BO25318.complete Sequence
1342 bp assembled on 2010-06-10
GenBank Submission: KX794339
> BO25318.complete
GAAGTTATCAGTCGACATGGCCTGCTTGAGCACTTCCGGTCGCGTCGTGT
GCGGCTCGCGTCGCCAGCAGGCGCACAAGCTGCTCTATCAGCTCTTCGGA
TCCCGGCCAGGATATACAGCCCCGTCCGCCGCAACCGGATTATTCAGTCC
GCCCAAAGTTCAACAGCAGGCCATGCGACTCTACCACGGATTAAGCTTCA
GCATGGGCAAGGATTACCCCGATCTGCTGCAAAGTCCCCACAAGTGCAGC
CAATCGCTGCAGTACTCGCAAAGTTCCAAGGCGAATCTGAGGCAGCACAG
CTCGGTCCACACACAACAGCCAGCAGGTCCTGTGAGGGAGTTCCAGATCG
ATCCCTACATCATACTCGATGACGACCTCAAGTACTTCTACGACGATGTG
CGATATCTGCTGAAATCGGGCACATCCCAGCCAGAGTTGGACACCATTGC
CAGCTATTACTTCGATGGCCAGGGCAAGGCTCTGCGACCCATGGTTACCA
TGCTGATGGCCAAGGCGATAAACTATCACCTGAACAACGAGTCACACCAA
TTAGTACACAAACAGCGACAGATCGCCCTCTTTTCGGAGATGGTGCACTC
GGCCAGTCTGGTCCACGACGATGTCATCGATCAGTCGGACTTCCGACGCG
GCAAGCCCAGCGTGAATGCTCTGTGGAACCACAAGAAGGTCACAATGGCT
GGTGATTACATCTTATCGATTGCCTCGATTATGATAGCTCGTCTGCGCAG
CGATGATGTGACGATCGTGCTGAGTCAGATCTTGACCGATTTGGTCCAAG
GCGAGTTCATGCAGCTGGGCTCAAGGGAAACGGAGAACGAGCGCTTCGCC
CATTATCTGACCAAGACATACAGGAAGACCGCATCGCTGATCGCCAATGC
ACTGAAGGCGACCGCCGTGATTGCCCAGGCCGACGACAACGTGGCCGAGG
TGGCCTTCCAGTACGGACGCAACATCGGCTTGGCCTTTCAGCTGGTCGAC
GACATGCTGGACTTTGTCTCCTCCACCGAGCAGATGGGCAAGCCGACGGC
GGCGGATTTGAAGCTGGGTCTGGCCACCGCTCCCGTCCTCTTTGCATGCG
AGAAGTACCCCGAGCTGAATCCCATGGTGATGCGGCGCTTCAGCGAGCCC
GGCGACGTGGAGCGCGCCTTCGAGCTGGTGCACAAGTCGCACGGTCTGGA
GCAGACCCGGTTTCTGGCCAAGAAGCACTGCAACGAGGCGATACGGCTGG
CCCAGGAGCTCACGGAGTCGCCCTACCAGAAGGGTCTCCAGGTGGTCGCC
GACTTAGTCATCAACCGCATGAAGGCAAGCTTTCTAGACCAT
BO25318.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:03:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qless-RB | 1311 | CG31005-PB | 1..1308 | 17..1324 | 6540 | 100 | Plus |
| qless-RA | 1311 | CG31005-PA | 1..1308 | 17..1324 | 6540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qless-RB | 2784 | CG31005-RB | 281..1588 | 17..1324 | 6540 | 100 | Plus |
| qless-RA | 3218 | CG31005-RA | 715..2022 | 17..1324 | 6540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31237231..31237451 | 1324..1104 | 1105 | 100 | Minus |
| 3R | 32079331 | 3R | 31251682..31251894 | 229..17 | 1065 | 100 | Minus |
| 3R | 32079331 | 3R | 31237968..31238163 | 1105..910 | 980 | 100 | Minus |
| 3R | 32079331 | 3R | 31242598..31242779 | 406..225 | 895 | 99.5 | Minus |
| 3R | 32079331 | 3R | 31241633..31241776 | 690..547 | 720 | 100 | Minus |
| 3R | 32079331 | 3R | 31242171..31242310 | 546..407 | 700 | 100 | Minus |
| 3R | 32079331 | 3R | 31238353..31238487 | 910..776 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 31240992..31241083 | 778..687 | 460 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 03:03:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Helitron | 564 | Helitron HELITRON1_DM 564bp | 186..233 | 680..727 | 114 | 70.8 | Plus |
