BO25306.complete Sequence
2266 bp assembled on 2010-07-15
GenBank Submission: KX798138
> BO25306.complete
GAAGTTATCAGTCGACATGACGGGCGCCAAGAAAAGATCGGGAGCACCGT
TAGTGGATGCAGCTCACTCGAAAGCCCCAAAACCAGGTACAGTTGCCCAA
GAAAAAAACAGCCAAATTCCAACTGTTTGGAAAAAGGATCATGTAAAAAC
TCAACTTTTCGAAAGATCAAACGAAAAGCCATCCAAAAAAAGAACTCCGC
TAGTGGCTCCTAGAGTTCAGCAATCAAAAATTGAAGCGCAAACTTCTCAG
GCTGTGGAAAAAACACAGGAAGACCAAACTTTTGCAGCCACCATAGACAG
TTCAACAAAAAGTCTAAAAAAGTCTCCCAAAAACGAGGGAGAATTATGGG
CAGATATTCAGAAGCTGTCGCCCCACACGGGAATAATAATTCATAGCTTC
ATAAAGCAGTACAACGAATCGCTAAATAATCTCAAGAAGAAAGACTTGGT
GGTCAGCAAGAAAATGAGAGCCATCGCCATGGACTCGCTGAAGAAAAAAT
CGGAAAATATCAGCTTGAAGGAAAAGTTGACAAATATGGAACTGGAGCTG
ACCCAACTGAAAACTGATCTTATCGAGCAGCAGGAGAAGAACGCAGAGAA
CATCCAGAAGTACACGGAAATCAACAAAAAGTACACCCACTGCGAGCAAC
ATTACGACAAGGAGCTGGAAATCATTAAAGTATGTGTTGAGAAGAAAAAT
TCAGAGCTCCGAGATGCTCAATCCCGGATGGCCCTGCAGGCGCAAGAGCT
GAATAATATGCAGCAAACGAATCGTGAGTTAGCTGGAGCCTGCGAGAATT
ATAAAAAGGATTTGGAAGAAGCAGAAGTGGCCAAATCTATGATTCTACAT
GAACTTACCGATCTCAAAGAGCTCCACGAAGACCTACAGCTTCAATTTGA
AGATGTGTCTGCACAAAAGGAAAAGTTTGAGGCAAACATTTTACAATTAA
GCAGCGACTTAAATGCAAAGATGCTTGACTGCGCCCAGCTTGAAGATCGC
ATTGAGCAGCTGCCAATAGAGGCCAACAAAGCTTTGTCGAAACTGCAACG
TGATTTAGAAGCCAGTGAATTGCAGTTCGTGGATCAGCAACGATTGACTG
ATCAGGCAACGAGGGAACTCGAACTTGTTCGCAATGAGATAAATACGTTT
AAGACTCTTATTGAGGAAAAGGAAAGAAGACATGTTTCCCTAAGTGATGA
ACTAACTCAAATGACGGAGAGATTGAGCGAGCTCGCTGATATCAACGAAA
GTTATATCAATGAGTTGACTGAAACAAAATTGAAGCACTCCCAGGAAATA
AAAGATCAAGCAGATGCCTACGAGATTGTTGTTCAAGAGTTAAAAGAGAG
CTTGAACAAGGCTTCAGTTGATTTTACTCAGCTAAAAAGCAACAGTGAGA
AGCTACACAAAGAAACCCTTCTGCAGGTCTCCGAACTGCAGGAAAAACTT
ATAGAAATGGTGTCCCATCGCAGCAATCAGGAAGAGCTAATAAAGCGTCT
TGGTAATGAAATTCAAGAAAAAACTCATAATTTTGAAGAAGAACTCAAAA
GGCAACAGGAGCAGCTTGCTAATCAAATGCAGATGAAGGCCACTGAAGTT
GAGAGCGAAAATAAGCGAAACGCTGTTGAAATACAAAAACTTAAATCTGA
ACTCGAAGAAAGGAATAAAGCTTTTAAGGCTCAACAGGATAAATTGGAAT
ATTTGATTAGTGATCATGATACGCTAAAGAGCGCTATTATCAATCTTCAG
GCTGAAAAGAAGGAAATCGAGAGTGAATTATCCACGGCCAAAGTTAAATT
TAGCGAGGAATTACAGTCTCAGAAAGATAACCTAATGAAAAAGGTATCCG
AATTGGAGCTTGAAATTAAAAGAAAAGAAACCGAATTGATTGAACTTGAG
CGTGAAAAGAACAATGAAATGGCTGTGCTACAATTTAAAATGAATCGAAT
TAACTGCCTGATCGACCAACCAGTGACCACAATTAAACAGCTAAAAGATT
CCAAAGGGCCAACCAGAACTGAGAGCATTCCTACTAAGGTGCAACCGGAA
AATACAGACGAATTTTCAAGCACTGCCAGAAAGCGTAATGCTCGTCGTCA
AAAAATTACCACATATTCCTCCGACTTTGATAGCGGCGATGATATACCAA
TCGTGGGCAACTCTTTAAGCGGCAAACGTGCCAAATTATGTGCGCCCATC
AAGCCACAAAATAATATTGATATGTTCGACATGTTGAAGAATTCTAAAGC
AAGCTTTCTAGACCAT
BO25306.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:44:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| c(3)G-RC | 2235 | CG17604-PC | 1..2232 | 17..2248 | 11160 | 100 | Plus |
| c(3)G-RB | 2235 | CG17604-PB | 1..2232 | 17..2248 | 11160 | 100 | Plus |
| c(3)G-RA | 2235 | CG17604-PA | 1..2232 | 17..2248 | 11160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:44:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| c(3)G-RC | 2629 | CG17604-RC | 80..2311 | 17..2248 | 11160 | 100 | Plus |
| c(3)G-RB | 2594 | CG17604-RB | 68..2299 | 17..2248 | 11160 | 100 | Plus |
| c(3)G-RA | 2617 | CG17604-RA | 68..2299 | 17..2248 | 11160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:44:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15790380..15790894 | 1837..1323 | 2575 | 100 | Minus |
| 3R | 32079331 | 3R | 15791932..15792442 | 527..17 | 2555 | 100 | Minus |
| 3R | 32079331 | 3R | 15790952..15791350 | 1328..930 | 1980 | 99.7 | Minus |
| 3R | 32079331 | 3R | 15789948..15790184 | 2149..1913 | 1185 | 100 | Minus |
| 3R | 32079331 | 3R | 15791652..15791878 | 752..526 | 1120 | 99.6 | Minus |
| 3R | 32079331 | 3R | 15791401..15791586 | 932..747 | 930 | 100 | Minus |
| 3R | 32079331 | 3R | 15789791..15789889 | 2248..2150 | 495 | 100 | Minus |
| 3R | 32079331 | 3R | 15790240..15790315 | 1912..1837 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:44:55 has no hits.
