BO25336.complete Sequence
2560 bp assembled on 2010-07-15
GenBank Submission: KX797700
> BO25336.complete
GAAGTTATCAGTCGACATGATTAGTGAACGCCACAAGAGCCGCGATTTGG
TTACGATACTTGGCCTGTTCCACCTCCTGCTCCTCGGATTCGCCTACGGC
GACCATGTGGTCGAGGTCTTGGCTCAATCAACAACCGCATCCACATCACA
GCCGCAGACTTTGGAGACGATTGGCAGCCAGGATGGGGCTGCTCTGACGC
CCGGTGCGACAACAGCTCCACGACTGGACCCGAACAACAACAACGAGTGG
CGTCCTCTTGGCCACGGGGATCCACTGCAAAAGGATCCCACCTACGACTA
CAGTCCGCCGGCCTTGGATCGAGTACGCTACTGGGCGGAGAACAACAGCA
CTGGTCAAAGTAATCCAGAGGCCAGGAAAAAGGAACTACCACCAGAGGTT
CTTCGCAATAAAACGAAAAGTGAGGTACTGCTCCTTGGAGTGGCAAGTGA
TCGCGTTAGGGTACCCCACTCCCATTCGTATCCACCAGTTGGTGGCTTAG
GCCATTATCAGCAGCACCACCAGCAGCAGCAACAGCAGCAGCACCAGCAA
CAAGCTAAATATGCGGCCATCCGGAGGAGCTACTATGCTCCCACCCAGCA
ACAACATAACCCACAAATGCCACAGCATACACATGCCCAGCAGCACATGC
CGCCTACCCATTTGATGCCACCACCCATGATGATGATGAAATCAAGTGGT
TCGTCCGTTCCTCCCATGGAATACAGGCACAGTATGATGGCCACGGGAGC
GCCCACCTCTTACATGAGCCTCAACCATATGAGCTCTCCAACTACCAAAC
AAGCGATGACTTCCTCAGTGATTTACCATCAGCCACCAGCGATGAGCCAC
CACACCTCATTATCTTCTTCAACGCCTTGGATGACCAGTAGGCCACCATA
TCGTTTATCGTACTCAGATCCCCATCTGCAGGAATCCGTGCATACATACA
GCTTTTCAAGGCCCCATCACCAGCAAACGATGATCTACTCGCCCAACTCT
CTCCCAGGACATCAAAATGGATCAAAGACGGGTCTTAGGAAGCCGTGGCT
CCATGAGCTACTCCAAAAAGAGGTGGTGGTAACGTCGAAGCCCAAGGTTA
AGCCCACAATGCCAGCCACAAAATATTTGATGGGAACAACCAAGCCACAT
CAGCCACAACCATCTGTTGGCTTTGGCATGAGCTCCACCCGCCCTCCATT
TACCTATGCACCCGTGACATTTGTGCCTGGTCCACCTACCATAGCCGTTC
CGACTGTGGCCACTAGAAAAGAACCACAACCGGAAATCTATATCACACCC
ACGCCCCAAACAAGTAGCTCTGGTTTTAGACCCATGACGATGAGCAGCAC
TACCACCGTGGGAACCACTCAATCGACCATAACTACTCCTTTGTCCATTT
ATCAGCGAGCCAGCACAACCACCAGTAATCGTTTACTGATCCCCCAGACG
AGCAATCTAGCGCAGAGACCCACAGTGGCTCCTGCTCCCAGTGAACCCAC
CACAGACTCTCTTTTCTCGCACTACAAGCAACCACCGAAACCGCTACTAG
GACCCATGTACCTCATCATCGAGGGTCATTCGAAAGTGAAGACCTACGGT
CAAAATGAATTGGATCCACATAGTCCGAAGATAGTGCCGGTTATCTCCAA
GAGGGAACCAGTAGTTAGGATAGCCGATCCTAATGAGAAGAGGGGAACTG
TGGAGTCCTATCAGGTAAAACATTTGCACACCAAAACAACACCAATGACA
ACGACAACCACGACTAATAAGCCCACTACCATGAAACCTACGACGACAAG
GGCGCCTGAAAAAACTCCTATATATAGCACCACCACTAAGGCTCCAGTAG
TAAGCACTAGCACTACAACCGTTGCCACCGCTACGAAAACCACAACTTCA
ACAACCACTAAAGTGCCCATAATCAGCACCACCCCTTTAATTCCACCACA
ACCCACTCCAGAAAAGCCAAGCGGTGTAAACGATCTGCTTAGTCTACTGG
ACAATATGTTTGCCGATGCCCAAAAGATGGGCTCATCCACTGATTTACCT
TTGGTAGCAAGTTCTACTACCAGCACTGTGCTGAGGCCAGTTAGCACCAA
GTTGTTGCCGCAGCAACCGGAACCTAGGATATCCAGTAAAGGGGCGGGCA
TAGAGAGTCTCCTTAAAGATGACACCCATGAAGATGACGAAGCTGGCGAA
GGTCTGGGGTCAACGATTTCCACTGAAACACCACCTCGGGCAACACGTCA
GGTATTTGACTATGATCAATTGCCTGAGTCACGGATTAAAGACGGGGTCA
CCACCAGTGATGATATTATGGAATACAATGATGAAGATGAGGAGGAGGGC
ATTGAGGATGATAATGAAACGGTTACTGAAAATGATGAGGATGAGGAGGA
GGAGGAGGAGGCTGAAGAGCCAAACAATTTACTCAAACGAATCGATCAAT
TTGTGGATGATGTGGATGATGGGGAAGACGACTTGGAGGATCTTATCGAG
GGTCTGGAGGAGGACGAGATCGACGAGAGGCGACAGCAGCATGCAAGCTT
TCTAGACCAT
BO25336.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:45:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13272-RB | 2529 | CG13272-PB | 1..2526 | 17..2542 | 12630 | 100 | Plus |
| CG13272-RA | 2529 | CG13272-PA | 1..2526 | 17..2542 | 12630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:45:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13272-RB | 3251 | CG13272-RB | 447..2972 | 17..2542 | 12630 | 100 | Plus |