BO25318.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-10 21:24:55 Download gff for
BO25318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31005-RA | 711..2018 | 17..1326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:00 Download gff for
BO25318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qless-RA | 715..2022 | 17..1326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:38 Download gff for
BO25318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qless-RA | 715..2022 | 17..1326 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:38 Download gff for
BO25318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31251682..31251894 | 17..229 | 100 | | Minus |
| 3R | 31237968..31238162 | 911..1105 | 100 | <- | Minus |
| 3R | 31238353..31238484 | 779..910 | 100 | <- | Minus |
| 3R | 31240992..31241081 | 689..778 | 100 | <- | Minus |
| 3R | 31241635..31241776 | 547..688 | 100 | <- | Minus |
| 3R | 31242171..31242310 | 407..546 | 100 | <- | Minus |
| 3R | 31242598..31242774 | 230..406 | 100 | <- | Minus |
| 3R | 31237229..31237449 | 1106..1326 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:00 Download gff for
BO25318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27067893..27068032 | 407..546 | 100 | <- | Minus |
| arm_3R | 27062951..27063171 | 1106..1326 | 99 | <- | Minus |
| arm_3R | 27063690..27063884 | 911..1105 | 100 | <- | Minus |
| arm_3R | 27064075..27064206 | 779..910 | 100 | <- | Minus |
| arm_3R | 27066714..27066803 | 689..778 | 100 | <- | Minus |
| arm_3R | 27067357..27067498 | 547..688 | 100 | <- | Minus |
| arm_3R | 27068320..27068496 | 230..406 | 100 | <- | Minus |
| arm_3R | 27077404..27077616 | 17..229 | 100 | | Minus |
BO25318.pep Sequence
Translation from 16 to 1342
> BO25318.pep
MACLSTSGRVVCGSRRQQAHKLLYQLFGSRPGYTAPSAATGLFSPPKVQQ
QAMRLYHGLSFSMGKDYPDLLQSPHKCSQSLQYSQSSKANLRQHSSVHTQ
QPAGPVREFQIDPYIILDDDLKYFYDDVRYLLKSGTSQPELDTIASYYFD
GQGKALRPMVTMLMAKAINYHLNNESHQLVHKQRQIALFSEMVHSASLVH
DDVIDQSDFRRGKPSVNALWNHKKVTMAGDYILSIASIMIARLRSDDVTI
VLSQILTDLVQGEFMQLGSRETENERFAHYLTKTYRKTASLIANALKATA
VIAQADDNVAEVAFQYGRNIGLAFQLVDDMLDFVSSTEQMGKPTAADLKL
GLATAPVLFACEKYPELNPMVMRRFSEPGDVERAFELVHKSHGLEQTRFL
AKKHCNEAIRLAQELTESPYQKGLQVVADLVINRMKASFLDH
BO25318.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:59:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qless-PB | 436 | CG31005-PB | 1..436 | 1..436 | 2233 | 100 | Plus |
| qless-PA | 436 | CG31005-PA | 1..436 | 1..436 | 2233 | 100 | Plus |
| qm-PB | 338 | CG8593-PB | 57..299 | 182..424 | 158 | 24.7 | Plus |
| qm-PA | 338 | CG8593-PA | 57..299 | 182..424 | 158 | 24.7 | Plus |
