BO25269.complete Sequence
1783 bp assembled on 2010-07-15
GenBank Submission: KX795665
> BO25269.complete
GAAGTTATCAGTCGACATGGTCAGAAAGCAAGTTGGAATCGAAAACAGTG
CATCCTTAGCAGTAAGCAAGCAGCAGGATCAAAAGGAGCAGGACTATAAG
CCAGAGGATCAAAAGCAACAGCACATCGACATCGACTTGACGCCCGATCC
GGCCAGCAACTTCAACTTCGCCCAGCAGGCGCAGGCCAACTACTCCGCCC
GCACGCTAGCCGCCAGCTATGAGCACGGCCAAAATCTCGGCCTGCAACAT
GCCCATCTTGCCACCAGCAGCACTACCAACACGCCCTTGGCCTATGATCT
GCACGAGGTCGCCAGCTCCGGCTCCATCCTGCCCACCGAGATCCCCATCG
AGGACGAGGAGCGGCTGGAGCGCATCTTCAACAAGCTGGACCGCGATGGC
GACGGCAGGATCGATATCCACGACCTGTCAGCGGCACTGCACGAGTTCGG
GTTGTCGAGCGTTTACGCGGAGAAATTCCTTCAGCAGTCGGACAAGGATC
AGAGCGGCAACGTGGGCTTCGCCGAGTTCCTGCACTACGTGCGGGAGCAT
GAGAAGAACCTGGTCCTGCAGTTCTCGCACCTAGATAAAAATCGCGATGG
CAAAGTGGACTTGGAGGAGCTGATATCGGCGTTCAAGGACCTGGGCCTGG
ACATTGACATGGACGAGGCCAGAAATCTGCTCACCAGAATGGACAAGGAT
GGCAGCCTGAACATTAGCTTTAACGAGTGGCGGGACTTCATGCTCTTGGC
GCCCTCAACGGACATTCATGACTTGATTAAATTTTGGCGGCACTCTACTT
ACCTCGACATTGGCGAGGATATGAACGTACCTGATGACTTCACACAGAAA
GAGATGCAGACGGGCCTCTGGTGGCGACACTTGGTGGCCGGTGGCATAGC
TGGAGCAGTTTCTCGGACGTGCACAGCGCCTCTGGACAGGATTAAAGTGT
ACTTGCAGGTACAAACACAAAGAATGGGAATCTCAGAGTGTATGCACATC
ATGCTGAACGAGGGCGGATCGCGGAGCATGTGGCGAGGCAATGGCATCAA
TGTGTTGAAGATTGCCCCCGAAACGGCTTTCAAGTTCGCTGCCTACGAAC
AGATGAAGCGACTGATTCGCGGTGACGATGGCAGCCGCCAGATGAGCATC
GTGGAGCGATTCTATGCGGGCGCAGCGGCAGGCGGAATTTCACAGACCAT
CATCTACCCCATGGAAGTATTAAAGACGCGCCTGGCGCTCCGGAGAACGG
GACAGTATGCGGGTATTGCCGATGCGGCGGTCAAGATCTACAAGCAGGAA
GGAGTGCGCAGCTTCTATCGTGGCTATGTACCGAACATCCTGGGTATTCT
GCCCTATGCCGGCATCGATTTGGCGGTATATGAAACCCTCAAGAGGCGGT
ACATTGCCAATCACGACAACAACGAGCAGCCCAGCTTTCTAGTGCTCCTC
GCATGCGGCAGTACATCGAGCACACTCGGGCAGCTCTGCTCGTACCCGCT
GGCCCTGGTGCGCACTCGGCTACAGGCACAAGCCGCCGAAACAATTGCCA
ATCAAAAGCGGAAAACGCAAATACCCCTGAAGAGCAGCGACGCGCACAGC
GGCGAGGAAACGATGACGGGCCTGTTCCGCAAGATCGTGCGACAGGAGGG
ACTGACGGGGCTGTACCGCGGCATAACGCCAAACTTCCTCAAGGTCCTGC
CGGCGGTGTCCATCAGCTACGTGGTGTACGAGTATACGAGTCGCGCCCTG
GGCATTAAGATGTCGGCAAGCTTTCTAGACCAT
BO25269.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:43:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32103-RE | 1752 | CG32103-PE | 1..1749 | 17..1765 | 8745 | 100 | Plus |
| CG32103-RB | 1752 | CG32103-PB | 1..1749 | 17..1765 | 8745 | 100 | Plus |
| CG32103-RD | 1053 | CG32103-PD | 85..1050 | 800..1765 | 4830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:43:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32103-RE | 3836 | CG32103-RE | 325..2073 | 17..1765 | 8745 | 100 | Plus |
| CG32103-RB | 2622 | CG32103-RB | 321..2069 | 17..1765 | 8745 | 100 | Plus |
| CG32103-RD | 1603 | CG32103-RD | 85..1050 | 800..1765 | 4830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:43:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12404363..12404939 | 1532..956 | 2885 | 100 | Minus |
| 3L | 28110227 | 3L | 12413448..12413903 | 472..17 | 2280 | 100 | Minus |
| 3L | 28110227 | 3L | 12404058..12404292 | 1765..1531 | 1175 | 100 | Minus |
| 3L | 28110227 | 3L | 12405000..12405160 | 960..800 | 805 | 100 | Minus |
| 3L | 28110227 | 3L | 12412329..12412458 | 600..471 | 650 | 100 | Minus |
| 3L | 28110227 | 3L | 12412011..12412125 | 799..685 | 575 | 100 | Minus |
| 3L | 28110227 | 3L | 12412185..12412273 | 687..599 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:43:08 has no hits.