| CG13272-RA | 3336 | CG13272-RA | 532..3057 | 17..2542 | 12630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:44:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16813460..16815790 | 212..2542 | 11655 | 100 | Plus |
| 2L | 23513712 | 2L | 16811665..16811863 | 17..215 | 995 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 04:45:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2500 | 503..683 | 220 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2546 | 503..660 | 205 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6882 | 503..645 | 200 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2433 | 507..629 | 199 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6918 | 503..633 | 196 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2484 | 503..644 | 176 | 60.8 | Plus |
BO25336.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:48:24 Download gff for
BO25336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13272-RA | 530..3055 | 17..2544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:06 Download gff for
BO25336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13272-RA | 532..3057 | 17..2544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:36:06 Download gff for
BO25336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13272-RA | 532..3057 | 17..2544 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:36:06 Download gff for
BO25336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16813464..16815790 | 216..2544 | 99 | | Plus |
| 2L | 16811665..16811863 | 17..215 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:06 Download gff for
BO25336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16811665..16811863 | 17..215 | 100 | -> | Plus |
| arm_2L | 16813464..16815790 | 216..2544 | 99 | | Plus |
BO25336.pep Sequence
Translation from 16 to 2560
> BO25336.pep
MISERHKSRDLVTILGLFHLLLLGFAYGDHVVEVLAQSTTASTSQPQTLE
TIGSQDGAALTPGATTAPRLDPNNNNEWRPLGHGDPLQKDPTYDYSPPAL
DRVRYWAENNSTGQSNPEARKKELPPEVLRNKTKSEVLLLGVASDRVRVP
HSHSYPPVGGLGHYQQHHQQQQQQQHQQQAKYAAIRRSYYAPTQQQHNPQ
MPQHTHAQQHMPPTHLMPPPMMMMKSSGSSVPPMEYRHSMMATGAPTSYM
SLNHMSSPTTKQAMTSSVIYHQPPAMSHHTSLSSSTPWMTSRPPYRLSYS
DPHLQESVHTYSFSRPHHQQTMIYSPNSLPGHQNGSKTGLRKPWLHELLQ
KEVVVTSKPKVKPTMPATKYLMGTTKPHQPQPSVGFGMSSTRPPFTYAPV
TFVPGPPTIAVPTVATRKEPQPEIYITPTPQTSSSGFRPMTMSSTTTVGT
TQSTITTPLSIYQRASTTTSNRLLIPQTSNLAQRPTVAPAPSEPTTDSLF
SHYKQPPKPLLGPMYLIIEGHSKVKTYGQNELDPHSPKIVPVISKREPVV
RIADPNEKRGTVESYQVKHLHTKTTPMTTTTTTNKPTTMKPTTTRAPEKT
PIYSTTTKAPVVSTSTTTVATATKTTTSTTTKVPIISTTPLIPPQPTPEK
PSGVNDLLSLLDNMFADAQKMGSSTDLPLVASSTTSTVLRPVSTKLLPQQ
PEPRISSKGAGIESLLKDDTHEDDEAGEGLGSTISTETPPRATRQVFDYD
QLPESRIKDGVTTSDDIMEYNDEDEEEGIEDDNETVTENDEDEEEEEEAE
EPNNLLKRIDQFVDDVDDGEDDLEDLIEGLEEDEIDERRQQHASFLDH
BO25336.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:26:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13272-PB | 842 | CG13272-PB | 1..842 | 1..842 | 4435 | 100 | Plus |
| CG13272-PA | 842 | CG13272-PA | 1..842 | 1..842 | 4435 | 100 | Plus |
| CG34220-PA | 726 | CG34220-PA | 114..376 | 389..652 | 231 | 31.8 | Plus |
| Np-PB | 1041 | CG34350-PB | 196..761 | 174..803 | 222 | 23.7 | Plus |
| Np-PA | 1041 | CG34350-PA | 196..761 | 174..803 | 222 | 23.7 | Plus |
| CG34220-PA | 726 | CG34220-PA | 358..607 | 352..651 | 221 | 28.7 | Plus |
| CG34220-PA | 726 | CG34220-PA | 114..542 | 243..694 | 185 | 22.5 | Plus |
