTVHRDPECWDDVLK
SRRIPGHCESLEVACVDNAAGDPPFAEFFFKCAEHVSGGEKDFAAPLNLI
KNNIKNVPCLACTDVSDTVLVFPCASQHVTCIDCFRHYCRSRLGERQFMP
HPDFGYTLPCPAGCEHSFIEEIHHFKLLTREEYDRYQRFATEEYVLQAGG
VLCPQPGCGMGLLVEPDCRKVTCQNGCGYVFCRNCLQGYHIGECLPEGTG
ASATNSCEYTVDPNRAAEARWDEASNVTIKVSTKPCPKCRTPTERDGGCM
HMVCTRAGCGFEWCWVCQTEWTRDCMGAHWFGASFLDH
BO25260.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:59:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| park-PC | 482 | CG10523-PC | 1..482 | 1..482 | 2666 | 100 | Plus |
| park-PB | 482 | CG10523-PB | 1..482 | 1..482 | 2666 | 100 | Plus |
| CG12362-PA | 511 | CG12362-PA | 140..345 | 259..487 | 218 | 27 | Plus |
| CG12362-PB | 511 | CG12362-PB | 140..345 | 259..487 | 218 | 27 | Plus |
| ari-1-PF | 503 | CG5659-PF | 105..340 | 229..487 | 207 | 26.2 | Plus |