BO25306.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:48:23 Download gff for
BO25306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c(3)G-RC | 73..2304 | 17..2250 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:03 Download gff for
BO25306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c(3)G-RA | 68..2299 | 17..2250 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:36:05 Download gff for
BO25306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c(3)G-RA | 68..2299 | 17..2250 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:36:05 Download gff for
BO25306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15789789..15789889 | 2150..2250 | 98 | <- | Minus |
| 3R | 15789948..15790184 | 1913..2149 | 100 | <- | Minus |
| 3R | 15790240..15790314 | 1838..1912 | 100 | <- | Minus |
| 3R | 15790380..15790892 | 1325..1837 | 100 | <- | Minus |
| 3R | 15790956..15791348 | 932..1324 | 100 | <- | Minus |
| 3R | 15791402..15791584 | 749..931 | 100 | <- | Minus |
| 3R | 15791656..15791878 | 526..748 | 100 | <- | Minus |
| 3R | 15791934..15792442 | 17..525 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:03 Download gff for
BO25306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11615511..11615611 | 2150..2250 | 98 | <- | Minus |
| arm_3R | 11615670..11615906 | 1913..2149 | 100 | <- | Minus |
| arm_3R | 11615962..11616036 | 1838..1912 | 100 | <- | Minus |
| arm_3R | 11616102..11616614 | 1325..1837 | 100 | <- | Minus |
| arm_3R | 11616678..11617070 | 932..1324 | 100 | <- | Minus |
| arm_3R | 11617124..11617306 | 749..931 | 100 | <- | Minus |
| arm_3R | 11617378..11617600 | 526..748 | 100 | <- | Minus |
| arm_3R | 11617656..11618164 | 17..525 | 100 | | Minus |
BO25306.pep Sequence
Translation from 16 to 2266
> BO25306.pep
MTGAKKRSGAPLVDAAHSKAPKPGTVAQEKNSQIPTVWKKDHVKTQLFER
SNEKPSKKRTPLVAPRVQQSKIEAQTSQAVEKTQEDQTFAATIDSSTKSL
KKSPKNEGELWADIQKLSPHTGIIIHSFIKQYNESLNNLKKKDLVVSKKM
RAIAMDSLKKKSENISLKEKLTNMELELTQLKTDLIEQQEKNAENIQKYT
EINKKYTHCEQHYDKELEIIKVCVEKKNSELRDAQSRMALQAQELNNMQQ
TNRELAGACENYKKDLEEAEVAKSMILHELTDLKELHEDLQLQFEDVSAQ
KEKFEANILQLSSDLNAKMLDCAQLEDRIEQLPIEANKALSKLQRDLEAS
ELQFVDQQRLTDQATRELELVRNEINTFKTLIEEKERRHVSLSDELTQMT
ERLSELADINESYINELTETKLKHSQEIKDQADAYEIVVQELKESLNKAS
VDFTQLKSNSEKLHKETLLQVSELQEKLIEMVSHRSNQEELIKRLGNEIQ
EKTHNFEEELKRQQEQLANQMQMKATEVESENKRNAVEIQKLKSELEERN
KAFKAQQDKLEYLISDHDTLKSAIINLQAEKKEIESELSTAKVKFSEELQ
SQKDNLMKKVSELELEIKRKETELIELEREKNNEMAVLQFKMNRINCLID
QPVTTIKQLKDSKGPTRTESIPTKVQPENTDEFSSTARKRNARRQKITTY
SSDFDSGDDIPIVGNSLSGKRAKLCAPIKPQNNIDMFDMLKNSKASFLDH
BO25306.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:25:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| c(3)G-PC | 744 | CG17604-PC | 1..744 | 1..744 | 3702 | 100 | Plus |
| c(3)G-PB | 744 | CG17604-PB | 1..744 | 1..744 | 3702 | 100 | Plus |
| c(3)G-PA | 744 | CG17604-PA | 1..744 | 1..744 | 3702 | 100 | Plus |
| mud-PK | 1912 | CG12047-PK | 956..1495 | 90..628 | 305 | 23.5 | Plus |
| mud-PL | 2501 | CG12047-PL | 956..1494 | 90..627 | 301 | 22.9 | Plus |
| mud-PK | 1912 | CG12047-PK | 954..1411 | 163..628 | 272 | 23.5 | Plus |
| mud-PK | 1912 | CG12047-PK | 1103..1661 | 130..671 | 235 | 20 | Plus |
| mud-PK | 1912 | CG12047-PK | 1296..1771 | 156..648 | 217 | 21.5 | Plus |