BO25269.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:48:19 Download gff for
BO25269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32103-RA | 389..2137 | 17..1767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:43 Download gff for
BO25269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32103-RB | 321..2069 | 17..1767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:35:26 Download gff for
BO25269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32103-RB | 321..2069 | 17..1767 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:35:26 Download gff for
BO25269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12412011..12412122 | 688..799 | 100 | <- | Minus |
| 3L | 12412185..12412272 | 600..687 | 100 | <- | Minus |
| 3L | 12412330..12412456 | 473..599 | 100 | <- | Minus |
| 3L | 12404055..12404290 | 1533..1767 | 99 | <- | Minus |
| 3L | 12404363..12404936 | 959..1532 | 100 | <- | Minus |
| 3L | 12405002..12405160 | 800..958 | 100 | <- | Minus |
| 3L | 12413448..12413903 | 17..472 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:43 Download gff for
BO25269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12397155..12397390 | 1533..1767 | 99 | <- | Minus |
| arm_3L | 12397463..12398036 | 959..1532 | 100 | <- | Minus |
| arm_3L | 12398102..12398260 | 800..958 | 100 | <- | Minus |
| arm_3L | 12405111..12405222 | 688..799 | 100 | <- | Minus |
| arm_3L | 12405285..12405372 | 600..687 | 100 | <- | Minus |
| arm_3L | 12405430..12405556 | 473..599 | 100 | <- | Minus |
| arm_3L | 12406548..12407003 | 17..472 | 100 | | Minus |
BO25269.pep Sequence
Translation from 16 to 1783
> BO25269.pep
MVRKQVGIENSASLAVSKQQDQKEQDYKPEDQKQQHIDIDLTPDPASNFN
FAQQAQANYSARTLAASYEHGQNLGLQHAHLATSSTTNTPLAYDLHEVAS
SGSILPTEIPIEDEERLERIFNKLDRDGDGRIDIHDLSAALHEFGLSSVY
AEKFLQQSDKDQSGNVGFAEFLHYVREHEKNLVLQFSHLDKNRDGKVDLE
ELISAFKDLGLDIDMDEARNLLTRMDKDGSLNISFNEWRDFMLLAPSTDI
HDLIKFWRHSTYLDIGEDMNVPDDFTQKEMQTGLWWRHLVAGGIAGAVSR
TCTAPLDRIKVYLQVQTQRMGISECMHIMLNEGGSRSMWRGNGINVLKIA
PETAFKFAAYEQMKRLIRGDDGSRQMSIVERFYAGAAAGGISQTIIYPME
VLKTRLALRRTGQYAGIADAAVKIYKQEGVRSFYRGYVPNILGILPYAGI
DLAVYETLKRRYIANHDNNEQPSFLVLLACGSTSSTLGQLCSYPLALVRT
RLQAQAAETIANQKRKTQIPLKSSDAHSGEETMTGLFRKIVRQEGLTGLY
RGITPNFLKVLPAVSISYVVYEYTSRALGIKMSASFLDH
BO25269.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:25:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32103-PE | 583 | CG32103-PE | 1..583 | 1..583 | 2997 | 100 | Plus |
| CG32103-PB | 583 | CG32103-PB | 1..583 | 1..583 | 2997 | 100 | Plus |
| CG32103-PD | 350 | CG32103-PD | 29..350 | 262..583 | 1648 | 100 | Plus |
| CG32103-PC | 363 | CG32103-PC | 42..363 | 262..583 | 1648 | 100 | Plus |
| att-ORFA-PE | 290 | CG4241-PE | 1..273 | 289..572 | 422 | 35.8 | Plus |
